Siniperca chuatsi (mandarin fish): 122869976
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Entry
122869976 CDS
T08948
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04382
Cornified envelope formation
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04518
Integrin signaling
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122869976 (col4a5)
04518 Integrin signaling
122869976 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122869976 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122869976 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122869976 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122869976 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122869976 (col4a5)
Exosome [BR:
schu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122869976 (col4a5)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122869976 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122869976
NCBI-ProteinID:
XP_044039410
LinkDB
All DBs
Position
LG22:complement(19116472..19177341)
Genome browser
AA seq
1686 aa
AA seq
DB search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NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgacttgaagatcgccgtgcctctggtcctcctcgccctgtgcgtcgcggtg
cagcgatccgactctgcggcttgccatggatgtgcgggatccaaatgtgactgcagtgga
gtaaaaggagccaaaggtgagaggggtttcccaggtctcaccggacagccaggagtccca
ggattccccggacctgaagggccgatcggacccagaggagagaagggtagcgatggacct
caaggacaatttggtcccaaaggaataagagggcctcctggattgccaggatttccagga
acaccaggacttccaggtctacccgggcaggatggacctccaggcccgagaggagtgccg
ggttgcaacgggacaaagggtgagaggggtttcccaggaaattcagtccctggacagcaa
ggatccccgggtccacctggtctgccaggaccaaagggagacccaggtgacgtgatctcc
accaaccgttttggagagaaaggagcactgggattgcccggattgccaggagttcctggc
ccttccggaccccccggtttgcaaggtccagtcggccctccaggacccagaggctatgag
ggtcgtccgggtcctcctggtcttcctggaccaaagggaaacatgggattgaacttccaa
ggacccaaaggagagaagggtgacccgggtttgccaggacctcctggtcctccaggacaa
gttggagaacagaagaggctaccagagacagagattcagagaggagacaagggtgaccca
ggtcttccaggtcccgtaggtgatccaggctttccaggacctcctggtccctcgggtggc
cagaaaggagacaagggagaaccaggagaaccaggcaaacgaggcaaaccaggcaaagac
ggcgaccctggttctccaggcttccccggaatcaaaggagaatccggcctgccaggtcct
ccgggcagggatggagagagaggattaaaaggtgatcgtggatacccgggcccaccagga
gtggtgattggcgaacacacagggggccgggtcggtcctaaaggtgatcccgggttaccc
ggagcacctggactcaaaggagagagaggacaaccaggtttaacaggccctccaggaaca
ccaggacttccagctatcggtggcattggtcagcctggatctccaggcttcccaggagag
agaggtcagaagggagactctggcgctccagggctgtctttgccaggtcccccaggacgt
ccgggggttcctggtggccagggtgcaccagggccccctggacctccaggcttttccaca
gcaggacaaacctgcgtcgctggagagcccgggcttcccggcgtgcagggagagagaggt
tacccaggagagttgggccagaaaggtgagaagggcgacacctgtgtgaactgctttgat
agtaccaccgccatcccaggacccccaggacccccaggacagcccggattccctggatct
cctggcgctcaaggtgtcaaaggagacagaggatttccaggaacacctggtgccgttgga
ccccctggtgcctccggtcctcaaggtgctccaggattcccaggagagaagggagaccca
ggcgatgccatcacagtcagcggtgtgaggggagagaagggtgacaccggcttccccgga
caacctggtctgcccggtctggacggtcgacccggtcgtgatggacagcctggatctcct
ggacccaaaggacctcctggatctctgctggtaaaaggagaacgagggctccccggtgag
ccaggttccccaggtattccaggagacaggggtcctccaggggcccctggcttcggacct
cagggacctccaggagagaaaggtatccagggcgtctcaggaagacccggaggtcccggc
gcacccggtgctaaaggtgaaccaggccggcagatggccgagaaaggcttaccaggaccc
agaggtcaggatggcgagccaggacggcccggctcaccaggtagcccaggtccgcctgga
cagaatggtttccctggtttaccaggagcgaagggtgatcctggactccctggcatcgga
cttccaggacccccaggagctaaaggattcccaggtgttgctggccagccaggagctcct
gcaggaccaggcagacctggagtagatggactccccggccagcctggatttcctggaccc
aagggtgagcctggctttggccttcctggccccccaggtttaccaggagtacctggagct
aaaggtttccccggaccaaagggagatcctggttttcctggcagccctggttcacctgga
cgatctggatttgatggcgctccaggaagtaaaggcgagcccggtactcctggtataccc
ggagctcgtggcccacctggatcccccaccatcggctcactggggccacctggcccacct
ggaccccctggtccaatgggaccaccaggcgagaaaggattccctggatcaaacggagtg
aaaggagaccccggccctccaggtctagatctcccaggtctgccaggagacagagggagt
cccggtttcccaggttccccaggaccagtcggaatcccaggacctcctggaggacctgga
ccggatggcctgcctggactggcaggtcagaaaggagacatgggtcccatgggatcccca
ggaccttctggaggaccaggagctccaggagcgcctggcgctaccggacttaaaggtgaa
cctggattcccaggtagagacggcgcacttggcagtcccggtgataaaggagagagaggc
gaacccggtctccaaggacccccaggagccccccagccaccatcgatctataagggagcc
aaaggagatcctggacttccaggtgcaccaggttttccaggtcagaaaggcatcgctggt
ctttccggtgaccctggactgccaggatcagatggacgccctggactccctggaccacca
ggtcctaagggagatcctggcatcccaggaggcccaggtgctcctggagttccgggacta
aaaggcagcatgggagaaatgggatttccaggaccgtcagggcagaagggtctaccaggc
cagccaggtaggcctggatccccgggacagccaggaggacctggtttccctggcgccaaa
ggtgaaccaggctctgctggagttggaccacctggacaagacggacccaagggtgaacca
ggccagccagggttcccaggaagtccaggactgaaaggaactccaggatcacccggtctc
ccaggtttaccaggagggccaggtgctaaaggcgaccccggcctcccaggattccaaggt
tctcctggtagccccggtccaaagggtctcgatggtgggcccggtgccccaggtctcact
ggagctcctggcagaccaggagagtccggccgaccaggaggaccagggttgccaggagag
aagggtcaggcaggtcgtgacgggatcccgggaccagctggagtcaaaggagagccaggg
cttcctggtttcggtggccccggtccccctggatttccagggttgccaggtgcaaaggga
gacccaggtcttcccggccaacctggcaatcctggtttccctggcactaaaggagaggct
ggtttccccggctcccctggtcttccagggaacagcggccctcctgggcctccaggactg
gctctgcagggccccaagggactccaaggaccccctggaccacccggaagagcaggtccc
gcaggtcttccaggttcacctggcccagagggtccccgtgggcccccaggaagcggtggc
gtgaagggagagaagggtaatcccggttctcctggccagccgggtttccccggacagaag
ggagaccctggtattcccggattcccgggttcctctggtcttcccggagttcctggtata
aagggagatatcggtctgcctggtgttcctggattccctggaccaaagggagacccagga
ctccccggcggcactggccttcctggaagtcctggagatgtcggacccactggccttcct
ggtgaccccggtatacctccgcctcccatgatagtgaagggagaacgaggaccccctggt
cctcggggcgtgataggtaatcggggattacctggtcctcctggacgtgatggacttcca
ggtcaacctggtgaccctggggatcctggtctggagggtccccctggcttcggcggccca
cccggcaggaagggagacaacggacccgccggtcagcctggtcagcgtggctaccctggt
ccccctggttcagacggtccacagggtcctcccggtcttccaggatcagtctctgcagcc
catggcttcctcatcaccagacacagccagggtcaggaggtgcccttctgtcccgaagga
actaacctcatctacgacggctactccctgctgtatgtgcagggcaacgagagggcacac
ggacaggaccttggctcggcgggcagctgtctgcgcagattcagcaccatgcccttcatg
ttctgcaacatcaacaacgtctgcaactttgcctcccgcaacgactactcctactggctg
tccacaccagagcccactcccatgtccatggctcccatcactggagaggacatcaaacct
tacatcagcaggtgttcagtgtgtgaagcaccagccatggtgattgcagtccacagtcag
accatccagattcccacttgcccttcgaattgggaagctctgtggataggatactccttc
atgatgcacactagcgcaggtgcagagggctccggtcaggccctggcctcccccggctcc
tgcctggaggagttccgcagcgctcccttcatagagtgccacggcaaagggacgtgcaac
tactatgccaactcctacagcttctggctggccactgttgaacccactgagatgttcagg
aagccccagtcggagactctcaaggcgggtaacctacggacacgtgtcagccgttgcgta
gtctgcatgaagaggacgtaa
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integrated database retrieval system
