Siniperca chuatsi (mandarin fish): 122870437
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Entry
122870437 CDS
T08948
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122870437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122870437
03009 Ribosome biogenesis [BR:
schu03009
]
122870437
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122870437
Spliceosome [BR:
schu03041
]
Complex A
U2 snRNP components
U2 related factors
122870437
Complex B
122870437
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122870437
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
90S particles
Helicases
122870437
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
SRP54
Cas3-like_C_2
AAA_25
Flavi_DEAD
AAA_29
nSTAND_NTPase5
nSTAND3
Motif
Other DBs
NCBI-GeneID:
122870437
NCBI-ProteinID:
XP_044040552
LinkDB
All DBs
Position
LG22:9918041..9944386
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AA seq
759 aa
AA seq
DB search
MSKRHLLDSGDDYSTSTKRPSDGRDRDRDRDREERSRDRDRDRDRDRDRDRDVKSSGVPT
IPAAGGGGFLKQTPFQQQINPFTNLPHTPRYYEIMKKRLQLPVWEYRESFTGILMRNQSF
VLVGETGSGKTTQIPQWCVDMVRSMPGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQE
VGYSIRFEDCSSAKTVLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVL
KEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAI
RTVIQIHMCEVDEGDVLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQ
QQRIFEPPPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESL
LVTAISKASAQQRAGRAGRTCPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKK
LGIDDLVHFDFMDPPAPETLMRALELLNCLAALNDDGDLTELGSMMAEFPLDPQLAKMVI
ASCEFNCSNEVLSITAMLSVPQCFVRPTEAKKVADESKMRFAHIDGDHMTMLNVYHAFKQ
NHESTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFSSRDYYTNIRRALVTG
FFMQIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPE
WLVKIAPQYYEMSNFPQCEAKRQLERIIAKLSSKEYSQY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgacatcttttagattcgggtgatgattattcaacgagtacaaagagaccc
tctgatgggcgtgaccgcgacagggacagagaccgcgaagaacggtcgcgggacagggac
cgtgaccgggatcgagaccgtgacagggaccgagatgtgaagtcatccggggtgcccacc
atcccagctgcaggcggtggaggcttccttaagcaaaccccttttcagcagcagatcaac
cccttcaccaacctgccccacacgccacgctactatgagatcatgaagaagcggctgcag
ctgcctgtctgggagtacagagagagcttcactggcatcctgatgcgtaaccagtctttt
gtgctggtgggagagacgggctctggaaagacaacacagatccctcagtggtgtgtggac
atggtgcggtcaatgccgggaccaaagagagcagtggcctgcacccagcccaggagggtg
gcggccatgagcgtcgcccagagggttgctgatgagatggatgtcatgctgggccaagag
gtgggctactccatcaggtttgaggactgcagctctgccaagacggtactcaagtacatg
acagatggaatgttgctgcgggaggccatgaatgatcctctgcttgagcgctatggtgtc
atcatcctggacgaggcacacgaacgcacattagctacagatatcctcatgggggtcctc
aaggaggtggtccgccagaggcctgacctcaaggtcatcgtgatgagtgccacgctcgat
gccggtaagttccaggtgtactttgacaactgcccactgctgaccatccccggacgcaca
caccctgtggagattttctacacgccggaaccggagcgggactacctggaggcggccatc
cgcactgtgatccagatccacatgtgtgaggtggatgaaggggacgttttgctcttcctc
actggacaagaggaaattgacgaagcctgcaagcgaatcaagagggaggtcgacgacctg
gggcccgaagtcggtgatatcaaaatcatcccactgtactccacattgcctccacagcag
cagcagaggatctttgagccgcccccacccaataaaccaaatggtgccatcggacggaag
gttgtcgtgtcaacaaacatagccgagacgtccctgaccatcgacggtgtggtgtttgta
attgatcccggatttgccaagcaaaaggtgtataacccacgtatcagagtggaatccctt
ttggttacagccatcagcaaggcttcagctcagcagagagcaggtcgtgctggacggaca
tgcccaggaaagtgtttccgcctttacacagagaaagcttacaagacagaaatgcaggac
aacacgtatccagagattctgaggtctaatctgggctctgtggtgctgcagctgaagaaa
ctgggtattgatgacctggtgcactttgacttcatggacccaccagccccagagaccctg
atgcgagccctggagttgctgaactgcctggcagctctcaatgacgacggtgacctgacg
gagttgggctccatgatggcagagttccccctggacccccagctggccaagatggtcatc
gccagctgtgaattcaactgttcaaacgaggtcctctccatcactgccatgttgtcagtc
ccacagtgcttcgtccgacccacggaggctaagaaggtggctgacgagtccaagatgcgc
tttgcccacatcgacggagaccacatgacgatgctcaacgtctaccacgcctttaaacaa
aaccacgagtccactcagtggtgctatgacaatttcgtcaactaccgctcgctgatgtca
gcagacaacgtacgccagcagttgtccaggattatggaccgcttcaacctgccgcggcgg
agcactgagtttagcagcagagactactacaccaacatccgccgcgcgctggtcactggc
ttcttcatgcagatcgcccacctggagcgcaccggccattacctgacagtaaaggacaac
caagtcgttcagctgcacccctccactgtgctggaccacaagccagagtgggtgctgtat
aatgagtttgtgctcaccaccaagaattacattcgcacgtgcactgacatcaaaccagag
tggctggtgaaaattgccccgcagtactatgagatgagtaacttcccccagtgtgaagca
aagagacagttggagcgtatcattgcaaaactctcatccaaggaatacagtcagtactaa
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