Siniperca chuatsi (mandarin fish): 122871039
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Entry
122871039 CDS
T08948
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03013
Nucleocytoplasmic transport
schu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122871039 (upf2)
03015 mRNA surveillance pathway
122871039 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122871039 (upf2)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122871039 (upf2)
mRNA cycle factors
P-body specific factors
122871039 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
122871039
NCBI-ProteinID:
XP_044041504
LinkDB
All DBs
Position
LG23:complement(3116173..3143080)
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AA seq
1344 aa
AA seq
DB search
MMFSIRHHLWNQHERVLPRFTRKRSPMTDVCFATISSMPAERKRSVNMDEKDVCPPSNKE
KEKDGERRPASARDKAKDEAKMSGKKDSGKEEKRKRLEEEKKKKEEKERRKKEEEKQKAE
EEQKKKEEEEKRQQEEEERKLQEEEAKRQREEEAALLKEKEEGHQLHQEAWERHHCRKEL
RSKNQNAQEGRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDSLSNDFGSLNLSKYIGE
AVSSVVEAKLKISDVGCAVHLCSLFHQRYTEFAPLLLQAWKKHFEARKEEKAPNVSKLRT
DLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDRETHTHVSVVISFCKHCGDDIAGLMP
RKVKLATDKFGLAFPPSEIISTEKQQPFQNLLREYFTSLTKHLKKDHRELQNTERQNRRI
LHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMPELPQDKTVQEEHGPGIDIF
TPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAILFKDNEKSSQGKDKDDAKDGREG
KDAASTTEELELDLEALDITDEPLELEGADEAENEELAKKLLDEQEQEDEEANTGSHLKL
IVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLV
ATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKMFSKTDTLH
CLKMLLSDFTHHHIEMACTLLETCGHFLFRSPESHLRTSVLLEQMMRKKQAQHLDARYVT
MVENAYYYCNPPPVEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEVK
SYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQ
RRISSAKFLGELYNYRMVESAVIFRTLFSFISFGINPDGSPSSLDPPEHLFRIRLVCTLL
DTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSIDVWTKDHPFPIDIDYMISDTLELLRPK
MRLSCSLEEATKQVTDLEREVLVKLGLAMEKDGRSSAMSEGEVLDEEDDDGDDDEEGGAE
TEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYLTDSNKENETDEENNEVTIRGGG
LKHVACAEDEDFIQALDKMMLENLQQRSGETVKVHQLDVAIPLQLKSQLKKGGSGQPCIG
EGDSDISDTMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDI
NERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGSVKRARNERH
EKRDREERQDRKDKQERSQRHVTE
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgatgttttcaataaggcatcatttgtggaaccaacatgagagggtccttccacggttc
acacggaaacgatcgccaatgaccgatgtttgttttgctacaattagcagtatgcctgct
gaacgcaagcgctcagtaaacatggatgagaaagacgtttgcccccctagcaacaaggaa
aaagagaaggatggtgagagaagaccagcatctgctcgagacaaagcaaaagacgaggcc
aaaatgagtggtaaaaaagacagtggcaaggaggagaagagaaagcgcctagaggaggaa
aagaagaagaaagaggaaaaggagcgaagaaagaaagaggaggaaaaacagaaagcggag
gaggaacagaagaagaaagaggaggaagagaagagacagcaggaggaggaggagaggaag
cttcaagaggaggaggccaaaagacaacgtgaggaggaggcagctctcctgaaggagaag
gaggaggggcatcagctgcaccaggaggcctgggagcggcatcactgcaggaaggaactc
cgcagcaagaaccagaacgcccaagagggtcggcccgaagaggctttcttcagccgactg
gactccagccttaaaaagaacactgcctttgtcaagaagttacgtacacttactgaacag
cagcgagactcactctccaatgactttggctcactgaacctcagcaagtacatcggcgag
gccgtgagctctgtcgtggaagccaagctgaagatctctgatgtaggctgcgctgtccat
ctgtgctccctcttccaccagcggtacacagagtttgctccgttactgttacaggcgtgg
aagaagcactttgaagcgaggaaggaggaaaaggcgcctaatgtgagcaagctgcgcaca
gacctgcgctttattgccgagcttaccatagttggcctcttcacagacaaagagggcctt
tctctcatttacgagcagctgaagaacattattgggaccgaccgggagacccacactcat
gtgtcggtggtaatcagcttctgtaagcactgtggggatgacattgccggtctgatgccc
cgcaaggtgaaactggctactgacaagttcggcttggccttccctccgagcgagataatc
agcacagagaaacagcagcccttccagaaccttctacgggagtacttcacatcgctcacc
aaacacctgaagaaggaccaccgggagctacagaacactgagaggcagaacaggcgtatc
ctgcattccaaaggggagctgagtgaggacaggcacaagcaatatgaagagtttgccact
tcctaccagaagctgctggccaacactcagtccctggctgatctgctcgatgaaaacatg
ccagagctgcctcaggacaagactgtgcaggaggagcacggtcctggcattgacattttc
acccctggtaagcctggagagtatgacctggagggagggatctgggaagatgaagatgct
cgtaacttctatgagaacttggtggacctgaaggccttcgtccctgccatcctcttcaag
gacaacgagaagagcagccagggcaaagacaaggatgatgccaaagatggcagagagggg
aaggatgcggccagcaccacagaggaactggagctggacctggaggctctggacatcaca
gatgaacctcttgaactggagggagcagacgaggcagaaaatgaagaactggccaaaaaa
ctgctggatgagcaagaacaagaggatgaagaggccaacacagggtcccacttgaagcta
attgtggacgccttcatccagcagctccccaactgtgtcaacagagacctcatagacaag
gctgccatggacttctgcatgaacatgaacaccaaatctaaccggaggaagcttgtccga
gccctcttcactgtccccaggcagaggttagatcttctgcccttctactctcgcctggtg
gcaactcttcatccctgcatgtcagatgtggctgaggacctctgctccatgctgaaggga
gacttcaggtttcatattcggaagaaggaccagatcaacatcgagacaaaaaataaaaca
gtcagattcatcggggaactggccaagttcaagatgttctcaaagacggacacgcttcat
tgtcttaagatgctgctgtctgatttcacccatcaccatatagagatggcctgcacactg
ctggagacctgcggccacttcctcttcagatcccctgagtctcacctgcgtaccagcgtc
ttgctggagcaaatgatgcgtaaaaagcaggcacagcatctggacgcccgctacgtgacg
atggtggagaacgcctactactactgcaaccccccacccgtggagaagacggtgaagaag
aagaggccgccgctgcaggagtatatccgcaagctgctctacaaggacctgtccaaggtc
accactgagaaggtgctgaggcagatgcgcaagctgccctggcaggatcccgaggtcaag
agctacctgatctgctgcatggtcaacatctggaacgtcaagtacaacagcatccactgt
gtggccaacctgctggccggcctggtggcctaccaggaggacgtgggcatccatgtggtg
gacggagtgctggaggacatccggctgggcatggaggtcaaccaacccaagttcaaccag
cggcggatcagcagcgccaagttcctgggtgagctctacaactaccgcatggtggagtcg
gccgtcattttccgcaccctcttctccttcatctctttcgggatcaatccggacggcagc
cccagctcgttggaccctccagagcacctgttccgcattcgcctggtctgcaccttgctc
gatacctgcggccagtactttgaccggggctccagtaagaggaagctggactgtttcctc
atctacttccagcggtacatctggtggaaaaagagcattgatgtttggaccaaggaccac
ccgttccccatcgacatcgattacatgatcagcgacaccctggagctgctcaggcccaag
atgaggctcagctgctccctggaggaggccaccaaacaggtcaccgacctggagagggag
gtgctcgtcaaactaggtcttgccatggagaaggacggacgctccagtgccatgagtgaa
ggggaggttctcgatgaggaagacgatgacggcgatgacgacgaagagggcggcgctgag
actgaggagcagtcaggaaacgagagcgaaatgaacgaacaggaagaggatgaagggtca
gagaacgaagaggaggagagagaggaagaggaagaagagaacaccgactacctgactgac
tccaataaagagaatgagaccgatgaggagaacaatgaggttaccatccgtggcggtgga
ctgaagcacgtggcctgcgctgaggacgaggacttcatccaggcactggataagatgatg
ctggagaacctgcagcagcgtagcggcgagacggtgaaggtgcaccagctggacgtggcc
attcctctgcagctgaagagtcagctgaagaagggaggctccggacagccgtgcatcggg
gagggagattcggacatctctgacaccatgcagttcgtcatgctaacacgcaagggcaac
aagcagcagtataagatcctgaacgtgcccttgtcatcccacctggcggcgaaccacttc
aaccagcagcaggccgaacaggaagagcgcatgaggatgaagaaactcaccctggacatc
aatgagagacaggaacaggaggactaccaggagatgatgcagtccctcgctcagcgtccg
gctccggccaacaccaaccgggagcgtcggcctcgctaccagcacccgaaaggcgccccc
aacgccgacctcatcttcaagactggaggaagcgtgaaaagggcaagaaatgaaaggcat
gagaagcgagacagagaggagagacaagacaggaaagacaagcaggagagaagccaaaga
catgtcacggagtag
DBGET
integrated database retrieval system
