Siniperca chuatsi (mandarin fish): 122871092
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Entry
122871092 CDS
T08948
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122871092 (pdzrn4)
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122871092 (pdzrn4)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122871092 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
GRASP55_65
Motif
Other DBs
NCBI-GeneID:
122871092
NCBI-ProteinID:
XP_044041641
LinkDB
All DBs
Position
LG23:complement(12886384..12925267)
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AA seq
816 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNARDFSKVNHEETVVEAIRRDPIVVQVLRRTPTRAT
AAVAPNHSGTPQDVCVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEREFYECPEYLSNTPAEVERTEEYEYEEVELCRQNSQEKLGLTLCYRTDDEEDTGIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVALLSSEEARSIILLVTRPEIQLEEE
VWLDDEQQELVEELKMEILEERRKHKEHSFDRRDEHKAEEDMTTDTATCSSNNQDKDSGF
GCSTDSPEHQPLLARLHRRTPVHCLRDRWRAEHPHTRRGTVVPQDTQGPRTSSKGQGHEG
VVSIRNGGGGILGLENRFQQLLELKCQIRNGGECGVYSIRHSIECSLTEQGGGDGDGVDG
VGGGNGVEQELRLLNEELRSIELECQSIMQAHHLRQTHQPDSSQPTSCSPGHKRHGRLAD
IHEYPERLDSDKIREKDSSSAYNTAESARSTPLGTERSPDHSLQRHISITNQKNLRLASS
TPSSPIPIPKPQGTPSRCRPADPGSVISSSPDQSNPSRSESDPALPADDERCEKKGRTRD
STRGLPYGSSYQTTPYQGQGGSRQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPMHRNGR
PGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKMGRY
WSKEERKQHLVRAREQRKRREFMQKSRLECLKEGPGSGAEGRKEINILELSHKKMMKKRN
KKILDNWMTIQELMSHGARIPEGSKVHNAFLSVTTV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaggaacactataaactgctgtatgag
attgcacaggtgaatgcgcgcgacttctccaaggtcaaccatgaggagacagtggtggag
gccatcaggcgagaccccatagttgtccaggtcctccggcggacccccaccagagccacg
gctgctgttgcacctaaccacagcggcacaccacaggatgtgtgtgtggtagatgtttgc
acgcaaacggacatcacctttgagcacatcatggcactggcgaagcttcggcctgctact
ccacccgttcctgacatctgtcccttccttttgtctgacagttgtcattccatccacacc
atggaacgtgagttttatgaatgtccagagtacctgtctaataccccagcagaggtggag
aggactgaagagtatgagtatgaggaggtggagctgtgtaggcagaacagccaggagaag
cttggcttgacgctgtgctacaggacggacgatgaagaggacaccggcatctatgtcagc
caggtggaaccgaacagtatagcagcaagagatggacgcatcaaggaaggagatcgtatt
ctacagataaatggctgtgaagtgcaagacagagagaaagctgttgccttgctgtcaagt
gaagaagcaaggagcatcatactactggtaacaaggccagaaatccagctggaggaggag
gtatggctggatgacgagcaacaggagcttgtggaagagctgaagatggagatcctggag
gaaaggaggaagcacaaagaacatagctttgacagaagagatgagcataaagctgaagaa
gacatgacaacagacacagctacctgttcctccaacaatcaagacaaagacagtggattt
ggatgcagtacagacagtccagagcaccaacccttgctggctagactccacaggaggacc
ccagtccattgcctgagagaccgatggcgggcagagcatccacacacaagacgagggact
gtagtgccacaagacacccagggtccgaggacatcgtccaaaggtcaaggccatgaaggg
gtagtcagtattcgcaatggtggaggtgggatcctaggtttagagaatcgcttccagcaa
ctcttggagctcaagtgtcaaatccggaatggaggcgagtgtggggtgtactccattcga
cacagtatagagtgtagtctcactgagcaaggaggaggggatggagatggcgtagatggt
gttggaggaggaaatggagtggagcaggagttgaggttgctaaatgaggaactgcgcagc
attgagctcgagtgccagagcatcatgcaggcacatcatctccgccagacccaccagcca
gactcctcacaacccacgtcctgctcaccaggacacaagcgacacggcaggttggccgac
atccacgaatacccggagaggttggacagcgataagatcagagagaaggacagctccagt
gcctacaacacggcggagagtgcgcggtcgacaccactaggtacggagagatctcctgat
cattctctgcagagacacatcagcatcaccaaccagaaaaacctcagactggcttcctcc
acaccctccagccccatccctatccccaagccccagggtacacccagtcgttgcaggcca
gcagacccaggctctgttatctccagcagtccagatcagagcaacccttcccggtctgag
tcagatcctgccctgcctgcagacgatgagcggtgtgagaagaaagggaggaccagagat
tccacgagggggcttccctatggttcttcatatcagacaaccccctatcaaggccaggga
ggatccaggcaacttcagagctatatgcagctgctacaacagcactcatccctggagtat
tctcagagccagctgagtctgctcagtgtctgtcgagatcccatgcacaggaacggacgc
cctggggaaccccgtctagagtggaaggtcaaagttcgcgctgacggtacacgctacgtg
gcccggaggcctgctcgtgaccgcattctaagggagcgggcactaaggatccgagaggag
aggagcggaggcatgaccacagatgacgatgctatgagtgagatgaagatgggccgctac
tggagcaaagaggagaggaagcagcacttagtacgggccagggagcaaaggaagaggaga
gagttcatgcaaaagagccgccttgagtgtctaaaggaggggccaggcagtggagctgag
ggcaggaaggagatcaatatcttggagctcagtcacaaaaagatgatgaagaaacgaaac
aaaaagatcctggataactggatgaccatccaggagctgatgagccatggagctagaatc
ccagagggctccaaagtacataacgccttcctatcggtcacaactgtctag
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integrated database retrieval system
