Siniperca chuatsi (mandarin fish): 122871270
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Entry
122871270 CDS
T08948
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b isoform X1
KO
K05636
laminin, beta 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122871270 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122871270 (lamb1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Lipase_GDSL
DUF3887
Motif
Other DBs
NCBI-GeneID:
122871270
NCBI-ProteinID:
XP_044042119
LinkDB
All DBs
Position
LG23:4975435..5013317
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AA seq
1780 aa
AA seq
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MSLIIHIIATLALWVPVGALLPEYADVCTEGSCYPATGDLLIGRAHKLTVSSTCGLKQPE
RFCIVGHLEEEKKCFVCDSRQMYNEDNNHLSHTIENVVTTFAHNRLKTWWQSENGVENVT
IQLDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKNWQVYRYFAYDCETSFPGVSSGPM
VKVDEILCDSRYSDIEPSTEGEVIFRVLDPAFKIEDPYSLRIQNMLKITNLRVKFIKLHT
LGDNLLDSRDEVTEKYYYSLYDMVVRGNCFCYGHASECAPIDGPPAGAEGMVHGRCVCNH
NTEGLNCERCQDFYHDLPWRPAEGRNTHSCKKCECNQHSSSCHFDLAVYMTTGNMSGGVC
DDCQHNTVGRQCEQCAPFYYQHPNRDLRAPNICEQCNCDPDGSLQGGLCDSRTDVAAGLI
SGQCRCKANVEGERCDNCRQGHYGLGQGPDGCLPCTCNPLGTLPGGNSCDSDTGSCFCKR
LVDGHNCDQCLPQHWGLSNDMDGCRPCNCDQGGAVNNNCDPHSGQCVCREHMFGRRCDQV
ESGFYFIALDHYTYEAEDANHGPGVTVVPRPYPLDRSPTWTGMGFVNVPEGAYLEFTINN
IPESMDYDILVRYEPQLPEQWEQVNIRVQRPVFNPPNYSGHCSNAIQSGDEQSISLSPGS
RHVLLVSPVCFEKGLNYTVRLSLPLYSSVSDVQSPYTLIDSLVLIPRVRELDIFHGIDGE
GAWDTFQRYRCLESSQSVVKSPMTDICNDYIFSVSALLHKGAIACQCDPQGSLSAVCESS
GGQCQCRPKVVGRNCDRCAPATFLFSPSGCRPCDCDPRGSVSAFCHEATGQCECVPGATG
RQCSLCLQGFWGFPQCRPCQCNGHSEYCDPQTGECQGCRDFTTGHHCERCLDGYHGDPEL
GSGGHCRPCMCPDGPRSGRQFSDSCYLLANTNQLVCVCSPGYKGARCDECAPGYFGNPLV
PGGRCMPCQCNNNIDMQNPASCDARTGACLKCLYHTQGYACQHCKLGYYGNAATQSCRKC
MCHSEGSVPQACSSPDECQCDQRSGQCPCQPNVVGQNCDRCAADTWNIASGTGCQRCDCN
PIHSIGSSCNEFTGQCVCKPGFGGKTCHECKELFWGDPEVKCHACDCDSRGISSEQCHRA
TGQCTCVEGVSGPRCDKCARGYQGEFPDCEPCHQCFAVWDTVVAELTNQTRRLEVQVTEL
KSSGVTVPYKELISSMERNAKAVREIVESNPAAVKLEQIQDLMHQITGLMSYLNGNLNTT
AETLNLLHSDTNATDANLDALTDEANQLELSVQTLRQEVYNAKNANIQGAMDTIAAAQMK
STMAEHRANASTSNPGNIVEQSATVRKTTEDKLSSSQKEFDRKHQRNSQKLDKLSNELNT
FDLSPLSKKTCGGAAEGDGCSGSPCGGLGCVGEDGAPQCGGEGCVGLAMTSHAALKSAQH
LDQEILAAMQEVDKLSRMVWEANNRANEAKVNAMEVLIKSNRSKERVEQSNEQLRNLIKE
IRDLLTNEKADVAVIEAVANEVLALEMPTSTEKLQELTKEIREKVGTLTSVETILSQSAE
DIQVAEMLLKQAKAASEEASKMKETADVVKAALDETERAQSIAIDAIQLAQNNTKGTLDL
LISVESETATSELKLSNTTGRLVQLEREVGLLRQNNLEVKSLAETSKHITDQAKMNAEEA
QQEFEVEVKDKFEEVEDLVEDKGESVLQARRRADELQQEAKELLAQSSSKLQKLGDLEIS
YELNQRILEAKAAELDELERTARRILEEISHKVTLYSTCL
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaataatccacattatagcaactctggccctgtgggttcccgtcggggctctg
ctgccagagtatgcggatgtctgcaccgaaggcagctgctaccccgccacaggtgacctg
ctgatcggccgggcgcacaaactcaccgtctcctccacctgcggcctgaagcagccggag
cgcttctgcatcgtcggacatctggaggaggagaagaaatgttttgtgtgcgactccagg
cagatgtacaacgaggacaacaaccacctcagccacaccatcgagaacgtggtcaccacc
ttcgcccacaaccgactcaagacctggtggcagtcggagaatggtgtggagaatgtgacc
atccagctggacctggaggccgagtttcatttcacacaccttatcatgaccttcaagacg
tttcggccggctgccatggtgatcgagcgatcgatggactttgggaagaattggcaggtt
tatcgttactttgcctacgactgtgagacatccttccccggcgtgtcctccgggccgatg
gtcaaagtggacgaaatcctctgcgactcccgttactcagacatcgaaccatccacagag
ggagaggtgatatttcgggtgctggaccccgccttcaagattgaggacccctacagcctg
aggatacagaacatgctgaagatcactaacctccgggtgaagttcatcaagctccacacg
ttgggcgacaacttgctcgactcccgcgacgaggtgacggagaagtactactactccttg
tacgacatggtcgtccgtggcaactgcttttgctacggacacgcctccgagtgcgccccg
atcgatggaccccccgccggagctgagggcatggtccatggccgctgtgtatgtaatcac
aacaccgagggactaaactgtgagcgctgtcaagacttttaccacgatctgccttggaga
cctgcagagggacgaaacacccactcctgcaagaagtgtgagtgtaaccagcactcgtca
tcgtgtcacttcgacctggccgtgtacatgacgaccggcaacatgagcggaggcgtgtgc
gacgactgtcaacacaacacggtgggccgacagtgcgagcagtgtgcacccttctactac
cagcaccctaaccgagacctgagggcccccaacatctgtgagcagtgtaactgtgacccg
gacggatctctgcagggcggactgtgtgactcgcggaccgatgtagcagctgggctgatc
tcaggccagtgtcggtgcaaagccaatgtggagggcgagcgctgcgacaactgcagacag
ggacactacggactgggacaggggcctgatggctgcctgccttgtacctgtaacccgctg
ggcactctacctggaggaaactcctgtgattcggacacaggaagttgcttctgcaaacgc
cttgttgacggacataactgcgatcagtgtctgccgcagcactggggtctgtccaatgac
atggacggctgcagaccatgtaactgcgaccagggcggggctgtcaacaataactgtgac
cctcactcgggacagtgtgtttgcagggagcacatgtttggacgacgctgcgatcaggtt
gaatccggcttctacttcatcgctctggatcactacacctacgaggcggaggacgccaat
catggacctggtgtgacggtggtaccgaggccttatcctctggatcgcagtcctacatgg
accggtatgggttttgttaatgtgccagaaggagcctacttagagttcaccatcaacaac
atcccagagtccatggactatgacatccttgttcgctatgagccccagctgccagagcag
tgggagcaggtgaacatcagagtgcagcgtcccgtcttcaaccctccaaactactctggt
cactgcagcaacgccatccagagtggagatgagcagtccatctctctttcacctggatcc
agacatgtgttgctggtgagcccggtgtgtttcgagaaagggctgaactacacggtccgt
ctcagtctgcctctctactcgtcagtcagtgacgtccaaagcccgtacacgctcattgac
tccttggtgctgataccccgggtcagggagctggacatattccatgggatcgatggtgag
ggagcgtgggatacgttccagcgctaccgatgtctggagagcagccagagcgtcgtaaaa
agccccatgaccgacatctgtaacgactacatcttcagcgtctctgctctgctgcacaaa
ggagctatagcatgccagtgtgaccctcagggttcactcagcgctgtgtgtgagtccagt
ggaggtcagtgccagtgtcgacccaaagttgtcggcaggaactgtgaccgttgtgcccca
gctacgttcctgttcagcccctcaggctgcagaccttgcgactgtgaccctcggggttcg
gtcagcgccttctgccatgaggcgacaggccagtgtgagtgtgttccaggggcaacgggg
cgccagtgttccctctgcctgcagggcttctggggcttccctcaatgcagaccgtgccag
tgtaacggccacagcgagtactgcgaccctcagactggagagtgtcagggctgcagagac
ttcaccaccggacaccactgtgagaggtgtctggacggttaccatggtgacccggagttg
ggttcaggtggccactgtcgcccctgtatgtgccccgatggcccgcgcagtggacgccag
ttttctgacagctgttacctcctggctaatactaaccagctggtgtgtgtgtgcagccct
ggctacaaaggtgccaggtgtgatgagtgtgctcccggttacttcgggaaccctctggtg
cccggtgggcgctgcatgccctgccagtgtaacaacaacattgacatgcagaacccggcg
tcctgtgacgctcggacaggtgcctgtctcaaatgcctgtaccacactcagggctacgcg
tgtcagcactgcaaactgggttactacggcaacgctgccactcagagctgcaggaagtgt
atgtgtcactctgagggctcagtacctcaggcctgttcgtcccccgatgagtgtcagtgt
gatcagcgcagcggccagtgtccctgccagccgaacgtggtcggtcagaactgcgaccgc
tgtgctgctgatacgtggaacatcgccagcgggacgggctgccagcgctgcgactgcaac
cccatccactccatcggatcctcctgcaatgagtttacaggacagtgcgtgtgcaaaccc
ggttttggtggcaagacgtgtcacgagtgcaaagagctcttctggggggatccagaggtc
aaatgtcatgcttgtgactgcgattctcggggaatctccagtgagcagtgccatcgtgcg
acaggtcagtgtacctgtgtggagggcgtgtctggcccacggtgtgacaagtgtgccagg
ggctaccagggtgagttccccgattgcgaaccctgccaccagtgctttgctgtctgggac
accgtggtcgccgagctgactaatcaaactcgacgtctggaggtccaagtaacagagctc
aaaagcagcggggtgacggtgccatataaagaattaatcagtagcatggagagaaacgcc
aaggctgtgagagaaatagtagagagcaaccctgcagcagtgaagctggagcagatacag
gatctgatgcatcagattaccggtttgatgtcctacctaaatggaaacctgaacacgacg
gcggagaccttaaaccttctccacagtgacaccaacgccaccgatgcaaacctggacgca
ttgactgatgaggccaaccagctggagctgagtgtccagacactgagacaggaagtgtac
aacgccaagaacgccaacatccagggtgccatggacaccattgcagctgcacaaatgaag
tctacgatggcggagcaccgcgccaacgcctccaccagtaatcccggaaacatagtggag
cagtcagccactgtacggaaaaccacagaggacaaactgagcagcagtcagaaggagttt
gaccgcaagcaccaaagaaactcgcagaagctggacaaattgtccaacgagctgaataca
tttgacttgtcaccacttagcaagaagacatgtggtggtgcagctgaaggtgacggctgc
tctggctccccctgcggtggtttgggttgtgttggcgaggacggagcacctcagtgcgga
ggagaaggatgcgtaggtctcgccatgacttcccatgctgctctcaaatcagcccaacac
ctggatcaggagatcctagcagcgatgcaggaggtggacaagctctccaggatggtatgg
gaagccaacaaccgtgcaaacgaggccaaggtgaacgctatggaggtgctgatcaaatcc
aaccggagcaaagaaagagtggagcagagcaacgagcagctccgcaacctcatcaaagag
atacgagacctgctcaccaatgaaaaggcagatgttgcagtgattgaggcagtggccaac
gaggtgttggctctggagatgccgacctcaacagaaaagttgcaggagctgacgaaggag
atcagggagaaggtcggcactctgaccagcgtggagacgatcctcagtcagagcgcagag
gacatccaggttgcagagatgctgctgaaacaggccaaggctgccagtgaggaggcgtct
aaaatgaaggagacagcagatgtagtgaaggcagccctggatgagactgagcgtgctcag
agtatcgccatcgacgccatccaactggcccagaacaacactaagggcaccctggacctg
ctgatctctgtggagtcggagacggccacgtcggagctgaagctcagtaacaccacgggt
cgtctggttcagctggagagggaggtcggcctgctgagacagaacaacctggaggtcaaa
agcctggcggagacgtccaaacacatcaccgaccaggccaaaatgaatgcagaggaggcc
cagcaggagtttgaggtggaggtaaaagataaattcgaggaggtggaggacctggtggag
gataaaggggagtcggtgctgcaggcgaggaggagagcggacgaactgcagcaggaggcc
aaagagctgctcgcccagagcagcagcaagctgcagaaactcggagatttggagatctcc
tacgagctcaaccagcgcatcctggaggccaaagctgcagagctggatgagctggagcga
accgcccgccggatcctggaggagatcagccacaaagtgacgctgtacagcacctgtctg
tga
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