Siniperca chuatsi (mandarin fish): 122871596
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Entry
122871596 CDS
T08948
Name
(RefSeq) LOW QUALITY PROTEIN: transcription intermediary factor 1-alpha-like
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
schu01001
]
122871596
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122871596
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122871596
Protein kinases [BR:
schu01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
122871596
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122871596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
PHD-1st_NSD
PML_CC
zf-C3HC4
DUF5054
FemAB_like
DUF7615
ParB
Motif
Other DBs
NCBI-GeneID:
122871596
NCBI-ProteinID:
XP_044042844
LinkDB
All DBs
Position
LG23:complement(14453392..14466370)
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AA seq
1072 aa
AA seq
DB search
MDENAENVDNDDIVIIVENEAESLPAEEERLKQQATFGLMDTCPVCKLSFHNREPKLLPC
LHSFCKRCLPAPFRRADPRRDSQGQVDNSKPLGAIRCPVCRQECWEMDVLDNFFVKDSAE
VPSSTVEKTSQVCMSCDDNTEATGYCVECVEFLCLTCIEAHQRVKFTRDHTIRQKEEMSP
EAVGISTQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRNHRQYL
ENMTQQLQEKRKAIEDVSSCISTGLQQVDENRKAVTNEIKKSICNLIMEINRKGKILVNQ
LEALTKDHELGLKKQQEDVNSLSRHLDHVINFTKWATASHSGTALLYCKRLILFQIHYLM
RASCNPSIVPQSSVRFQCRSGFWATNVDLGSLVVERGPGRPPITNHQAGPRPEAPTVGLS
VSAAQQRQSTLAQLQMQVDKLSQQPHRQPPPNHWSWYQNVRLPGPXGPPPPTRPIHGGSS
PSQGPPSLGQPGRRYGSSHPNPRSPTSSMLHNTGFPPAQSLRDLIHSSSFPPKPMDVFQG
TSRYPQPLSAGAATQTSLHQRGLTDSSFLKRSEAGGSVPSITISIPKPSFAPTLASASAD
KTSTLNHITVQARQNSPMAKPSSSDRSTGTTSWKPTFEPPSAPSAKRRRRSSPGPVIVIK
DEPEDEDEVRFVQSSVGSSLPDSSTGAQSKPRQQQKVPAPVPVPGSESKEQCPQPAAQPE
SEKRAEPEEDPNEDWCAVCQNGGELLCCDKCPKVFHLACHIPTLNESPSGEWFCSFCRDI
ASPEMEYDCDSKDDPVSEGFPPVDRRRCERLLLRLFCNDFSTDFQQPASPSETRRYKELI
ETPMDLSIVKRKLELKEGECYSSPEEFVADVRLIFFNCAKYYKATSEVGSAGLYLEDYFE
EQLKQVYPDRVFPGGREEQMIPPLEDEIDEEEEEMMEQGMAPVEDDKPQSPAGEGIPPVE
EDLPPLEEATAPAEEEKPETEEKVIDSNEKETNEKVAAAEGDKPPAEEVEQDEETPVQEV
KSAPAADSETKDGEAPSSPKEENPQLPTDNTADPPETQEKESAPADSAKEEG
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaatgccgaaaatgttgacaacgacgacattgtcattatcgtggaaaacgag
gcagaaagtttgccagccgaggaagagaggctgaaacagcaagccactttcgggctgatg
gacacttgtcctgtctgcaagttgagcttccacaacagagagcccaaactgctgccgtgt
cttcactctttctgcaagaggtgtctccctgcccccttcaggagggctgacccgaggcgt
gactcgcaaggacaagtcgacaacagcaaaccattgggtgccattcgatgtccagtgtgt
agacaggaatgctgggagatggacgtgttggataatttctttgtcaaggactctgctgag
gtgccgagcagcaccgtggagaaaaccagccaggtgtgtatgagctgcgatgacaacaca
gaggcaacaggttactgcgtggagtgtgtggagtttctgtgtttgacgtgtattgaggcg
caccaaagggtcaagttcaccagggatcacaccatacgccagaaggaggagatgtctcca
gaagcagtaggtatttcgacacagaagcctgtgttttgtgacatccacaagcaggagccg
ctaaagctgttctgtgagacgtgtgaccggctcacctgtcgagactgtcagctgcttaag
cacaaggatcacaactaccagtttttggaggatgcgtacaggaatcacaggcagtatctg
gagaacatgacgcagcagttgcaagagaaaagaaaggccatcgaggacgtgtccagctgt
atcagcactggacttcagcaagttgacgaaaaccggaaggctgtaactaatgaaataaag
aagtccatctgtaacttgattatggagatcaacaggaagggaaagattcttgttaaccag
cttgaagctctgaccaaggaccatgagttgggtttgaaaaagcagcaagaggatgtcaac
tctctgagcaggcacctagaccatgtcatcaactttaccaaatgggctacagccagccat
agtggaacagccctcctgtactgcaagagactgatcctttttcagatccattacctgatg
agagcaagctgtaatccctccatcgtccctcagagttctgttcgctttcagtgtcgctct
ggtttctgggccacgaacgtagaccttggttctctggtagtagaaaggggcccaggccgg
ccgcccatcaccaaccaccaggcaggtcccagaccagaggcacccactgtaggtctctca
gtctcagcagctcagcagcgacagagcacgctggctcagctccagatgcaggtggacaag
ctttcccagcagccccacaggcagccccctcctaaccactggtcctggtaccaaaatgtc
aggctcccaggacccnncggccctccacccccaaccaggcccatccatggagggtcctcc
ccctcccaaggcccccccagcttggggcagccgggacgcagatacggaagctcccacccc
aacccgagaagccccacatcgtccatgcttcacaacacaggattcccacctgctcagtct
ctgagagatctgatccatagctccagcttccctcctaaacccatggatgtgtttcagggt
acgtcccgctacccacagcctctgtccgctggagcggctacgcagacgtcactacatcag
cggggcctaacggactcctccttcctgaagaggagcgaggctggtggatctgtcccctcc
atcaccatctccatccccaaacccagcttcgctcctactctagcttcagcaagtgcagat
aaaacaagcacacttaatcacataacagttcaagcaaggcagaactccccgatggccaaa
ccatcttcttcagacagaagcacagggacgacttcctggaagccgacttttgagcctcca
tctgccccctcagccaagcgacgaagaaggtcgtcccccgggcctgttatcgtcatcaag
gacgaaccagaggatgaggatgaagttcgttttgtgcagtccagtgtagggtccagcctg
ccggacagcagcaccggggctcagtcaaagcctcggcagcagcaaaaggtgcctgcccca
gtcccggtccctggatcagagtccaaagagcagtgtcctcagcccgcagcgcagccggag
tctgaaaagagagcggagccggaggaagatcctaatgaggactggtgcgccgtctgtcag
aacggaggggagctgctctgttgtgacaagtgtcccaaagtttttcatctggcctgccac
attcccactctgaatgagtcccccagcggcgagtggttctgttcgttctgccgagacatc
gcctctcctgagatggagtacgactgtgacagcaaggatgatcccgtctctgaaggattc
ccacctgttgatagaaggaggtgtgagaggttgcttctacgtctgttctgcaatgacttc
agcactgacttccagcagcctgcttctccatcagagacgagaaggtacaaagagctgatc
gagaccccgatggatttgtcaatagtgaagaggaaattggagttgaaggagggtgaatgt
tatagcagtccggaggagtttgttgccgacgtcaggctcatatttttcaactgtgctaag
tactacaaggcgacctcagaagtggggagtgcaggcttgtacttggaggattactttgag
gaacagttgaaacaagtctacccagatagggtcttccccggagggagggaggaacagatg
atccctcctttggaggacgagatagatgaagaagaggaagagatgatggagcaaggcatg
gctcccgttgaagacgataaaccgcaaagtcctgcaggagaaggaatcccccctgtagaa
gaggacttgcctcctctagaagaagcgacagccccggcagaggaggaaaagccagaaaca
gaggagaaggtgattgattcgaacgaaaaggagacgaatgaaaaggtagcagccgcggaa
ggagacaagcctcctgcagaggaggtagagcaggacgaggaaactcccgtgcaggaggtg
aaaagcgctccagcagctgatagcgaaacaaaagacggagaagctcccagctccccaaaa
gaggagaaccctcagctccctacagacaacactgcagatccacctgaaacccaggagaag
gagtcagctcctgcagactcagcaaaagaggagggatag
DBGET
integrated database retrieval system
