Siniperca chuatsi (mandarin fish): 122871754
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Entry
122871754 CDS
T08948
Symbol
si:ch211-79m20.1
Name
(RefSeq) serine/threonine-protein kinase Doa
KO
K17386
platelet-derived growth factor subunit B
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04010
MAPK signaling pathway
schu04020
Calcium signaling pathway
schu04510
Focal adhesion
schu04540
Gap junction
schu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122871754 (si:ch211-79m20.1)
04020 Calcium signaling pathway
122871754 (si:ch211-79m20.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122871754 (si:ch211-79m20.1)
04540 Gap junction
122871754 (si:ch211-79m20.1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
122871754 (si:ch211-79m20.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
schu04052
]
122871754 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122871754 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
schu04052
]
Cytokines
Growth factors (RTK binding)
122871754 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Growth factors/receptors
122871754 (si:ch211-79m20.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
122871754
NCBI-ProteinID:
XP_044043010
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Position
LG3:6129977..6148005
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AA seq
572 aa
AA seq
DB search
MRSWVLLLLLAAFSAARLRLGSAEGDPLPPSLVDLVRNSPISSVDDLKLLLQQETNAIEE
EEDEHDILTNHTHGRYTRSLVEAQPAQQAACKVRTEVMEVTRSMLDRRNANFLLWPPCVE
VQRCSGCCNTRLLQCVPTVTSSRYLQVIKIQYINRKAHYDKAIIPVEDHVSCRCQLPSSS
SSSSSSSSVPIPRSSIQSNLNPNPPPLQQPPPSSHIPLALPRPVHPSPPKTHASKADLHR
HDDLKHNQQHHHPEEREPVARQWQQGSYTQLVHWTQPRVHQGQTQVQPGVHQSIVGALGP
VSSWPSEARAEHSIMGSTQQVGHGSGYEGSREESGVHVANSGGGAHHPDHIQRQQQLLQH
QQRQHLQQQYQYHHQPNNPQQYNHGGVEDQELRTQYRLSVPQSDSASLPGSPTQPPKLEQ
NPTPPMTTNQKDSVTSQNNTEVTNHKQTETEKEGSVRKESRSDNSGDTAGAELANQGKEK
DSRLTSGDGHLTEEERRQKTLETVQSELDRETHLYPHHPQQRPKLTTFKTALSTVAPISP
SARRAPFRPASPRRRRKHRKRISKAAIRAMIM
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcctgggtcctgctgctgctgctggctgcgttctcagcggcccgtctgcggctc
ggcagcgctgagggtgatccgctccctccgtcgctggtcgacctggtgaggaactctccc
atctcctctgtggatgacctgaagctgctgctgcagcaggaaaccaatgcaatagaagag
gaagaagacgagcatgatattctcacaaatcacacccatggacgatacactagaagtctt
gtggaggcgcagccggcccagcaagcggcgtgtaaagttcggacggaggtgatggaggtg
acaaggtcaatgctggaccgccgtaacgccaacttcctgttatggccaccctgcgtggag
gtgcagcgatgttcgggctgctgcaacaccaggctgctccagtgtgtccccaccgtcacc
tccagcagatacctgcaggtgataaagatccagtacataaacaggaaagcccactacgac
aaagccatcatcccagtagaagaccacgtaagctgcaggtgccaacttccctcatcttcc
tcatcctcctcgtcctcctcgtctgttcccatccctcgctcctccattcagagcaacctc
aatcccaacccaccgccactgcagcagcctcccccatcctcccacattcccctggccctc
ccccggcccgtccacccctctccaccaaagactcacgcttcaaaggccgacctgcatcgc
cacgacgacctgaagcacaaccagcagcaccaccaccctgaagagcgtgagccggtggcg
aggcagtggcagcagggcagttacactcaactggtgcactggacgcagcccagggtgcac
caggggcagacacaagtgcagccaggggtacaccagtcgattgttggggcgctcgggcca
gtcagcagctggccatctgaagcgagggcggagcatagtatcatgggaagtacgcagcag
gtcggccatggaagcgggtatgaggggagcagggaggaaagcggcgtgcatgttgcaaac
agcggtgggggagcgcatcatccagatcacatacagaggcagcaacagttgttacagcat
cagcaaagacaacaccttcagcagcaatatcagtatcatcatcagccaaataatccacag
cagtacaaccatggaggagtggaggaccaagagctgaggacacaatatcggctcagcgtt
ccccaatcagacagcgcctctctgcctggcagcccaacccagccgcccaaattagaacaa
aaccccactcctcctatgactaccaatcagaaagactcagtgaccagccaaaacaataca
gaggtcacaaatcacaaacagactgagactgaaaaagaaggtagcgtgaggaaggaaagt
aggtcggacaatagtggggacacggccggggcagagctggccaatcaggggaaggaaaaa
gactcaagactgaccagtggggatggtcatttaacagaggaggagaggagacagaaaact
ctggagacggtacagagtgaattggatcgagagactcatctttatccgcatcatcctcag
caaagaccaaaactgaccacatttaaaacagccctctctactgtggctcccatctcgccc
tcagcccgtcgtgccccgttccgaccagcctcgcctcgccgcaggaggaaacaccgcaaa
cgcatcagcaaagcagccatcagagccatgatcatgtag
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