Siniperca chuatsi (mandarin fish): 122872003
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Entry
122872003 CDS
T08948
Name
(RefSeq) LOW QUALITY PROTEIN: NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
schu04054
]
122872003
Pattern recognition receptors [BR:
schu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122872003
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FISNA
NLRC4_HD2
NACHT
NOD2_WH
PRY
LRR_6
SPRY
LRR_4
AFG1_ATPase
Motif
Other DBs
NCBI-GeneID:
122872003
NCBI-ProteinID:
XP_044043600
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Position
LG24:1282214..1317336
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AA seq
1142 aa
AA seq
DB search
MNQCEDREEGAPPSKTSLCGEHGSQTRAQSPEKQRPDSAGPGPGPEPSCVSFKSDQSMEP
PLVFKRQASQVPEIYGRPGPEPGPEPSCVSFKSGQSNVRLIDFKGQQPSATKRVDQESSE
VPSGQSAQQHQIHLDSIFMLLEENIVTFVKNELKKMQKVLSPDYPECLESQREDEEVLDS
EGEEQRRSSREAFLKITLHFLRRMKQEELADCLQSRSHSGDCQRKLKSNLKEKFQCVFEG
IAKAGNPTLLNQIYTELYITEGGTAEVNDEHEVRQIETASRKPDRPETTIRCEDIFKPSP
GRDEPIRTVMTKGVAGIGKTVLTQKFTLDWTEDKANQDIHFTFPFTFRELNVLKEEKFSL
VELVHHFFTETKEAGICRFEEFQVLFIFDGLDECRLALDFHNTKILSDATKSTSVDVLLN
NLIMGNLLPSARLWITTRPAAANQIPPECVDMVTEVRGFTDPQKEEYFRKRFRDKKQANR
IISHIKTSRSLHIMCHIPVFCWITATVLEDVLKTREGGALPKTLTEMYIHFLVVQTKLKN
IKYDGGAETDPHWTPESRKMIESLGKLAFEQLQKGNLIFYKSDLTECGIDITAASVYSGV
FTQIFREERGLYQDKVFCFVHLSIQEFLAALHVHLMFISSGVNLMAEEQPTSWWSKTRKH
KSGVKQLYQSAVDKALQSPNGHLDLFLRFLLGLSLQTNQTLLQGLLTLTGSVSKTSQETV
EYIKKKVKETPSAEKSINLFHCLNELNDRSLVEQIRQSLSSGRISTDKLSPAQWSALGFI
LLSSGKDLDVFDLKKYSASEEALLRLLPVVKASNKALLSVCNLSERSCEALSSVLSSQSS
SLRELDLSNNDLQDSGVKLLTAGLESPHCKLETLRLSGCLITEEGCASLASALSSNPSHL
RELDLSYNHPGDSGVKLLSAGLEDPHWRLETLRVEPGGVRWLRPGLRKYSCELTLDTNTV
NRKIKLSDDNRKATRVKEDQPYPDHPDRFDCWPQLLCRNGLTGRCYWEVEWRDGVYISLS
YRGISRRGNSEDCLFGWNDQSWRLECSDGRYSVWHNKRETXHLSSSSSSSSSSSSSSSSV
SHIVAVYVDCPAGTLSFYRVSSDTLIHLHTFNTTFTEPLYPGFGFGFGFWSRFGSSVSLC
SL
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagtgtgaggacagagaggagggagcgcctccctctaaaaccagtctgtgtggg
gaacatggcagccagaccagagctcagagccccgagaagcagagaccagactctgctgga
cctggacctggacctgagcccagctgtgtgtccttcaagagtgaccagtccatggagcca
ccacttgttttcaaaagacaagcttcacaagtgccagagatctatgggagacctggacct
gaacctggacctgaacccagctgtgtgtccttcaagagtggccaatcaaatgttcgcctc
attgattttaaaggacaacaaccctctgctacaaagagagtcgaccaggagagctcagag
gttcccagtggtcagtctgcccagcagcatcaaatacacctggactccatatttatgctg
ctggaggagaacattgtcacttttgtgaagaacgagctgaagaagatgcagaaggttctg
agtccagattacccagaatgcttagagagtcagagggaggatgaggaggtgttggacagt
gagggggaagagcagaggaggagcagcagagaggcatttctgaagatcacactgcacttc
ctgaggagaatgaagcaggaggagctggctgactgtctgcagagcagaagtcattctgga
gattgtcagcgtaaacttaaatctaacctgaaggagaagttccagtgtgtgtttgagggg
atcgctaaagcaggaaacccaacccttctgaaccagatctacacagagctctacatcaca
gagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacagcatcc
aggaaaccagacagaccagaaacaacaatcagatgtgaagacatctttaaaccctcacct
ggaagagatgaaccaatcagaacggtgatgacaaagggagtggctggcatcgggaaaaca
gtcctaacacagaagttcactctggattggactgaagacaaagccaaccaggacatacac
tttacatttccattcactttcagagagctgaatgtgctgaaagaggaaaagttcagcttg
gtggaacttgttcatcacttctttactgaaaccaaagaagcaggaatctgcaggtttgaa
gagttccaggttttgttcatctttgacggtctggatgagtgtcgacttgctctggacttc
cataacactaaaatcctgagtgatgcaacaaagtccacctcagtggatgtgttgctgaat
aacctcatcatggggaacctgcttccttctgctcgcctctggataaccacacgacctgca
gcagccaatcagatccctcctgagtgtgttgacatggtgacagaggtcagagggttcact
gacccacagaaggaggagtacttcaggaagagattcagagataagaagcaggccaacaga
atcatctctcacatcaagacctcacgaagcctccacatcatgtgccacatcccagtcttc
tgttggatcactgctacagttctggaggatgtgttgaagaccagagagggaggagcgctg
cccaagaccctgactgagatgtacatccacttcctggtggttcagaccaaactgaagaac
atcaagtatgatggaggagctgagacagatccacactggactccagagagcaggaagatg
attgagtctctgggaaaactggcttttgagcaactgcagaaaggcaacctgatcttctac
aaatcagacctgacagagtgtggcatcgatatcacagcagcctcagtgtactcaggagtg
ttcacacagatctttagagaggagagagggctgtaccaggacaaggtgttctgcttcgtc
catctgagcattcaggagtttctggctgctcttcatgtccatctgatgttcatcagctct
ggtgtcaatctgatggcagaagaacaaccaacgtcctggtggtctaaaacaagaaaacac
aaatctggagtgaaacagttgtaccagagtgctgtggacaaggccttacagagtccaaat
ggacacctggacttgttcctccgtttcctcctgggactttcactgcagaccaatcagacg
ctcctacaaggcctgctgacactgacaggaagtgtctcaaagaccagtcaggaaacagtc
gagtacatcaagaagaaagtcaaagagactccctctgcagagaaaagcatcaatctgttc
cactgtctgaatgaactgaatgatcgttctctagtggagcagatccgacagtccctgagt
tcaggaagaatctccacagataaactgtctcctgctcagtggtcagctctgggcttcatc
ttactgtcatcaggaaaagatctggacgtgtttgacctgaagaaatactcagcttcagag
gaggctcttctgaggctcctgccagtggtcaaagcctccaacaaagctctactgagtgtc
tgtaacctctcagaaagaagctgtgaagctctgtcctcggttctcagctcccagtcctct
agtctgagagagctggacctgagtaacaacgacctgcaggattcaggagtgaagctgctg
acggctggactggagagtccacattgtaaactggaaactctcaggctgtcaggctgtctg
atcacagaggaaggctgtgcttctctggcctcagctctgagctccaacccctcccatctg
agagagctggacctgagctataatcatccaggagactcaggagtgaagctgctgtctgct
ggactggaggatccacactggagactggaaactctcagggtggagcccggtggagtccga
tggctgagaccaggtctgaggaagtattcctgtgaactcacactcgacacaaacacagtg
aacagaaagatcaaactgtctgacgacaacaggaaggcgacacgtgtgaaggaggatcag
ccatatcctgatcatccagacaggtttgactgctggcctcagctgctgtgtagaaatggt
ctgactggtcgctgttactgggaggtcgagtggagagacggagtttatatctctttgagt
tacagaggaatcagcaggagaggaaacagtgaagactgtttgtttggatggaacgatcag
tcctggagactggagtgctctgatggtcgttactctgtctggcacaataagagagaaaca
ntccatctctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctctgtc
tctcacatagtagcagtgtatgtggactgtcctgctggcactctgtccttctacagagtc
tcctctgacacactgatccacctccacaccttcaacaccacattcactgaacctctttat
cctggctttgggtttgggtttgggttctggtccaggtttggttcctcagtgtctctgtgt
tctctgtag
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