Siniperca chuatsi (mandarin fish): 122872051
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Entry
122872051 CDS
T08948
Symbol
ddx3xb
Name
(RefSeq) DEAD-box helicase 3 X-linked b isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122872051 (ddx3xb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122872051 (ddx3xb)
03041 Spliceosome [BR:
schu03041
]
122872051 (ddx3xb)
03036 Chromosome and associated proteins [BR:
schu03036
]
122872051 (ddx3xb)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122872051 (ddx3xb)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122872051 (ddx3xb)
mRNA cycle factors
Common to processing body (P body) and stress granule
122872051 (ddx3xb)
Spliceosome [BR:
schu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122872051 (ddx3xb)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122872051 (ddx3xb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
122872051
NCBI-ProteinID:
XP_044043649
LinkDB
All DBs
Position
LG24:8923608..8945497
Genome browser
AA seq
752 aa
AA seq
DB search
MSHVAVENVHGLEQQLAVLDLSAADGQGGGTNRRYIPPHLRNKDASKNVGNAFAAGRQGG
YTIAPAANYGWDGGRNNFVNGYHDNRMAGGNSFNRGPPRMERGRGGVGGGYRGNRGGAFN
PINPAQPMSFAGYENKDTGGWNTAKDAYSSFGNNRGKSAFFNDRGNANRGRFEHGGFGGG
GGGGGNSRWVEESRDDGDWSKPTPRNERLEHKKHSLVPASEFELFSGSNTGINFEKYDDI
PVEATGQNCPHHIESFQDVDMGEIIMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQT
GSGKTAAFLLPILSQIYTEGPGEALNAAKASGQENGKYGRRKQYPISLVLAPTRELALQI
YDEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCN
YLVLDEADRMLDMGFEPQIRRIVEQDTMPHKGIRQTMMFSATFPKEIQILARDFLEEYIF
LAVGRVGSTSENITQKVVWVEESDKRSFLLDLLSATVIPSEVQDNTGDNIEKPGKDSLTL
VFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGL
DISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQ
EVPSWLESLAYEHQHKSSSRGRSKRFSGGFGARDYRQTAAGGTAGGFGGRGGRNQAGHGG
TRGFGGGGFGNFYTSDGYGGNYTHSQVDWWGN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgtccacggtctagagcagcagctcgctgtcctagac
ttgagcgcagcagacggacaaggtggaggcactaacaggcgatacattcctccacattta
cggaacaaagacgcttccaaaaatgtaggaaatgcctttgctgctggtcgacagggtggc
tacaccatagcgcccgcagccaactatggttgggatggggggcgcaacaactttgttaat
ggctaccatgacaaccgcatggctggcggcaactcttttaaccgcggtccgcctcgcatg
gagcggggccgaggtggtgtcggaggaggttaccgtggcaacaggggcggagcctttaac
cccatcaacccagcacagccaatgagcttcgctggctacgaaaataaagacacaggcggc
tggaacactgccaaggacgcatatagcagttttggtaacaaccgagggaagtctgcattc
ttcaatgacagaggcaatgctaatagaggaaggtttgagcatggtggatttggtggtggt
ggaggaggaggaggaaacagccgctgggtggaggagtcccgagatgatggagactggtcc
aaaccaacaccacgtaacgaacgccttgaacacaaaaaacattccctagttccagcttct
gaatttgagttgttctccggcagcaacactgggatcaactttgagaaatacgatgacatt
cctgttgaggccacaggacagaactgtcctcaccacatcgagagtttccaagatgtggac
atgggtgagattatcatgggtaacattgctctgagtcgctacaccagaccgacccctgtc
cagaaatatgccattcctattgtcaagtcaaaacgagacctcatggcctgcgcacagaca
ggttctgggaagactgcagcgttcctgctgccgattcttagccagatctacaccgaagga
ccaggagaagctcttaacgcagctaaagcatctggacaagagaatggaaagtacgggcgt
cgtaagcagtaccccatctcactggtattggctccaaccagagaactggcactgcagata
tatgatgaagccaggaagttttcctaccggtccagagtgcgtccctgtgtcgtgtatgga
ggagcagacattggccagcagataagagatctggagagaggctgccacctgctggtggcc
acaccgggaagactggtggacatgatggagaggggcaagattggactggactactgcaac
tacctggtcctagatgaggcagatcgtatgttggacatgggatttgaaccacagataaga
cgcatcgttgaacaggacaccatgccgcataagggcatccgacaaaccatgatgttcagc
gcaacctttcctaaagagatccagatcctggccagggatttcctggaggagtacatcttc
ctggcggtgggcagagttggttccacctcagagaacatcactcagaaagtggtgtgggtg
gaagagagcgataagaggtccttcctcctggacctgctcagtgctacagttatccccagc
gaggtacaggacaatactggagacaacatagagaaacctggtaaggactcgttgactctg
gtttttgtggagaccaagaaaggcgctgacgccttggaggacttcctgtatcgggagggc
tacgcctgcaccagtatccatggcgaccgctcccagcgagaccgagaggaggccctgagc
cagttcagatcaggaaaatgccccattctggtggccacagcggtagcagctcggggtctg
gacatctccaatgtgaaacacgttattaactttgacctgcccagcgacatagaggagtat
gtccaccgtattggacgtacaggacgagtcggaaacctgggactggccacatcgttcttc
aatgataaaaatggcaacatcactaaagacctgctggacattctggtagaggccaaacag
gaagttccctcatggcttgagagcctggcctatgaacaccagcataagagcagcagcaga
ggacgctctaagaggttctctggtggttttggagcccgtgattatcgccaaacggccgcc
ggaggcaccgctggagggtttggaggacgtggaggtcgcaaccaggcaggacatggagga
acccgtggctttggaggaggtggttttggtaacttctacaccagtgacggatacggagga
aactacacacactctcaagttgactggtggggcaactag
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