Siniperca chuatsi (mandarin fish): 122872159
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Entry
122872159 CDS
T08948
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122872159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122872159
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122872159
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122872159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
Ig_DSCAM-DSCAML_C
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
zf-C3HC4_2
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
122872159
NCBI-ProteinID:
XP_044043944
LinkDB
All DBs
Position
LG24:11192453..11256921
Genome browser
AA seq
689 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCTTNESVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLPLPLPLPAPHSGPNSPGEEGSNRL
ALVPVSAAMSSLGTPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTG
HRLIEPMPDSHLRGLQCLEHEEEKVNMYCVSDDQLICSLCKLVGRHRDHQVAALSDRYEK
LRQALDSNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLMEECDVLIDIIQQRRQ
IIGSKIKEGKAQRLRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINER
VSMATASTQVLIPEIHLTDTFDTFALDFAREKKLLENLDYLTAPSAPNIREELCTASYDT
IAVHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTK
YIFVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHS
QERFTSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLC
RCNNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGYVTFYDAVGSQHLHTFHVSFVQPVC
PVFNVWNKCLTILTGLPIPDHLEGLETQD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgcccaatctgcctggagctctttgaagaccct
ctactgctcccctgcgcccacagcctgtgcttcggctgcgcccaccgcatcctcatctcc
cactgtaccaccaacgaatctgttcaaagcatcggcgccttccagtgccccacctgtaga
tatgtcatttccctgagtccggagcgtggactagaaggacttaagagaaacgtgaccttg
cagaacattattgatagagttcagagggcctcatcttcagctgggctgcctctacctctg
cccttgcctgcgccccacagtgggcccaactctcccggagaggaagggagcaaccgattg
gcgctggtccccgtcagcgccgccatgtccagcctaggaacacctcctgaaccggtccag
tgccagttctgcgagcaggacccgccgcaggatgccgtcaaaacgtgtgtgacgtgcgag
gtgtcgtactgcgaggagtgcctccgagcgacgcacccaaacaagaagccgttcaccggc
caccggctcatcgagcccatgccagactcccacctcagagggctccagtgcctggagcac
gaggaggagaaggtcaacatgtactgtgtcagtgatgatcagctgatctgctcgctgtgc
aaactggtcggaaggcacagggaccaccaggtggcagcactgagcgaccgctatgaaaaa
ctcaggcaagccctggactccaacctgagcaatttgatcaagaggaacaacgagctggag
tcacttatggggaaattgatccagacttgtcaacatgtagaggtgaacgcgtcccgccag
gagggcaagctcatggaggagtgtgatgtcctgattgacattattcagcagaggaggcag
atcattggcagcaagatcaaggaggggaaggcacaaaggcttcggaagctcgcccaacag
atctccaactgcaagcagtgcatcgagaggtcctcggccctcatcacacaggccgatcag
acactgaaagaaaccgatcacgctcgcttcctgcagactgccaagagcatcaacgagagg
gtttccatggcaactgcatcaacccaagtgctgatccctgagatacacctaacagacacc
ttcgacacttttgccctggacttcgcccgagagaagaagttgctggagaatctggattac
cttactgctccaagtgctccaaacataagggaggaattgtgcacagcatcctacgacacc
atcgctgtccactggacgtccgatgatgaattcacagtggtgtcctatgagctccagtac
gccatcttcactggacagtctaacattgccagtctgtgtaactcgttggagagctggatg
attgttccgaacatcaagcagaaccactacacagtgcacggtctgcagagtggcaccaag
tacatctttgttgttaaggccattaaccaagcgggaagcaggagcagtgaaccagggact
ctgaagaccaacagccagccgttcaagctggaccccaaatctgcccacaagaagctgaag
gtgtcccacgacaacctgacagtggagcgggacgaaaccacatccaagaaaggccacagc
caggagcgtttcaccagccagagcagctacggcgtggtgggaaatgtctacatcgacagt
ggtcgtcactactgggaggctttaattggagggagcacatggtacgctgtgggtatagcc
tacaaatcagcccccaagcacgagtggatcggcaagaactcggcctcctgggtgctctgc
cgctgcaacaactcctgggtggttcgccacaacagcaaagagctggccatcgagccctcg
ccccacctgcgacgcgtcggggtcctgttggactacgacgctggttacgtgaccttctac
gatgccgtgggctcccagcacctgcacacatttcacgtctccttcgtccagcccgtgtgt
cctgtgttcaacgtgtggaacaagtgtctgacgattctcactggtttacccatccctgac
catctagagggactggaaacccaagactga
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