Siniperca chuatsi (mandarin fish): 122872192
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Entry
122872192 CDS
T08948
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122872192
00535 Proteoglycans [BR:
schu00535
]
122872192
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122872192
Exosome [BR:
schu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122872192
Proteoglycans [BR:
schu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122872192
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122872192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
122872192
NCBI-ProteinID:
XP_044044012
LinkDB
All DBs
Position
LG24:complement(4604310..4651026)
Genome browser
AA seq
1528 aa
AA seq
DB search
MVLEGDKDFPSNLTKIIGDVSKINFSISDYTPSPPDSRINGSNSPCLPVPSDWSICSGKQ
PKSFTLPNFFNHTSVEEVRAVLQEWAWLTRTGCHHGAKWFLCLLLVPRCPSPTQPLHLPC
RSFCQVLQDSCWASLENGRLPVECRLLPERAHEPGRPACVSVSNWKEESGVSLLQLIGDP
PPDEITRVVGPRGEAAYVFTPAAVSGQPALAHVPNPFYRHFSLLFHIKPSTPAASVLFSI
TDRTQKLMYIGVKLSAVQSGRQRVRFFYTEPDSEASYEAATFDVPSLVDSWTRFSLSVFE
EQVTFYQGCDSEPQVVKFERSPDPMELDTGAGIFVGQAGGADSDKFQGEIAELTVVGNPR
AAERLCDDEDDSDAASGDFGSGEGDKRQTGHTVRTTPASLRPVPEPPVITSQGTRLKETD
VRYQQPSVDYSRPGSPGQRGPSGAKGERGDKGEKGSKGDTGLAGPKGESGTISGSGFSSQ
GGGQKGEKGAKGSSGFGYPGNKGDRGAQGPPGPPGPPGPAAEVVRLGDGSVVQQVAGPPG
PPGPPGSDGAAGPPGTDGEPGDPGEDGKAGPAGPQGPPGNPGTSGAKGQKGEVGEGQPGP
RGPPGPPGPPGPGTVDRPTFVDMEGSGFPDLDKIRGARGPPGPPGPPGPPGTSVALGANG
PVAFGPPGPPGQDGVPGLPGPPGPPGAPGQPGLRGEKGDSGELGLPGAAGQKQDTQDSNF
FTGLFSYFTPSSTGAQGDQGRSGTPGQTGLAGLPGPMGPVGPPGPPGPPGPPYRVGFDEY
EVNNGLPGLRGPPGPQGPPGIAGLPGKPGLPGSHGDKGAEGPRGPPGIPGLDGLPGQLGE
KGERGWKGDMGLPGRDGGPPGPPGPPGPPGQITYQTTADGGVGFPGRPGFPGPGGPKGDK
GDIGPPGYAAKGEKGEPGIIMGPDGRPQYLGGLAGKPGERGPPGPVGPPGPYGPSGLKGE
IGLPGRPGRPGLNGARGEKGDSGSGSGYGYPGPPGPPGPPGPPGPSAPIDRLRGYEDYSR
YYPALKGEKGDRGPPGTLEIPGVGSNFDIYTLRNEMKGETGSPGLKGEKGEPGRGYYGGS
GVGAPGVPGPPGPKGDSIIGPPGPQGPPGQPGRGYDGQPGPPGPPGPPGPSLPGAYRGTQ
TINIPGPPGPPGVPGLPGQSSGVTVLRSYDIMTANARRQPEGSLVYIIEETDLYLRVRDG
VRQVHLGNYIALPSEDGNEVAAVEPPPVVPYSPDHHSNTDTFTHDSQRPTEVHPDSGHRP
DPHHPTHVDPRYPSNPDPRYQPDARYQPDPRFPAPTDPRFPSYSDRLNQPDGRYSVHVTQ
QRPAYPDTRYAVTPQRRPPPPVAQSPVHHHTSGPGLHLIALNSPQTGSMRGIRGADFMCF
TQAQAIGMKGTFRAFLSAKLQDLHSIVRKADRDRVPIVNLKDEVLFDSWDAIFNDGRMKD
NVQIYSFDGKDVLSDSTWPEKMMWHGSTGAGQQHVDSFCESWRVGDRALTGMASSLQSGS
LLQQSSSSCSSSYVVLCVENSYTVHAKR
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atggtcttggaaggtgataaagacttccctagcaatttaaccaagattattggtgatgtt
tctaaaataaatttttccatttctgattacacaccatccccccctgatagtcgcatcaat
ggttctaactcaccttgtcttcccgtgccttctgattggtccatttgctctggcaagcag
ccaaaatcttttacgttgcccaactttttcaaccacacatctgtggaggaggtgagggcg
gtcctacaggagtgggcgtggctcacgaggacggggtgtcaccatggcgcaaagtggttt
ctctgcctcttactggtgcccaggtgcccttcacccacccagcccctgcaccttccctgt
cgtagcttctgccaggtgctgcaggacagctgctgggcatctctggaaaacgggcgtctc
ccagtggagtgtcgcctcctgcctgaaagagcgcatgagcccgggcgtcctgcgtgcgtg
tcagttagtaactggaaagaggagagcggcgtctctttgctgcagctaatcggagaccct
ccaccagatgagatcaccagggttgtcgggccgaggggggaggccgcctacgtcttcacc
cctgcggcggtgtcaggtcagccggctctggcccacgtccccaaccctttctaccgtcat
ttctccctcctcttccacatcaagccctccactccagccgcctccgtcctcttctccatc
accgacaggacccagaagctcatgtacatcggcgtcaagctcagcgcggtgcagtccggc
cgtcagagggtgcggttcttctacaccgagcccgactctgaggcttcgtatgaggcagcc
acctttgacgtgccaagcctggtggactcctggactcgcttctcgctgtctgtctttgag
gagcaggtgactttctatcagggctgcgactctgagccacaggtggtgaagtttgagcgt
tcgccggatcccatggagctcgacacgggggcggggatctttgtgggtcaggcaggagga
gccgactctgacaagttccagggtgagattgcagagctgacagtggtgggaaaccctcgg
gcagctgagcgtttgtgtgacgacgaggatgactctgacgctgcctctggtgactttggc
agcggtgaaggcgacaagagacagacgggacacactgtgaggaccacacctgcctccttg
cggccagtacccgaaccccctgtgataacctcacaaggaaccagactcaaagaaacagat
gtcaggtatcagcagccgtcggtggactacagccggcctggatcaccaggccaaagaggt
cccagcggtgctaaaggtgaaaggggtgacaaaggagaaaaaggctcaaagggggacaca
ggcctcgcagggccaaagggagagtcgggcaccatctctggatccggtttctcctctcag
ggcggaggacagaagggagaaaaaggtgcaaagggcagctccggcttcggataccccggc
aataaaggagaccgtggggctcaggggcctcccgggccacctggtcctcccggacctgca
gctgaggtggttcgacttggggacggctctgttgtgcagcaggtggctggaccccccgga
ccgccgggaccaccggggtcagatggggccgcaggacccccaggaactgatggagagcct
ggtgatccaggagaggatggaaaagctggtcccgctgggccacaaggtcccccaggaaat
ccaggaacgtctggtgccaaaggccaaaagggtgaggttggagagggtcagccaggaccc
agaggccccccaggtccaccaggacctcctggacctggcaccgttgaccgcccaacgttt
gttgacatggagggctcaggattcccagacttggacaaaatccggggtgcccgtggtcct
ccgggccccccaggccctcccggcccccctgggacttcagtggcactgggagccaacggt
ccagtagcttttggacctcctggaccacctggacaggatggagtccctggtctaccaggc
cctcccggtcctcccggtgcaccgggccagccaggactcagaggagaaaagggtgacagc
ggtgagcttggtcttccaggagcagctggacaaaagcaagacacgcaagactccaacttt
ttcaccggcctgttctcttactttactccatcctctacgggtgctcagggtgaccaagga
aggtcaggtacaccagggcagactgggctggcagggcttccaggtcccatgggaccagtt
ggacccccaggaccccctgggccaccagggccaccgtaccgtgttggtttcgatgaatat
gaggtgaacaatggcttgcctggactcagaggcccacctggaccacagggtccacctggt
attgcaggtctacctggtaagccaggtttgccaggtagccatggagacaaaggagcagag
ggaccaagaggacctccagggataccaggtcttgacgggttgcccggacagttgggtgaa
aagggagaaagaggatggaaaggagacatgggtctgccagggcgagatggcgggccacct
ggacctccagggcctcccggaccgccaggacagatcacctaccagacaacagccgatgga
ggagttggttttccgggtcgaccaggattcccagggcctgggggaccgaaaggagacaaa
ggagacataggtcctccaggatatgcagctaagggggagaaaggagagcctggtatcatc
atggggcctgatgggagacctcagtacctcggtggcctggcaggaaagccgggcgagaga
ggaccccctggccctgtgggacctccaggtccatatggtccttcaggcctgaagggagag
attgggcttccaggtagaccgggtcggccggggctgaacggcgccagaggagagaaggga
gattcaggcagtggatctggatatggttaccccggtcctccaggtccaccgggcccccct
ggacctcctggaccttctgctcccatcgatagactcagaggatatgaggattactccagg
tactacccagctcttaaaggagaaaaaggtgatcgtggaccaccagggacacttgaaatt
ccaggtgtcgggtcaaactttgacatttacactttaaggaatgagatgaaaggtgaaaca
ggcagtccgggcttgaaaggagagaaaggagaaccgggcagaggatattatggagggagt
ggagtcggagccccaggagtgcctggacctcctggcccaaaaggcgactccatcattggc
ccaccaggccctcaggggccacctggtcaaccaggaagaggctatgatgggcaacctgga
ccaccagggccgcctggacctccaggaccatccttacctggagcttacaggggcacacag
actatcaatattcctggaccaccgggaccacctggagtgcctggactacctggacaatcc
tcaggggtgacagtgttgaggtcttatgacatcatgacagccaatgctagaagacaacct
gagggttctctggtgtacattatagaagaaacagatctctacttacgggtccgagatgga
gttcgccaagtccacctcgggaactacattgctttacccagtgaggatggtaatgaggtt
gcagctgtggagcccccaccagtcgtcccctactccccagaccaccactccaacaccgac
accttcacacacgactcccaaaggccaactgaggtccatcccgactctgggcatcggcca
gacccgcatcacccaacacacgtggaccctcgatacccatcaaaccctgatccccgttac
caacctgatgcacgatatcagccagatccgcggttcccagcacccacagatcccaggttt
ccaagttactcagaccggttaaatcaaccagacggtaggtattctgtccatgtgacccag
caacggcctgcatacccggacactcgctacgcagtcactcctcagagaagaccacctccc
cctgtggcccagagtccagtccaccatcatacttcaggtccagggctccacctgatcgcc
ctaaacagccctcagaccggctccatgcggggtatccgtggtgcagacttcatgtgcttc
actcaggctcaggccatcgggatgaagggaactttccgggccttcctgtccgccaaactc
caagatctccacagcattgtccgcaaggctgacagggaccgtgtgccaatagtaaacctg
aaggacgaggttctgtttgacagctgggacgccatcttcaatgacggcagaatgaaggac
aacgtgcagatctactcctttgatggcaaagacgttctcagtgacagcacatggccagag
aagatgatgtggcacgggtcaaccggcgccgggcagcagcatgtcgacagcttctgcgag
tcatggcgtgtgggcgaccgggcgctgactggcatggcgtcgtcgctgcagagtggcagt
ctgctccagcagagctccagcagctgctccagctcctacgtcgtgctgtgcgtcgagaac
agctacaccgtccacgccaagagatag
DBGET
integrated database retrieval system
