Siniperca chuatsi (mandarin fish): 122872229
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Entry
122872229 CDS
T08948
Symbol
fip1l1b
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122872229 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122872229 (fip1l1b)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122872229 (fip1l1b)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
122872229
NCBI-ProteinID:
XP_044044102
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Position
LG3:17480235..17491571
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AA seq
557 aa
AA seq
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MSAEEADKTANTDASAGDEEEEWLYGDESESKDEDEEAKLNAAVSAPADASTEDDAAHAT
GNGVASEATGEAAGEDVDSDSDSDDDDDDVRVTIGDIKTGAPQYTPYGAPPVNLNIKTTG
SRPYGQAAKLKGVDLDAPGNINGVPVLEAEMESFEEKPWRKPGADLSDYFNYGFNEDTWK
AYCEKQKRLRMGLEVSTVGSVTSKITVQQGRTGNEKDVSSLPVHTSKPDFVSPVSLYKSS
VTPHQVTRISPPQWPGPPVQDMSYYTKTSGTIDVIGGQLATISRVEGRRRHNVEGNNIQV
IAEQSDAEPTPAKIPPFFPPGPLPPNIPPPPFLPPPPNVSTAPPLIPAQXVNHRLPITVP
PPGFPPPPSGPPPIIPTMDSGHPGGYDGRSVPTYPFPQGAYPPPMAGGVPPPWPPLMDNS
KPWDYYPRRDDKRDKDRERPRERTHEREREREHSPSAMSYTSDEERYRYREYQERGYAER
HRDRSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRSKEGK
EASEEISADQENQEAME
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaagcggataaaacagccaacactgatgccagcgctggagatgaggag
gaggaatggctgtatggagatgagtctgagagcaaagatgaggacgaggaagccaaactg
aatgctgcagtcagtgcacctgctgatgcttcaacagaggatgatgctgcacatgctaca
gggaatggagtggcctctgaggccacaggtgaagctgcaggtgaagatgttgacagtgac
agcgacagtgatgatgacgatgatgatgtccgcgtcaccattggagacataaaaactgga
gcaccccaatacacaccttatggagctccgcctgtcaatctcaacatcaagacaacaggc
tccagaccttatggacaagccgccaagctgaagggagtggatctggatgctcctggaaac
attaacggggttccagtcctggaggcggaaatggagtcctttgaagagaaaccctggagg
aagccaggagcggatctgtcagactactttaactacggcttcaatgaagacacatggaag
gcttactgtgaaaaacagaagaggctgcgcatgggcctggaggtctctactgttggctcg
gtgacgagcaagatcactgttcagcaaggcaggacaggcaatgagaaggacgtttccagt
ttgcctgttcacacgtccaagccagacttcgtatctcctgtcagcctgtacaagtcctcc
gtcactccacaccaggtcaccaggatctctccccctcagtggcctggcccgcctgttcag
gacatgtcctattatacgaagacgagcggtactatagatgtgattggaggacagttggcc
accatcagcagggttgaagggcggcgcagacacaatgtagagggcaacaatatccaggtg
atcgctgaacaatcagatgctgagccgactccagctaagataccccccttcttccctcct
ggaccacttcctccaaacataccgccacctcctttccttcctccgccacccaatgtcagc
actgcacccccactcatccccgcccagtaagttaatcatcggttgcccattactgtccct
ccccctggttttcctcctccacctagtgggcctcctcctatcatccccactatggacagt
ggccaccctggaggttatgatggacgctctgtccctacctacccgttccctcaaggtgca
taccctccacccatggctggaggtgtgcctcctccttggccccccttgatggacaactct
aaaccctgggactactatccccgtcgagacgacaagagagacaaggacagagagaggccc
agagagaggacacatgagcgggagagagagcgggagcacagcccttcagctatgagctac
accagcgacgaggagcggtaccgttaccgtgagtaccaggagcgtggttatgcagagcga
catcgggaccggtcgagccgtgagaaagaggaaagacacagagagagacggcaccgagag
aaagaggagggacgccacaaatcctctcgcagcagtagcaggaggagacacgacagcgag
gagggcgacagccaccggaggcacaaacacaagaagagcaagaggagcaaggagggcaaa
gaggccagcgaggagatcagcgcagaccaagagaaccaggaggccatggagtag
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