Siniperca chuatsi (mandarin fish): 122872611
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Entry
122872611 CDS
T08948
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122872611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122872611
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122872611
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122872611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4
zf-C3HC4_4
zf-B_box
zf-RING_5
ANCHR-like_BBOX
U-box
ApoLp-III
DUF2140
Motif
Other DBs
NCBI-GeneID:
122872611
NCBI-ProteinID:
XP_044044673
LinkDB
All DBs
Position
LG3:complement(28607929..28624846)
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AA seq
676 aa
AA seq
DB search
MAEVDESQFSLMSLEDELTCSICLSTFDCPVTIPCGHNFCQDCLLATWKDSYSCPQCRTH
FATKPELKXNTVLSTVVETFNLRSTKSEARLTAEESKAEKEDVIRCDTCMEAEASQTCLT
CMASFCEEHLRPHRENPNFSLHQLSEPVGDLSERICSDHHKLMELFCTQHGRPICSFCLQ
QVHKGCPFVAPEEQRNLKEYDLRDKLGLLDGKIEKTKTVMLQMNDTQSKLKDTATKKKTA
LAAVYQQMRDMLAQEELKAQHEVDCELETGQTKLQDLMKKLIENSEKMRKAREDLDSLLS
QSHTLAFLQASFNLPKAIKFDPYTPRISLDSKKVTATQGFAAALKEHLTEILKQPVEARL
PILKPGECAELNTGIVASDEKAVPVSGPANTGNTGSQPKSELSEPQKQKKTRRSHSPGRP
PIQPYFQAVPVRNPYMGPHGGWNLSQHPQEPQWLPGNLFPSPHDPGSGSQPKGPKKRAQK
TSDIPPNITSAEKRTELLKYGTVLTLDPKTAHKRIALSEGFTKASISDEHTNYPDCPERF
AVCSQVLASKGFSRGRHYWEVRLSSSNFIGIGLAYSSIDRKGPTSRLGRNAQSWCVEWFN
IKLSAWYNSSETVLVNLNPKRIGVLLDCEEGTATFYNVADRVYPFHSFVFPFAEAVYPAF
WIFSSGSSISLCKLQA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagtggacgagagtcagttttctctcatgagtctggaggatgagctgacctgc
agcatctgtctgagtacctttgactgtccggtgaccatcccctgcggacacaacttctgt
caggactgcctcctggccacctggaaggactcctacagctgtcctcagtgtcggacccac
ttcgccaccaaaccggagctgaagnaaaacacggtcctcagcaccgtcgtggagaccttc
aacttgaggtcgaccaagagcgaggcccgcctgacagcagaggagagcaaagccgagaaa
gaggatgtcatacgctgcgatacatgtatggaagcagaggcgtcccagacctgcctcacc
tgcatggcctctttctgtgaggagcacctgcggcctcaccgggaaaacccaaactttagt
ctccaccagctgagtgagcctgtaggcgacctttcggagcgtatctgctcggaccaccac
aagctgatggagctcttctgcacccaacatggccgcccaatctgcagcttctgcctccag
caagtccacaaaggctgccccttcgtggctcctgaggagcagaggaacctgaaagagtac
gacctcagagacaagttgggtttgctggacgggaagattgagaagacaaagactgttatg
ttgcaaatgaatgacacgcagagcaagctgaaggacacagcaaccaaaaagaagacagca
ttggcagctgtgtatcagcagatgcgggatatgttggcccaagaggaactcaaggcccaa
catgaggtggactgcgagctggagactggccagacgaaactgcaggacctcatgaagaag
ttaattgagaattctgagaagatgagaaaagccagagaagatctagacagtctgctgagt
caatcccataccctggcctttctacaggcttcatttaacttgcctaaggctataaagttt
gacccttacacccctcgaatcagcctggactccaagaaggtgacagcaacacagggcttt
gctgctgccctgaaggagcatctgacagagatccttaaacagcctgttgaggccagacta
ccgatacttaaaccaggtgaatgtgcagaacttaacactggcattgttgcatctgatgaa
aaagcagttcctgtctcaggacctgcaaatactggaaatactggatctcagccgaaatct
gaactatcagagccccaaaagcagaaaaaaacgcgcaggtcccacagtccaggtcgtcca
cccatccagccatacttccaagcagttcctgtacgtaatccctatatgggaccacatgga
ggctggaatctatcccagcatccacaggagccgcagtggctgccagggaatctatttccc
agtccccacgatccaggttcaggttctcaacccaaaggcccaaagaagagagctcaaaaa
acttcggacattcccccaaacataacatctgctgaaaaaagaaccgaacttctgaaatat
ggcacggtactcactttggatccaaagacggcccacaaacgcatcgcactgagtgagggc
ttcactaaagcctctatttcagatgaacacacaaactaccccgactgccctgaacgcttc
gctgtctgctcccaggtgctcgcctccaagggtttctctagagggcgccactactgggaa
gtccgactgagcagcagcaacttcattggcattggcttggcttacagcagcattgaccgc
aaaggtcccaccagtcgactgggccgcaacgcccagtcctggtgtgtcgagtggtttaac
attaagctgtcggcttggtataatagcagtgagaccgtgctggtcaatctcaatccaaag
cgcataggtgtgctgttggattgcgaggagggcactgctacgttctataacgtggcagac
cgggtatatcccttccactcctttgtgttcccttttgctgaagctgtgtatccagctttc
tggattttctcaagtggctcgtccatttctttgtgcaagctgcaggcatga
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