Siniperca chuatsi (mandarin fish): 122872868
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Entry
122872868 CDS
T08948
Symbol
lef1
Name
(RefSeq) lymphoid enhancer-binding factor 1 isoform X1
KO
K04492
lymphoid enhancer-binding factor 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04310
Wnt signaling pathway
schu04520
Adherens junction
schu04916
Melanogenesis
schu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
122872868 (lef1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
122872868 (lef1)
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
122872868 (lef1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122872868 (lef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122872868 (lef1)
Transcription factors [BR:
schu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TCF-1
122872868 (lef1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNB1_binding
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
122872868
NCBI-ProteinID:
XP_044044852
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All DBs
Position
LG3:12837513..12882170
Genome browser
AA seq
381 aa
AA seq
DB search
MPQLSGGGGDPELCATDEMIPFKDEGDPHKEQIFAELSHSEEEGDLADIKSSLVNESESS
PNSNSHDATRQSQIPQDSYHEKHRDHPEDGKLQDMYSKGHPYSGYPGYIMMSNMNDSYMN
NGSLSPPMPRTSNKVPVVQPSHAVHPLTPLITYSDEHFAPGSHSGHHPQDANNKQVCLGM
PRHHPGPDMPNFYSLSPGGVGQITPPLGWFSHHMVPGPPGPHATGIPHPAIVNPQVKHEP
LHETDLMHMKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQIL
GRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKMQETATGGKRN
NFSTCKAKAAATGPLLEMEAC
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgccacagttatcaggcggcggcggagacccggagctgtgcgctacagacgaaatgatc
ccgttcaaagacgaaggagacccgcataaggagcagatcttcgccgagctcagccactcg
gaggaagagggagacctagcagacatcaagtcatctctggtgaacgagtcagagagcagc
cccaacagcaacagccacgatgcaactagacagtcccaaataccgcaagattcatatcat
gaaaaacacagagaccatccagaagatggaaaactccaagacatgtacagtaaaggccat
ccgtactcgggctacccaggctacatcatgatgagcaacatgaacgactcctacatgaac
aacggctccctctcgccgcccatgcccagaacgtccaacaaagtccctgtggtgcagccg
tcccatgcagtccacccactcaccccgttgatcacgtacagtgacgagcacttcgcccca
ggatcccattctggtcatcacccccaggatgccaacaacaaacaagtttgtctaggaatg
ccgaggcatcaccctggaccagacatgcccaacttctattccctgtctcctggaggagtg
gggcagatcacgccaccgctgggatggttctcacaccacatggtgcccggccccccaggt
ccccacgccacagggatcccccacccggccatcgtcaacccacaggtcaaacacgagcct
ctgcatgaaacagatctcatgcacatgaaaccccagcacgaacagagaaaggagcaggag
cccaaaagaccgcacatcaagaagcctctaaacgccttcatgctctacatgaaagagatg
cgtgcgaatgtggtcgcagagtgcacgctgaaggagagcgcagccatcaatcagatcctg
ggacgcaggtggcatgctttatctcgggaagagcaagctaagtattatgagttagcccgc
aaggaacggcagctccacatgcagctctacccaggctggtccgctcgagacaattatgga
aagaagaagaagcggaagagggagaagatgcaggaaacggccacaggaggaaaacgtaac
aatttctccacatgcaaagcgaaggcagcagctacgggccctctgctagagatggaggcc
tgttag
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