Siniperca chuatsi (mandarin fish): 122872989
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Entry
122872989 CDS
T08948
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122872989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122872989
03009 Ribosome biogenesis [BR:
schu03009
]
122872989
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122872989
Spliceosome [BR:
schu03041
]
Complex A
U2 snRNP components
U2 related factors
122872989
Complex B
122872989
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122872989
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
90S particles
Helicases
122872989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
Flavi_DEAD
nSTAND3
Atrophin-1
AAA_29
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
122872989
NCBI-ProteinID:
XP_044045120
LinkDB
All DBs
Position
LG3:complement(13940957..13949628)
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSASKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDKDPKPSSVP
SNSTVAEPILPPLKQMAMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFSDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRADLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMSNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagagacaccgtctggatttgggtgatgactactccgccagtaagaagaggtct
gaagggagagacagggaccgtgacagagatcgtgaggaccgttccagggacagggaccga
gatagggaccgggacagggacagagaccgggacaaagacccgaagccttctagtgtcccg
tctaacagcacggtggccgagccaatcttgccacccctcaagcagatggccatgcaccag
cagatcaacccattcaccaacctgccgcacactccacgttactacgagatcctgaagaag
aggttacagcttccagtgtgggagtacaaggagaggttcagtgatatcatcacacgtcac
cagagctttgtccttgttggagagactggctctgggaagacaacacagatcccacagtgg
tgtgtggacatggtgaggggcttgcctggccctaagcgtgcggtggcctgtactcagccc
agaagagtggcggctatgagtgtggctcaaagggtggcagacgaaatggacgtaatgctt
ggacaggaagtcggctactccatccgatttgaggactgtagctctgccaagactatactc
aagtacatgacagatggtatgttactaagagaggctatgaatgacccgctgctggagcga
tatggtgtgatcattctggacgaggcccacgagcgaactctggccacagatatcctgatg
ggagtactcaaagaggtggtgcgtcaaagagcagatttgaaggtgatcgtcatgagtgcc
acgctagatgccgggaagttccaggtgtacttcgacaactgccctctcctgactattcct
gggcgtacacaccctgtagagattttctacactcccgaaccagagcgagactaccttgag
gcagcgatccgcaccgtcatccagattcatatgtgtgaggaagatgaaggtgactgcctt
ctctttctcactggtcaagaggaaattgatgaggcctgcaaacggatcaagcgtgaggta
gatgaccttggacctgaagttggagacatcaaaatcatcccactgtattccacattgcca
ccacagcagcagcaaaggatctttgagccgcctcctccaagaaagcccaacggtgcaata
ggaagaaaggttgtggtttcgacaaacattgctgagacctctctgacaattgatggggtg
gtgtttgtcattgatcctggatttgccaagcaaaaggtttacaatccccgtatcagagtt
gagtccttgctcgtcacggccatcagtaaagcttctgcccagcagagggcgggacgagcc
ggcagaacacgtccggggaaatgtttccgcctctacacagagaaggcctacaaaacagag
atgcaggataacacataccctgagattcttcgatccaacttgggatctgttgtgctgcaa
ctgaaaaagctgggtatcgatgaccttgtgcactttgacttcatggatccaccagctcct
gagacactgatgagggcccttgagctgctgaattacctggcagctctcaacgatgacggt
gacctgacggagctggggtccatgatggcagagtttcctttggacccccagctggctaag
atggtcattgccagctgcgagtttaactgctctaacgagatcctttccattactgccatg
ctgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgcgcacatcgacggagaccacttgacgctgctcaacgtctaccacgcc
ttcaaacaaaaccatgagtctaatcagtggtgctatgacaactttgtcaactaccgttca
ctgatgtctgctgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaaccta
ccccgccggagcacagagttcaccagcagagattactacatcaacatccgccgagcgctt
tgcaccggcttcttcatgcaggtggctcatttggagcgcacaggccattacctcacagtc
aaagacaaccaagtggtccaactgcacccatctacagtcttggaccacaagcctgagtgg
gtgctctacaatgaatttgtcctcaccaccaaaaactacatccgcacttgcacagacatc
aaaccagagtggctggtgaagattgcaccccagtactatgaaatgagtaacttcccacaa
tgtgaagctaaaagacagctggagcgaatcattgccaaactagagagcaaggagtattcc
cagtactga
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