KEGG   Siniperca chuatsi (mandarin fish): 122872991
Entry
122872991         CDS       T08948                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1-like isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
schu  Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:schu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:schu03041]
    122872991
Spliceosome [BR:schu03041]
 Complex B
  Other components
   Complex B specific factors
    122872991
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_EML EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_Nup120_160 LisH_TPL Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C Ge1_WD40 Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_IP5PC_F WD40_RFWD3 TFIIIC_delta VPS8_N Beta-prop_WDR11_2nd DUF7165
Other DBs
NCBI-GeneID: 122872991
NCBI-ProteinID: XP_044045124
LinkDB
Position
LG3:14049974..14062415
AA seq 645 aa
MVPKGEHALSHGVLSVVLMSPAHNVPRKCFFYISACIRGVCVRVCVCVCGGGGSSKTLCG
SGSHRVWDCFQPKKKKKKNARHKRSTCSGWSSADDFHVALASAEPELSRHNVLVRCGNRR
RQHQHGCGDGALGVSALPFWGFCVIRLIMQYLKENNLYRTLTTLQEETTVSLNTVESIDS
FIADIKSGHWDSVLLAIESLKLPDNTLIDLYEQVVMELIEMREVGAARSLLRQTDPMIML
KQTQSERYIHLENLLTCSYFDPREAYPKGSSKEKRRREIAEALVREVSVVPPSRLMGLLE
QVGSMRLEQSPGHLSPDMAIETSGNKERHVEKESFPTQLYRHIKFGRRSHVECARFSPDG
KYLITGSVDGFIEVWNFKTGKISKDLKYQAQDSFMMMDDAVLCMCFSQDTDLLATGAQNG
KIKVWKIQSGLCLRRFEHAHNKGVTCLSFSKDSNQILSASFNQTIRIHELRSGKTLKELN
GHSSFVNDASFTQDGFHIISASSDGTVKIWNTKSCECIHTFKSLSGTSELPVNNVIPLPQ
NPEHFVICNHSNTVVIMNMHGQTVKTFSSDKKEGADFVCCTLSPRGEWIYCVGEDLVLYC
FNYMTGRLQKTLTVHEKVVIGIAHHPHENLIATYSEDGLLRLWKP
NT seq 1938 nt   +upstreamnt  +downstreamnt
atggttcctaaaggcgagcacgcgctgagccacggggttctgtccgtggtgctgatgtct
cctgcacacaacgtgcccagaaaatgtttcttctatatatcggcatgcattaggggggtg
tgtgtacgtgtgtgtgtgtgtgtgtgtggaggggggggtagctccaagactttatgtggc
agcggcagtcacagggtttgggactgcttccagccgaaaaaaaaaaaaaaaaaaaatgcg
agacacaagagaagcacgtgtagtgggtggtcctcagcagacgactttcacgtggctcta
gcgagcgcagagcccgagctgagccgccacaacgttttagtccggtgcggcaacaggagg
agacaacatcagcatggctgcggagatggagccctcggagtaagtgcgcttcccttttgg
ggtttttgtgtgatccgcctgataatgcagtacctcaaggagaacaacctctaccgaaca
ctgaccaccttacaggaggaaaccaccgtctcactcaacacagtggaaagcatcgacagt
ttcatagcagatataaagagcggccactgggactccgtgctgctggctatcgagtccctc
aagttgcccgacaacacacttattgacctttacgagcaggttgtaatggagctcattgaa
atgagggaggtgggagctgctcgctcactcctcagacaaaccgaccccatgatcatgttg
aagcagacgcagtcagagaggtacatccatttggagaacctgctaacatgctcctacttt
gacccccgagaggcatacccgaaaggcagcagcaaggagaagcgccgcagggaaatagcc
gaggcgctggtgagggaggtcagtgtggtgcccccttctcgcctcatggggctcctggaa
caagtcggttctatgagactagagcagtcaccgggtcatctctcccccgacatggctatt
gaaacatctggcaacaaggagagacatgtggagaaagagagctttccaacccagctgtac
cgccacatcaagtttggacgacggtcacatgtggagtgtgcccgtttctctcctgatggc
aagtacttaatcactggatcggtggacgggttcattgaggtctggaactttaaaacagga
aaaattagtaaggatttaaagtatcaggcccaagatagcttcatgatgatggatgatgct
gtgctgtgtatgtgcttcagtcaggatacagatctactggcaactggagctcagaatggc
aaaataaaggtgtggaagatccagagtggcttgtgcctgcgcaggtttgagcatgcccac
aacaaaggtgtgacctgtctgagtttctccaaagacagcaaccagatcctcagtgcctcc
tttaaccagaccatcagaatccatgaactaaggtcaggcaagacactaaaggagttaaat
ggccattcatcgtttgtaaatgatgcatctttcactcaagatggatttcacatcatcagt
gcctcatctgatggcacagttaagatttggaatacaaaatcctgtgaatgcatccacact
ttcaaatctctgtctgggacatcagaactccccgtcaacaatgtgattcctctaccccaa
aatccagagcactttgtgatttgtaaccactccaacacggtggtcatcatgaacatgcac
ggtcagactgtgaagaccttcagctcagataaaaaggaaggagccgactttgtatgttgc
accctgtcaccccgcggggagtggatttactgtgtgggagaggacttagtgctgtactgc
ttcaactatatgacgggaaggctgcagaaaacgctgaccgttcacgagaaagttgtaatt
ggcatcgctcaccacccacatgagaatctgattgccacatacagcgaggatggcctccta
cggttatggaaaccttaa

DBGET integrated database retrieval system