KEGG   Siniperca chuatsi (mandarin fish): 122873153
Entry
122873153         CDS       T08948                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:schu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    122873153 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:schu03021]
    122873153 (taf5l)
   03036 Chromosome and associated proteins [BR:schu03036]
    122873153 (taf5l)
Transcription machinery [BR:schu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     122873153 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     122873153 (taf5l)
Chromosome and associated proteins [BR:schu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     122873153 (taf5l)
    STAGA complex
     122873153 (taf5l)
    TFTC complex
     122873153 (taf5l)
    SAGA complex
     122873153 (taf5l)
    SLIK complex
     122873153 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd TFIID_NTD2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st WDR90_beta-prop_4th NBCH_WD40 DSE1_N Beta-prop_Aladin PAC11 ANAPC4_WD40 Beta-prop_RIG_2nd CFAP251_N Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_NOL10_N RMC1_N Beta-prop_HPS5 Beta-prop_EIPR1 Tricorn_2nd Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_Vps41 ASA1 Beta-prop_WDR19_1st PEP5_VPS11_N WD40_like Nbas_N PROPPIN Beta-prop_IP5PC_F WD_LRWD1 BCAS3_WD40 PD40 Beta-prop_ELP1_1st Lysis_col
Other DBs
NCBI-GeneID: 122873153
NCBI-ProteinID: XP_044045458
LinkDB
Position
LG3:complement(3243091..3248563)
AA seq 600 aa
MKRVRTEQIQYAVTQYLKRRQYVDTDGSPKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPQQYETQYSRLRSFLSETEISWAKEVSSILYPLFVYLHLDMVRCGLKGAVDGFYS
RFHSAFLQDSEQRATVEQLPRVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTASRCTDYQLYGAASGATAAPNSTSSWAGVGGTEGREGVEVP
AGIPQSEAALEALQDCIKKVREGPPTLTTVCFYAFHHTEQMLNTADVSADSRLLAAGFDS
STVKLWSLRARKLKAKPHQADVSLIHLACDVLEEEVDEEDGSGSEIKTLRGHSGPVFRTA
FLTDSSGLLSCSEDTTIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGSSVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHGGTPADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKTEQ
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaagcgggttcgcactgagcagatccagtatgccgtgactcagtacctgaagcggagg
cagtatgtagacactgacggctccccgaaaggagccaagctcttccagtcagccgaggag
atggctgccagcctcacagtgcagacagagtcgggttgcgccaacatcgtctctgcagca
ccgtgccagtccgacccacagcagtatgagactcagtactccagactgcgctcctttctg
tcagaaacagaaatatcctgggcaaaggaggtgagcagcatcctctacccgctcttcgtc
tacctccacctggacatggtgcgctgcggcctgaagggggcagtagatggtttttacagt
cgtttccacagcgcctttcttcaggacagcgagcagcgtgccaccgtagagcagctcccc
cgtgttctcaccgctcaggacgttgcagccaaccccaagctgagtgctttcctggagcac
aagtacgtggttcacctgacagagccggcctacagctacctgctgcgttacctgcagagt
gaggacaacagcgccctctgcagggccctcagcacacacctgcaggtggaggtcaccgcc
tccaggtgtacagactaccagctgtatggagctgccagcggggcgactgccgccccaaac
tccacctcctcctgggcaggagtgggcgggacagagggcagggagggggtggaggttccc
gcagggatcccacagagtgaggcggccctggaggctctgcaggactgcatcaagaaagtc
cgcgagggcccccccacgctcaccaccgtgtgtttttacgcttttcaccacactgagcag
atgctgaacaccgccgatgtctcggctgacagccggctgctggccgccggctttgacagc
tcgacggtgaagctgtggagcctccgagccaggaagctgaaggccaaaccgcatcaggct
gacgtgtcgctcatccacctggcctgtgacgttctggaggaggaagtggacgaagaagac
ggctccggcagcgagataaagacgctgcgaggtcacagcggcccggtgtttcgtaccgcc
ttcctgacggacagctccggcctgctctcctgctctgaggacacaaccatccgctactgg
gacctgggtagcttcaccaacaccgcgctctaccagggccacgcctacccggtgtgggac
gtggacgtcagcccctgcagcctttacttcgccagcggctcccacgaccgcacggcccgc
ctctggacgttctcccgcacttacccgctgcggctttacgccgggcatctcgccgacgtc
gactgtgtgaaattccatcccaactccaactacctggccaccggctccacagacaagact
gtccggctgtggagcacccagcaggggtcgtctgttcgcctcttcactggccaccgtggc
ccggtgctgtcactcgctttctcacctaacgggaagtacttggcgtccgccggggaggac
cagagggtgaagctgtgggacttggcatcggggacgttgttcaaagacctgcggggacac
acggacagcgtcaccagcctgtctttcagcccggacagcagcctggtggcgtcgtcgtct
atggacaactcagtccgggtgtgggacatccggaactcccacggcgggacaccagctgac
ggctcgtccagtgaactggtgggactgtacactggaaacaccagcaacgtgctgaacgtc
cagttcatggcctgcaacctgctgctggtgacgggaactgcacaagagaaaacggaacag
tag

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