Siniperca chuatsi (mandarin fish): 122873551
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Entry
122873551 CDS
T08948
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
schu04990
]
122873551
Domain-containing proteins not elsewhere classified [BR:
schu04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
122873551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
122873551
NCBI-ProteinID:
XP_044046316
LinkDB
All DBs
Position
LG3:10114481..10144082
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AA seq
1746 aa
AA seq
DB search
MASPVAGRDVPNAPPRDEPERLDPNRPEPACQEAQKWIEAVTGKSFGDKDFCSGLENGIL
LCELLSAIKPGLVKKINRLPTPIAGLDNLSVFLRGCEELGLRGSQLFDPGDLQDTSIRAN
LKDSDYNRKLKNVLNTVFWLGKAASGCASYSGPTLNLKEFEGLLAQMKMEAEEGGDNPQK
RSVRDSGYDCWDSERSESLSPPRHTRDNSLDSLDSFGSRSQHSPSPDVVNRGNSDGRGSD
SEADGPSRKPDVRKDDMLARRTASSEARSSIPFNQFLPNRTNASSYIPTPRRKSHTEEGE
QRSHLQATPEQGKRTGPHHKTPKTVTWAPENNGGKLKQEEEKVTQEVLDQRKLQKLEKAG
IKVLPAAVRYSSPPTMEEQKVRSPSPNIILRCDNDFLSSQKSAWDSSSDVEEEAEVRKVP
DVRRDDLASRRAHRGPVAPKVHQFVPPPVCSNKDRERWEGIRRASQQTLQEKEISENEAV
PDIITRRDNPFLNSTSRHEEEEDEGEEGKVKATPNKQKDDLAQRRAQSRPLSHRDGPMSF
VSASMSQADLQKWERLKMTEPSEPSPAPVCQACLEKNYGSPFSGSAKAGRGHSKVVTFGG
VTEIEQPIDTVTSSEGEETELLRRLLSKATVAMPTIGLGSQLSERERSQVDAADLNQTTP
PSADLPPWTPETPPTLAELDARLAQYERRTEEGDEDEEDRIPDLQKDDMMARRTGVFHKQ
STATVTYNRFLPLPSSKRSTQGQVTTDAAPRNKREVQADRSKKLNTRVEQQQPRVPMETP
QPRPDSTVIRATSHSEREYDDEDEYDENEPVPDLEKDDMMARRTGSFQKPSAARTNQSIN
QFLPVPGSVKYNIAPVSAMKPLHSRPKVIEKIASESSIVTMAAEPQATPSKAPTLTKCAG
LRERQEEDGKQEGDMTIPNTSVTDVTEPPSSPSLTPPPSPATCEVEAELEKQSVEEKVEE
RKRDVNEEPRKKPFWLDDDDLPPMMMSRRVAFMSEDTESVSMSDMLNEEEVGHLPPLSQS
RYERMQEQYNNFLEDEDHWRNDLARWKNRRRSASQELIKKEEERKRMEKRMKGEGFDSNK
RKSIKTYKEIVEEKERREAELCEAYRNAATPEEAAMVLQRYALRFTISDATLDSLKLPRS
TSKPKQDLKQVDTEHKTASPVNESETSEPLHKPEPTVITDQSHTKPEEIHTDTTAQQVTS
VSVSSSSPTPGSPLTPVTNSEIVPPQSLQLNEPQSKPTESTTTHQKQQITGDAMPQTKHT
PPQIAQVQPHTTQPVHTLPSPPSTSARPVPLLAAKPYCQPRNTQSGHKPVKMDGLVRVNG
EVMEDLSLSTPPSSARHSPKAIKDVPSKQTEKDVPSEQTATNQEAVEQTPPPQTEKSTPS
SGSAISSLIGGRNCIITTTIVTELTQTHVEPHHPDIQSNGQVNGTMGLSGIPVEEKKAQP
ATSPTSMQEYSPTVTDGLEESSVTIETPMLNLAKRVNHWVWDPNEERKRLEMWQQEQERL
LQEQYQKEQEKLKKEWEKAQLEVQEEERKHNEEERRILEETVMPLKPTGLLNQQPDQTGM
ISSAPENNETEGGNIPLQQNGQRISTGTEDQHASKLHFFQDEIHAEIHTDSACDGEPSKK
QELLKTASLDRNPQLNQAHIVKRSESHDAVTSKQQSSPSSPQPPSPSRCVSGKRLCSGCS
QPLGKGAAMIIDTLGLFFHIQCFKCGVCNGQLGDATAGTDVRIRNGLLSCHECYIASRGR
GQPTTL
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggctagccccgtagcaggtcgagatgtcccgaatgccccgccgcgggacgagccggaa
cggttggacccgaaccgtcccgaaccagcctgtcaggaggcacagaaatggatagaggct
gtaacagggaagagctttggagacaaggacttctgcagcggactggagaacggcatcctg
ttatgcgagctgctgagtgcaatcaaaccagggctggtcaagaagatcaacaggctgccc
actcccatcgctgggctggacaacctgtcagtcttcctgcggggctgtgaggagttgggc
ctgaggggctcccagctgtttgaccccggggacttgcaagacacttccatacgagctaac
ctcaaggactctgactacaaccgcaaactaaaaaatgtgctgaacacagtgttctggctg
gggaaggctgccagcggctgcgcctcctacagcggccctactctcaacctcaaggagttt
gaagggcttcttgctcaaatgaagatggaggccgaggaaggaggggacaatccacagaag
cgcagcgttagagacagcggctatgactgctgggactctgagaggagtgagtctctctct
ccaccacgacacactcgcgacaactccctagacagtctggactcctttggctcccgctca
cagcacagcccttctcccgatgtggtgaatcgaggcaacagtgatgggcgagggagcgac
tcggaggctgatggccccagcaggaagccagatgtgcggaaggatgacatgttggccaga
cggactgccagcagtgaagcaagaagctccattccctttaaccagtttcttcccaaccga
accaacgccagttcctacatcccgactccacggcgaaaatcacatacagaggagggagag
cagcggagtcaccttcaagccactccagagcagggcaaaaggactggaccgcaccacaaa
acccccaagactgtcacttgggcacctgagaacaatgggggaaaactaaaacaggaagag
gagaaggtgacccaggaagtgttggatcagaggaagctgcagaagttagagaaggcaggg
attaaagttctgcctgctgccgttcgctacagcagccctcccacaatggaggaacaaaaa
gtgaggtcgccgtccccgaacatcatccttcgctgcgataatgactttttgagctctcag
aaatctgcgtgggactcctcctctgatgtggaagaggaggcagaggtgcggaaagttccg
gatgttcgtagagatgacctggcatccagacgagctcatcgcggccctgttgctcccaaa
gtgcatcagtttgtccctccgcctgtatgtagcaacaaagacagagagcgctgggaaggc
attagacgagcctcacagcaaacgctgcaggagaaggagatcagtgagaacgaagcagtc
cctgacatcattacacgcagagacaaccccttcctaaactccacctctcgccacgaggaa
gaggaggatgagggagaagagggaaaggttaaggcaacacctaataagcagaaggatgac
ctggctcaaaggcgggctcaaagtaggcccctctctcacagggacggaccaatgagcttt
gtttctgcctccatgagccaggcagatttgcagaagtgggagagactcaagatgactgaa
cccagtgagcctagcccggcccctgtgtgtcaggcttgtctggagaaaaattatggaagc
cctttcagcggatcagccaaggctggacgaggtcacagcaaagttgtgacctttgggggc
gtgactgagatcgagcagccaatagacacagtcacgtcaagtgaaggggaggagacggag
ttgctaagacgactcctttccaaggcaactgtagccatgcctaccattggcctgggctcc
cagctttcagagcgggaacgcagccaggtagatgcagctgacctcaatcaaactaccccg
ccctctgctgacctcccaccctggacccctgaaacccctcctactcttgctgagctggat
gcacgtctggctcagtatgaacggagaacagaggagggggatgaggatgaagaggacagg
atcccagatctccagaaagacgacatgatggcgaggaggacaggagttttccataaacaa
agcactgccacagtgacgtacaaccgtttcctgcctctgcccagctccaaacgcagcaca
caagggcaggtcaccactgatgctgctccacggaacaaaagggaagtgcaggcagacagg
agcaagaaactgaacaccagagtggagcaacagcaacccagagttcccatggaaacacct
caaccgcgccctgactcgactgtgatccgagcaacttctcacagcgaacgtgaatatgat
gatgaggatgagtatgatgaaaatgagcctgtgcctgacctggagaaggacgacatgatg
gctcgcaggaccgggtcattccaaaaaccgagtgcagccagaacaaatcagtccatcaac
cagttcctgccagtacctggatcagttaaatataacatcgccccagtgtctgcaatgaag
ccactacacagcagacctaaagtcatagagaagatagctagtgaaagcagcatcgttacc
atggcagcagaacctcaagccacaccctccaaagccccaacccttactaagtgtgcaggg
ctgagggagaggcaagaggaggacggaaagcaagagggagacatgacaatccctaacacc
tctgtcacagatgtgactgagcccccctcctctccatcgctcacccctccacccagtcct
gctacttgtgaagtggaggcagagctggaaaagcagagtgttgaggaaaaggtggaagag
agaaagagggatgtgaatgaggaaccacggaagaaaccattctggctggatgacgatgat
ctacctcccatgatgatgagccggcgagttgcttttatgtctgaggacactgagagtgtg
agcatgagtgacatgcttaacgaggaagaggtgggacacttaccgccactgagccaatca
cgatatgagcgcatgcaagaacagtacaacaattttctggaagatgaggaccactggcga
aacgacttggctcgctggaagaatcgccgtcgcagtgcgtcacaggaactgatcaagaaa
gaggaagagaggaagaggatggagaaaaggatgaagggggagggatttgacagcaacaag
aggaaaagcatcaagacctacaaagagatcgtggaggagaaagagcgcagagaggcagag
ttgtgtgaagcctacaggaatgcagcgactccagaagaggccgccatggttttacagcgt
tacgctcttcgctttaccatcagtgacgcgacactggacagcctaaaactacctagatcc
acttcgaaacccaaacaggacctaaagcaggtggacacggagcacaaaacggcatcacct
gttaatgagtctgaaacatcagaacctctgcacaaaccagaaccaactgttataacggac
cagagccacacaaaacctgaagagatacacacagatacaactgctcaacaagtgacatca
gtttctgtctcctccagctccccaacacctggcagtcccctcaccccagtcacaaactca
gaaattgtgccacctcagtcactacaactaaatgaacctcagtccaaaccgacagagtct
acaaccacacatcaaaaacaacagattacaggagatgcaatgcctcaaaccaaacacact
ccgcctcagattgcacaagtgcagcctcacaccacgcagcctgtacacacactcccctcc
cctccatctacatccgccagacctgtccccctgctggcagccaagccttactgccagccc
aggaacacacagtctggacacaaacctgtcaagatggacgggttggtgcgagtgaacgga
gaggtgatggaagatttatctctttccaccccaccttcctctgctcggcactcgccaaag
gcgatcaaagacgttccctccaaacagacggagaaagatgtcccctccgagcagactgcg
accaatcaggaggcagtggagcagacgccacctccacagacagagaaatcgaccccgtct
tcgggctctgccatcagctccttgattggaggtcgaaactgtatcatcacgacaactatt
gtgactgagctcacacagactcatgtggagccacatcacccggatatccaaagcaatgga
caggtcaatggtactatgggattatctgggataccagtggaggaaaaaaaggctcagcca
gctacatcaccaaccagtatgcaagaatattctcccactgtcacagatggacttgaggag
agcagtgtgactattgagacccccatgttgaacttggctaaacgtgttaatcactgggtc
tgggaccccaatgaggagcgtaaacgcctggaaatgtggcagcaggagcaggagcgcctc
ctacaggagcaataccagaaggaacaggagaagctgaagaaggagtgggagaaagcacag
ctagaggtgcaggaggaggagagaaaacacaatgaagaggagagaaggattctagaggag
actgtaatgcccctcaaacccactggcttgttaaaccagcagccggaccagacagggatg
atttcatcagctccagaaaacaacgagacagagggaggaaacattcctctccagcaaaac
ggccaaagaatctccacagggactgaggatcagcatgcatcgaagctgcatttcttccag
gatgagattcacgcagaaatacacactgattctgcgtgtgatggtgaaccttcaaagaaa
caggaactgttgaagacggcctctctggaccgcaaccctcagctaaaccaggcacatatt
gttaaaaggtctgaatcacatgacgctgtaacaagcaaacagcagtcctccccttcatcc
cctcagcctccctcacccagcaggtgtgttagtgggaagagactgtgttctggttgttct
caaccactgggaaaaggagctgccatgatcatcgatacactgggactgtttttccacata
cagtgtttcaagtgtggagtgtgtaatgggcagctgggtgacgccactgcagggacggac
gtacggattcgtaatggacttctgagctgtcatgagtgctatattgcatctcggggcaga
ggtcagcccaccacactatga
DBGET
integrated database retrieval system
