Siniperca chuatsi (mandarin fish): 122873598
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Entry
122873598 CDS
T08948
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122873598 (htt)
04131 Membrane trafficking [BR:
schu04131
]
122873598 (htt)
03029 Mitochondrial biogenesis [BR:
schu03029
]
122873598 (htt)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122873598 (htt)
Membrane trafficking [BR:
schu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122873598 (htt)
Mitochondrial biogenesis [BR:
schu03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122873598 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
122873598
NCBI-ProteinID:
XP_044046447
LinkDB
All DBs
Position
LG3:25885790..25918266
Genome browser
AA seq
3197 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
SPGSRTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELY
KEIKKNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLARITKRQEETVQETLAAA
MPKIMAALGHFANDGEIKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRTSYFYTWL
LNVLLGLLVPVDEEHPSHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVMRKEADVQPTP
GQLLQVYELTLHYTQHWDHNVVTAALELLQQMFRTPPPELLHMLITAGSISHGTVFRQDT
ESRARSGSILELIAGGGSSCSPLLLRKQRGKMLSGEEDGLEDDAERTEVTTGAFTASVVG
AEGSSTAQVDIITEQPRSSQHTLQPGDSVDLSASSEQGGGEGGTSASDTPESPNDNEEEM
LSRSSSGGANITPETADYTTPENTMPEGGPLGEGGTLLGTNDRSLPPSDSSQTTTEGPDS
AVTPSDVAELVLDGSESQYSGMQIGTLQDEEDEGAAPATQEEPPEPFLQSALALSKPHLF
EGRGHNRQGSDSSVDRFIPKDEPAEPEPDNKPSRIKGPIGHYTDQGVEPLVHCVRLLAAS
FLLTGQKNGLTPDKEVRVSVKALAVSCVGAAAALHPEAFFNSLYLEPLDGIPVEEQQYIS
DMLGLIDHGDPQIRGATAILCAAIIQAALTKTRYNIHTWLASVQSATGNPLSLVDLVPLL
RKTLKDESSVTCKLACSAVRHCIMTVCSSTLSELGLQLVIDLLALRDSSYWLVRTELLET
LAEMDFRLVNFLERKTETLHKGDHHYTGRLRLQERVLNDVVIRLLGDDDPRVRHVAASAV
SRLVPRLFYDCDQGQVDPVVAIARDQCSVYLQLLMHETQPPSQFTVSTITRTYRGFNLSN
TVSDVTLENNLSRVVTAVSHAFTSSTSRALTFGCCEALCFLALSFPVCTWSTGWHCGYVS
SSSSFSSRSSLNRSRGRALSLSQPSGAPASSTTSSSAPDTERRTLTVGMANMVLSLLSSA
WFPLDLSAHQDALLLSGNLLAAVAPKCMHNPLAGEEEGSNGSTNTSGPNKMEEPWAGLSE
RYLVAMVEQLFSHLLKVLNICAHVLDDTPPGPAVKATLPSLSNTPSLSPIRRKGKEKEAA
EPSAAPMSPKKSNEVNTGRPADSTGSTAINKSTTLGNFYHLPPYLKLYDVLKATHANYKV
TLDLHSSQEKFGGFLRATLDVLSQLLELATLHDISKCVEEILGYLKSCFSREPTMATVCV
QQLLKTLFGTNLASQYEGVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALAD
ASLRNMVQAEQEQDTSGWFDVMQKASNQLRSNIANATRHRGDKNAIHNHIRLFEPLVIKA
LKQYTTSTSVALQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEA
IIPNIFFFLVLLSYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL
RGSNKADAGKELDTQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD
IILPMIAKQQMHLDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTTPATMASVATVQLW
VSGILAVLRVLVSQSTEDIVLSRVHELSLSPHLLSCHAIRRLHQQSPSPNDTLGNQEPNG
EAQKALPEETFARFLLQLVGVLLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVFKS
GMFRRITAAASRLLKGESGGGLPSTEADLFYPLEGLNSMVQCLITTHPSLVLLWCQVLLI
INYTNYSWWAEVHQTPKRQSLSCTKLLSPHSSGEGEEDKPETQLAMVNREIVRRGALILF
CDYVCQNLHDSEHLTWLIVNHVRDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCD
NLTTPTMLKKTLQCLEGIHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRRVEMLLAE
TLQNSIAQLPVEELDRIQEYLQTSGLAQRHQRFYSLLDRFRATVADTSSPTPPVTSHPLD
GDPAPAPELVIADKEWYVALVKSQCCLRGDVSLLETTELLTKLPPADLFNIMSCKEFNLS
LLCPCLSMGVQRLARGQGSLLLETSLQVTLEQLAGVTGSLPVPHQSFLPPSQPQPYWGQL
ADVYDEPGFYPRVLSLCRALSQYLLSVSQLPSSLHIPSDKEQLITTFTCTAAEVVVWRLL
QDHLPLSVDLQWALSCLCLALQQPCVWNKLSTPEYTTQTCSLIYCLRLIIVAVAVSPGDQ
LLHPEKKKTKAERDAEGDQVDSAHADHMCEWQACEIMAELVEGLQSVLALGHHRNSAFPA
FLTPTLRNIVISLSRLPLVNSYTRVPPLVWKLGWSPQPGGEYGTTLPEIPVDFLQEKDVF
REFLYRINTLGWSSRTQFEETWATLLGVLVTQPIAMDHEEETQQEEDLERTQLNVLAVQA
ITSLVLSAMTLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKR
DNVHTHHPYHAWDPVPSLSAASAAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWL
GNNITPLREEEWGEDEEDEADTPAPTSPPLSPINSRKHRAGVDIHSCSQFLLELYSQWLI
PGSPSNRRTPTILISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLV
PAICKAAAVLGMDKAIAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLI
PTVSEYLLSNLRAIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGVIQLCGVMV
SANEDSTPSVIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLML
TCMYTAVLASGSDVTGVRGQVDSGSAVAEAVGVTAGHVGFSSGKEKASPASRPAHSDPQA
PDSESIIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDIMNKVIGEFLSNQ
QPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSAST
SQWISALLPHVISRMGSSEVVDVNLFCLVAVDFYRHQIDEELDRRAFQSVFETVASPGSP
YYQLLGCLQSIHQDTSL
NT seq
9594 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactgatgaaggcctttgagtctctgaagtcattccagcagcaa
cagggaccaccaaccgcagaagagcttgtccagaggcagaaaaaggaacaggctaccaca
aagaaggacagggtcacccactgcctgacaatatgtgaaaacattgtggctcagtctctg
agtcctgggagcagaacgtctccagagtttcagaaactgcttggcatcgccatggaaatg
ttcctgctctgcagtgatgacagcgaatcagatgtccgtatggtagccgatgagtgcctg
aacaaaatcatcaaagcgctgatggactccaacctgcctagactgcagctggagctgtac
aaagaaattaaaaagaacggtgcctctcggagtctgagggcagctttgtggcggtttgct
gagcttgcccacctcatcagaccacagaaatgcagaccatacctggtcaacttgttgcca
tgcctcgccagaatcaccaagcggcaggaggagacagtacaggagacgctggctgctgca
atgcccaagatcatggctgccttgggacacttcgcaaatgatggcgagatcaaggtgctg
ctgaagtcttttgtggccaacctgaagtccagctcccccaccatcagacggacagcagcc
agctcagccgtcagtgtgtgccaacactccagacgcaccagctacttctacacctggctc
cttaatgtgctgctgggtctgctggttccagtggatgaggaacaccctagccacctaatt
ctgggggtgctgttaactcttcgctacctgatgcctctgctgcagcagcaagtcaacacc
accagcctcaaaggaagctttggagtcatgaggaaggaagctgatgtacagccaacacct
ggacaactgctgcaggtgtacgagctgaccctacactacacacagcactgggatcacaat
gtggtcacagcggctctggagctcctgcagcagatgttcaggactcccccgccagagctt
ctgcacatgctcatcactgctggcagcatttcacacggcactgtgtttcgccaggacact
gagagccgtgcacgctccggcagcatcctcgagcttattgcggggggagggtcttcctgc
agtccactccttctcaggaaacagagaggtaaaatgctttctggggaggaagatgggttg
gaggatgacgctgagagaacagaggtcaccactggtgccttcacagcgtcagtcgttggt
gcagagggctcctccacagcccaggtggacatcatcaccgagcagccacgctcctcccag
catactctgcagcctggcgactccgtggacctcagtgcctcctcagagcagggtggcggg
gaaggtggaacatctgcatcagacactcccgagtcacccaacgacaacgaggaggaaatg
ctgagtcgtagctccagcggcggggccaatattactccagagacggcagactacaccaca
ccagagaacaccatgccggagggagggcccttaggagaaggcgggactctgctaggcact
aatgatcgctcgcttccacccagcgactcctcccagaccaccacagagggaccagactca
gctgtcaccccttcggatgtagcagaactggtgctggatggcagtgagagccagtactct
gggatgcagattggaaccctacaggatgaagaagatgaaggagcagcacctgccacccaa
gaagaacccccagagccattcctgcagtcagcactggctctgagcaagcctcatcttttc
gaaggccgaggtcacaaccggcagggttcagacagcagtgtggaccgcttcataccaaag
gacgaacctgctgaacccgaacctgacaacaagccatcacggataaagggtccaattgga
cattatacagaccagggggtggagccactggtgcactgtgtaaggcttcttgctgcttcc
ttcctgctgacaggacaaaagaatggtctgacccctgacaaggaggtgcgagtgagcgtc
aaggctctggccgtcagttgtgttggggcagcagcagcactgcatcctgaagccttcttt
aattccctctacctggagccgctggacggcattccagtagaagagcagcagtatatcagt
gacatgctaggcctcattgaccatggggacccccagatcaggggggccacagccatcctc
tgtgcagccatcatacaagcagcactcaccaaaacacgttacaacatacacacctggctg
gccagtgtgcagagtgcaacaggtaaccctctgtctctggtggacttggtgcctttgctc
cgaaaaactctgaaagatgaatcctccgttacctgcaagctggcttgctctgctgtgagg
cactgcatcatgactgtgtgcagcagtaccctgagtgaactcggcctgcagttggtgata
gacctgcttgctctgagggactcatcctattggcttgttcgtactgagctcttggagacc
ctggctgagatggacttccggttagttaatttcctggagaggaaaacggagactttacac
aaaggggatcatcactacactgggcggctgcggctgcaggaaagagtcctgaatgatgta
gtcatccgtctgttgggagatgacgaccccagagtccggcacgtggcagcctctgctgtc
agcaggctggttcccaggttgttctatgactgtgaccagggtcaagtggacccagtagtg
gctattgcccgggaccagtgttcagtctacctgcagctgctgatgcatgagacacaaccc
ccctcccagttcacagttagcacaatcacaaggacgtacagaggcttcaacttgtccaac
actgtgtctgatgtcacattggagaacaatctgtccagagtcgttactgctgtctcccat
gctttcacctcttctacctccagagccctaacttttggctgctgtgaggccttgtgcttc
ctggctttaagttttccagtatgcacttggagcacaggctggcactgcggctatgttagc
tccagtagcagcttttcttcccgctctagtctcaaccgcagcaggggcagggcccttagt
ttgtcacagcccagcggtgctccagcctcttcaaccacttcctcatctgcacccgacact
gagcggaggactctgacggtgggaatggccaacatggtcctctccttactctcctctgcc
tggtttccacttgatctctctgcacaccaggatgcacttttgctttctggcaatctgctt
gctgctgtggctcctaaatgcatgcacaaccccttggctggagaggaagaaggcagcaat
ggtagcacgaacaccagtggcccaaataagatggaggaaccttgggcagggctgtcggag
cgctacctggtagccatggtggagcagctcttctcccacctactgaaggtcctgaacatc
tgtgcccatgtgctggatgacacaccacctggaccagcagttaaggcaaccctcccctcc
ctgagcaacaccccttccctcagtcccatccgcagaaaaggcaaggagaaggaggctgcc
gagcccagtgctgcccctatgagcccaaagaaaagcaatgaggtcaacacaggcaggcca
gcagacagcacggggtcaacggccataaacaaatctaccacccttggcaacttctaccac
ctgccaccctacctcaaactctatgatgtcctcaaagctacacatgccaactacaaggtg
acactggacctccacagtagccaggagaagtttggaggtttcctgcgtgccacactagat
gttctgtctcagctattggagctggccacactacatgacatcagcaagtgtgtggaggaa
atcttgggctacctcaagtcctgcttctccagagaaccaaccatggctactgtttgtgta
caacagctgttgaagaccctgtttggcaccaacctggcctcccagtacgagggcgttctg
agtggacccagccgttcccagggcaaggctctccgccttggctcgtccagcctgcgacca
ggtctctaccattactgcttcatggcgccgtacactcacttcactcaggctcttgccgat
gctagtctccgtaacatggtgcaggctgaacaggagcaggacacttctggatggtttgat
gtaatgcaaaaagcttcgaaccagctgaggtccaacattgcaaatgcaacacgccacaga
ggagacaagaatgccatccacaaccacattcgtctgtttgagccactggtgatcaaagct
ttgaagcagtacactaccagcacttctgtggccctgcagagacaagtactggacctgctc
gcccaacttgtgcaactcagagtcaactactgcctgctggactcagatcaggtgttcata
ggctttgtcctgaagcagtttgagtacattgaagtgggacagttcagagattcggaggcc
atcattcccaacatctttttcttcctggtgctgctgtcttatgagcgttaccactccaag
cagataatcagcatccccaagatcatccagctgtgtgatggcatcatggcgagcggcagg
aaagctgtgacacacgccatcccagccctgcagccaatagtccacgacctgtttgtgttg
aggggctcaaacaaagcagatgcaggcaaagagctggatacacagaaagaagtggtggtc
tccatgctgctcagacttgtgcaataccatcaggtgttggagatgtttatccttgtactg
cagcagtgtcacaaagagaatgaggacaagtggaagagattgtccagacagattgctgac
atcatacttcccatgattgctaaacagcagatgcacctggactctccggaggcattggga
gtgttgaacactctatttgagactgtggcgccctcctctctcagacctgtagacatgctg
ctcaagagtatgttcaccaccccggccaccatggcatcagtagcgacagtccagctgtgg
gtgtctggtatcctggcggtgctcagggtactcgtctcccagtccacagaggacattgtc
ctgtcccgggtccatgaactctccctctccccgcatctcctctcctgccatgcaatccgc
cgcctccatcagcagagcccctccccaaatgacacactcggtaaccaggaacctaatggt
gaggcacaaaaagccctacctgaggaaacctttgccaggttcctgctccagctggtagga
gtgttgctggatgacatttcctccagacaggttaaagtggacattacagagcagcaacac
accttctactgccagcagctgggcacgctgctcatgtgtctcatacatgtcttcaaaagt
ggaatgtttcgcaggatcacagctgcagctagtcgtctcctgaagggtgagagtggaggt
ggactgcctagcaccgaggccgacctgttctaccccttagagggtctgaacagcatggtg
cagtgcctgatcaccacccacccctccctggtgctgctgtggtgccaggtccttctcatc
atcaactacaccaattactcctggtgggctgaggtgcaccaaacacccaagaggcaaagc
ctctcatgcacaaagctgctgagccctcactcctcaggggaaggagaagaggacaagcct
gagactcagttagccatggtcaacagagagattgtacgcaggggagccctcatcctattc
tgtgactatgtgtgtcagaacctccatgactcagagcatctgacctggctgattgtcaac
cacgtgcgtgacctcatcaacctttcccatgagcctccagtgcaggatttcatcagcgct
gtgcaccgtaactccgctgccagcggtctcttcatccaggccatccagtcgcgatgtgac
aacctcactactcctaccatgttgaagaagactctgcagtgtttggaaggcatccacctg
agtcagtctggctccctgctgatgctgtatgtggacaagctgctcagtacacccttcagg
gttcttgctcgcatggtggacacactggcgtgtcgcagagtggagatgctgctggctgag
acactacagaacagtatagctcagctgcctgtggaggaactggacaggatccaggaatac
ctccagaccagtggcctggctcagaggcatcagaggttctactccctgctggacaggttc
agagccactgttgctgacaccagcagcccaacacctcctgtgacatcacaccccttggat
ggggatccagctcctgcccctgaactggtcattgcagataaggagtggtacgtggctctg
gtgaagtctcagtgttgtcttcgtggagatgtttccctgctggagacaacagaactcctt
accaaactacctcccgctgacctctttaacatcatgagctgcaaggagttcaacctaagt
ctgctgtgtccgtgcctgagtatgggggtgcagcggttagcacggggtcaggggtcgctt
ttgttggagacgtccttgcaggtgaccctagagcagctcgcaggggtcaccgggtcactt
cctgtcccacaccagtccttcctgccaccctcccagccacagccctactggggtcaacta
gctgatgtgtatgatgagccaggtttctaccccagagttttgtcgctctgcagagctctg
tcccagtacctgctgagtgtgagccagctgccttcctcactacatatcccctctgacaag
gaacagctcatcaccactttcacctgcactgctgctgaggtggtagtgtggcgtctcctc
caggaccacttgcccctgagtgtggacctgcagtgggctctgtcctgcctgtgtctggcc
ctgcagcagccctgcgtctggaacaaactctccaccccagagtacaccacacagacctgc
tcccttatctactgcctacgcctcatcattgttgcagtggcggtgagtcctggcgaccag
cttctgcatccagagaagaaaaagacgaaggcagagagagacgctgaaggagaccaagtg
gactcggcacatgctgaccacatgtgcgagtggcaagcatgtgagatcatggcggagctg
gtggaaggcctgcagagcgtccttgccctgggtcaccacagaaacagtgcattccccgct
ttcctcacaccaaccttgcgcaacattgtcatcagtctgtcccgactgcctctggtcaac
agctacacccgagtacctccgctggtttggaaactgggctggtcccctcagccaggagga
gagtacggcacaacgctgcctgagatccctgtggacttcctgcaggaaaaggatgtcttc
agagagttcctctaccgaatcaacacactgggctggagcagtaggactcagtttgaggag
acctgggccactctgctgggggtgctggtcacccaacccatcgctatggaccatgaggag
gagacacagcaggaggaggacttggagcgtacccagttgaatgtgttagcagtgcaggcc
atcaccagcctggtgctgagtgccatgaccctgcccactgctggcaaccctgcagtcagc
tgtctggaacagcagccccgcaacaagagcctcaaagccctggaaacacgatttggaagg
aaacttgcagtgatcaggggtgaggtggagagagagattcaggctcttgtgtcgaagaga
gacaatgtccatacacaccacccgtaccatgcctgggaccctgtaccctcgctgtcagca
gcctcagctgcaggcacactgatcagccatgagaagctgctgcttcaaatcaacacagag
agggagatgggcaacatggactacaaactgggacaggtctccatccactcagtgtggcta
ggtaacaacatcaccccactgagagaggaagaatggggtgaggatgaagaagatgaagca
gacactccagcccccacctccccacccttatctcctatcaactccaggaagcatcgtgca
ggtgtggacattcattcatgttcccagtttctcctggagctctacagccagtggctgatc
cctggctccccaagtaacaggaggaccccgacaattctcatcagtgaagtggtccgatcg
ctgctggcggtgtcggacctgttcacagagaggaaccagtttgacatgatgttctcgact
ctgatggaactgcagaagctccacccgccagaggatgagatcctcaatcaatacctggtg
cctgccatctgcaaggctgctgctgtactgggcatggacaaagcaatagcggagcctgtg
tgtcgcctgttggagacgaccctgcgcagcacccacctgcccagccgcatgggggctctg
catggagtgctgtatgtgttggagtgtgacctgctggatgacacggccaaacagctcatc
cccactgtctctgagtacctgctgtccaacctcagggctatcgctcactgtgtgaacctg
cataaccagcagcatgtgttggtaatgtgcgcagtggccttctacatgatggagaactac
cctctggatgtaggagctgagtttatggctggagttatacagttgtgtggtgtgatggtg
tcggccaacgaggactccactccctccgtcatctatcactgtgtgctgcgtggtctggag
cgcctcctgctgtcagagcagttgtcacgcgtggacggagaagcgctggtgaaactcagc
gtggaccgagtcaacatgccgtcgccacacagagccatggctgccctgggcctcatgctc
acctgcatgtacactgcggtgcttgcgtcgggttcagacgtgacaggggttagaggtcag
gttgactctggctctgccgtagcagaggcggtgggcgtcacggcgggtcatgttggtttc
tcctcaggcaaggagaaagccagccctgccagtcgccccgcccattctgaccctcaggcc
ccagacagcgagtcgatcatagttgccatggagagggtctctgtgctcttcgacaggatc
cggaaaggtttacctagcgaggctcgggtggtgtccaggattctgccccagtttctggac
gacttcttcccgccacaggacatcatgaacaaggttatcggagagttcctgtccaatcag
caaccttacccacaattcatggccactgtcgtctacaaggttttccagacactccatgcc
acaggccagtcttctatggtgcgagactgggtgctgctgtccttatccaacttcactcag
aggacaccggtggccatggccatgtggagcctctcctgtttctttgtctctgcttccacc
tcccagtggatctcagccctactgccacacgtgatcagcagaatgggctccagtgaggtg
gtggacgtcaacctgttctgcctggtggccgtggatttctaccggcaccagattgatgag
gagctggaccgcagggctttccagtctgtctttgagactgtggcctcgccaggcagtcct
tattaccagctgctgggctgtctgcagtcaatccaccaggatacatcactctga
DBGET
integrated database retrieval system
