Siniperca chuatsi (mandarin fish): 122873869
Help
Entry
122873869 CDS
T08948
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03030
DNA replication
schu03410
Base excision repair
schu03420
Nucleotide excision repair
schu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122873869 (rfc1)
03410 Base excision repair
122873869 (rfc1)
03420 Nucleotide excision repair
122873869 (rfc1)
03430 Mismatch repair
122873869 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schu03032
]
122873869 (rfc1)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122873869 (rfc1)
DNA replication proteins [BR:
schu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122873869 (rfc1)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122873869 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_17
AAA_5
RuvB_N
Rad17
AAA_14
AAA_33
AAA_7
AAA_18
BRCT_2
AAA_16
nSTAND3
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
122873869
NCBI-ProteinID:
XP_044047083
LinkDB
All DBs
Position
LG3:16061933..16075098
Genome browser
AA seq
1164 aa
AA seq
DB search
MDIRRFFAPTSAKPAVQKPAPNGNVKTEEKKKTKKKNPLSPDEEVKKKETAKVKSSKPEE
KRKDSEKKRKKHAVIESDLEDEEQVRESKKSPREKQKTSKTEPPPKKDPVHYVSETDSDS
DNFQSLKVASKTKQNGTAKPTKSDATSARPEAKEGVTSPSSTQRKTAVKSPPVPITPKSA
LPPQPKKTPTSVLDYFGNSTIQRSDKKLVASTKRKAPTQDTDDLISDEQIARELHMEEEM
ELEKQVHEDEEFARTLAMLDDEPQAKKARKGSDEKPTPTAFSRKSSRDSAADSPSKTSRR
GSMSEDVISPSPKKNPAAIKASSKLAMMKKKNEERDEGPKSKTPISPTKMKISDKKFTPK
TGTTPTTVKTSPKKPEVSQSTSTSPDDAEKKKVNSSAYRNYLNRDGPRALGSKEIPQGAE
NCLEGCVFVLTGVLESMERDDAKSLIERYGGKVTGNVSKKTTYLVQGRDSGVSKFEKAES
LGTKILDEDGLLELIRTKPGKKSKYEIAAEAESKASKTRTPPSKASKSTPKAQKISPSKG
NSRSPHTPSPSKTGRTRDGGTPSRRGSGHTARRELGISSSISSSSAPRPSSPSPADEGAS
LLWVDKYRPRSLKTVIGQQGDQSCANKLLHWLQNWHRHHSGGASKPPAARFGKFGGGKDD
GSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNNTSIE
NFYKGTSQTVTSKHVLIMDEVDGMAGNEDRGGIQEMIGLIRNSKIPIICMCNDRNHQKIR
SLANYCFDLRFQRPRLEQIKGAMMSIAFKEGIKIPAPALNEMILASNQDVRQVIHNLSMW
SAKDKVMTYDQCKSDAARARKDMKMGPFDVCRKVFASGEETSHMSLIDKSDLFFHDYSLA
PLFVQENYLHVRPKAAGGDLKSHLVLLSKTADSISDGDLVDRRIRSGQNWSLLPTQAIYA
SVLPGELMRGYMSQFPTFPSWLGKNSSTSKHSRIIQELASHMGLKTLSSRQAVNLDYLHY
LRQALLSPLQRHGAEGAGEAVQLLDNYQLIKEDVDSIMEISIWGGQPDPYSKLDSKVKAA
FTRAYNKEVHLTPYSLQAVKKGRRGGGGDSELGGEDVDNEVQESEDEGEGLKTDAMIKQK
KAKATKESKKEDSGKGKGKGKAKK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacttcagccaagcctgcggtgcagaaaccagca
ccaaatggaaacgtcaaaacagaggagaagaagaagacgaagaagaagaatcctctctct
cctgacgaggaagtgaaaaagaaagagaccgccaaggtcaaaagctccaaaccagaggag
aaacgcaaagatagtgagaagaaacgaaagaagcatgcagtcatagaatcagacttggag
gatgaggaacaagtgagggagtcaaagaaatcccccagagagaaacagaagacaagcaag
acggagccacctcccaaaaaagatcctgtgcattatgtctctgaaacagactcagacagc
gacaactttcagtccttaaaggtggcctcaaaaaccaagcagaatggcacagccaagccg
acaaagtcagatgcaacgagtgctcgtccagaagccaaagagggggtgacgtctccctcc
tccacacagaggaaaactgcggtgaagtctcctcctgtgcccatcacccctaagtcagcc
ctgcctcctcagcccaagaaaacccccacatcagtactcgactacttcggcaattcgact
attcagcgctcagataagaagcttgtagccagcaccaaacgaaaggctccgactcaggac
acagatgatctgattagtgatgagcaaatcgccagagagctgcatatggaagaggaaatg
gagctggaaaagcaggtccatgaggacgaggaatttgccagaacactggccatgctagac
gacgagcctcaagcgaagaaggctcgtaaaggctctgatgaaaaaccaacccctactgca
ttttccagaaagagcagtagagactctgctgctgacagcccgtcaaagaccagtcgaagg
ggcagcatgtcggaggatgtgattagtccgtctcctaaaaagaaccctgccgccatcaaa
gccagctccaaactggccatgatgaagaaaaagaatgaagagagagacgaagggccaaag
agcaaaacaccaatttcgcccacaaaaatgaaaatctcagacaagaagttcacacccaaa
acaggaaccacacccaccacagttaaaacttctcccaagaaaccagaggtgagccagagc
acaagtacgagtcctgatgacgcagagaagaaaaaggtcaactcttcagcttacaggaac
tacctcaacagagatggaccacgagctctgggctccaaggaaatcccacagggtgcagag
aactgtttggagggctgcgtgtttgtgctgacaggcgtcctggagtccatggagagggat
gatgccaaatccctcatcgagcgctacggaggcaaggtgactggaaatgtaagcaagaag
accacctacctggtgcagggcagagacagcggagtctcgaagttcgagaaggcagagagt
ttgggtaccaagatcctggatgaagatggtctgttggagctgattagaaccaaaccagga
aagaagtccaagtacgagatcgctgcagaggctgagagcaaagcctcaaagaccagaacc
ccccccagcaaggcatcaaagagcacccccaaagcccagaagatctctccctccaagggt
aattccaggtcccctcacaccccgagcccgtcaaagaccggcaggaccagagatggcggc
actccatctaggagagggtcaggtcacacagcccggagggagctgggcatttcctcctcc
atttcttcatcttcagccccgagaccgtcatccccatccccggccgacgagggtgccagt
ctgctgtgggtggacaagtaccgaccacgctctctgaagactgtgattggccagcaggga
gaccagagctgtgccaataagttgctacactggctgcagaactggcacaggcaccacagc
gggggcgcttccaagccaccagcagcaaggttcggtaagtttggaggagggaaagatgat
ggatcaggatacaaagctgctctgctctctggacctccgggagtggggaagaccaccaca
gctgccctggtctgtgaggagttgggcttcagctacgtggagatgaacgccagctgtact
cgcagcaaaaacagcctgaaggaggtcgttgcagagtcactgaacaacaccagcatcgag
aacttctacaaaggcacgtctcagacggtgaccagtaaacacgtcctgatcatggatgag
gttgatggtatggctggcaacgaggaccgcggaggaatccaggagatgattggcctgatc
agaaattcaaagattcccatcatttgcatgtgcaacgatcgtaaccaccagaagatcagg
tctctggccaattactgcttcgatttgcgcttccagaggccgcgactggaacagatcaag
ggagccatgatgtccatcgctttcaaggagggaatcaagatcccagccccagctcttaat
gaaatgatcctagcctccaatcaggatgtccgacaggtgatccacaacctgagcatgtgg
tcggccaaagacaaggtgatgacgtatgaccagtgcaagtctgatgcagccagagcccgc
aaggacatgaaaatggggccgtttgatgtttgtcggaaggtgtttgcctcaggagaggag
acttcccacatgagcctcattgacaagtctgacctcttcttccacgactactcgctagcg
ccgctctttgtccaagagaactacctgcatgttcgtccaaaggccgccggtggtgatctg
aagtcccacctggtgttgctcagcaagacggctgactccatctctgacggggacttggtg
gacagacggatccgctctgggcagaactggtcactgctgcccacccaggccatctatgcc
agcgtgttaccaggcgagctcatgagaggctacatgagtcagttccccacctttcccagc
tggctcggcaagaactcctccaccagtaaacattcccgcatcatccaggagctggcctca
cacatgggtttaaagacgttgagcagcaggcaggcggttaacctagactacctacactac
ctgcggcaggcgctgctgagcccacttcagaggcacggagcggagggcgctggcgaggca
gtgcagctgctggacaactaccagctcatcaaggaggacgtggacagcatcatggagatc
agcatctggggtggacaacccgacccctactccaaactggactctaaggtgaaggcagca
ttcacacgggcctacaacaaagaagttcacctgacgccgtactccctgcaagcagtgaag
aagggccgccgtggcggcgggggggattcagagttgggaggagaagacgtggacaacgaa
gtgcaggagtctgaggacgagggggaaggcctcaaaactgacgccatgatcaaacagaag
aaggccaaagccacgaaggagtcaaagaaggaagattctgggaagggcaaggggaaaggc
aaggccaagaaatga
DBGET
integrated database retrieval system
