Siniperca chuatsi (mandarin fish): 122874017
Help
Entry
122874017 CDS
T08948
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
schu03009
]
122874017 (pdcd11)
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
90S particles
Other 90S particles
122874017 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
Suf
TPR_14
OB_RRP5_4th
TPR_19
HAT_Syf1_CNRKL1_C
OB_RRP5
UTP6_C
TPR_16
TPR_CcmH_CycH
ARM_TT21_5th
ARM_TT21
PCB_OB
DUF2110
PPR
TPR_15
NRDE-2
Motif
Other DBs
NCBI-GeneID:
122874017
NCBI-ProteinID:
XP_044047425
LinkDB
All DBs
Position
LG3:24822272..24836788
Genome browser
AA seq
1813 aa
AA seq
DB search
MASVEEDFPRGGTAKKPTESKIVVQRTEVDNLFQSNEQAETKKRKGAVKEDGKKLKKQKT
GKEKEDGLTLNAAAKCVEILHIKNVKEGMLMLGCVKEVTDFEVTVSLPCGLQGFLSIKNI
CDSYTKLLSEQLDSADTEEICSLPHLFHSGMVFRCVVAKLDVAKGGSLSIQLSIDPKLVN
KALTSSSVKAGMVLSGCVESVEDHGYIVDIGINGTKAFLPKKVANDKHNNPEELKVGQYV
TSQVEEVKNNGRMVRLSVSPPAVSQACAETEQGWNLTNLLPGLLVKATIKKVTKHGLILD
FLSSFSGQVDFLHMEPEQASSYTEGTKVRACVLYVEPSTRLVALSLRSYLVQPGTRVDPS
PAGGDRIGEVVKDCKITTMHHMSGAMLELPDKTLAFVHRNHLKESNEPANENRVLAMSEH
TCRILDFSLMDQIHFVSLRKSVIERLFYRYHDLQAGQVVEGRVSVLLNHGMIVHLSDHIK
GLVPRTHLSDIILKNPEKKYMEGMKVKCRVLSVDAENKKLYLTRKKAMIESSLPLFLSYS
DARPGRVSHGYIVCIKEFGCIVRFYNSIKGLVPLNELSSEPIISPEDLFYVGQVLKAKVL
QCDPDKAKMVLSFKAAVEGDTEEAAKPQFDCEVGKRLEAKVLKKSVNGLEVAILPDEIRA
VLPTMHLSDHISNCPLLWENLQEGDNVSNLICFNKNKQNITLTKKPTVRWSLEEGVVAKD
FSEITVGMQLIGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFISDATTAFQLGQTVFAK
VTNLDEEKRRFLVTLKISEVISPEGDAQTRLINGLQERRAVTEMLAMRDDSDLRQQLAAL
SVGQKLKLTVDTAKDSGATFKSDDLGSATILATKYHVMGVNLTPGQKVTAVILHVDILSA
CVHVSILSKLVGKKKSLTEGSKYTAMVQHIDKDFAIISLDDTAQLTVIQTSNHLNEMFLS
ESEKLKAGMSLTVEVIEPSCQELQGLPLVSWVRSAPKRQRTTSENQTGSKGHRYGEIVQA
KVRTVKPTSIQVTLEDGSTGSVHVSEVVEVSEVCRGSFPTSSIKVGSVVTARVIGGREAS
SHRFLPFSHPKFTYTIPELTLIPSKLDESADFKPVTAKEKLNSYKLGEEITCFVSKFNPE
RKSLEVTTDPCVTGTVELLAMITDPKDASHPEKLYKLGQAVHAKVVEVNSKPQRFVLSLT
GVHKLEKGSVTLGMVTNIQPQVGLLVKLPFGGMGTVAVTELADAYRPNPLDGYSKDQLLR
CFLLGNENGKWQLSLRPTRLNPQQAKPVKDPEVLSVDKLKAGQIIRGYVKSVGEQGVFIR
LSKSITGRAELQQSTKYFVNNHKVLSEHLPVNTLLTTKILSIDKEQVLVNLSLLPLDTGK
PDILPESLGLPLRLIGEEKKKHDTEKKKRTLSESKEKQAESQVPKKKSKKAKTDDNDSGV
EVYFREEEDKEDEEPKCDSIKQVPHSSVGPPRLQVAAGFSWDVGLSSLKPASAAPEGDFS
DGEDQDGSSKPQKKSRHELEQEKKAAEKALVQREAELMDPSLRPQDAAAFERLLLASPNS
SLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTADSLK
KVFERALQFCEPMPVYQQLADIYAKSDKTKEAEGLYKTMVKRFRQNKAVWLSYGTFLLQQ
GQSDAASALLQRALKSLPSKESVDVIGKFAQLEFRYGDAEKGRTMFDKVLTSYPKRTDLW
SVFIDLMVKHGSQKEVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQSVKEKA
MEFVEAKGTEAAN
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgtggaggaggacttccctcgaggagggacggcaaagaagcccactgagagt
aaaatagtggtgcagcggacagaagtggacaacttgttccagtcaaatgaacaagcagaa
acaaagaaaagaaagggggcggtcaaagaggacggcaagaagctcaagaagcaaaagacg
ggcaaagaaaaagaagatggtctgacgctgaatgcagcagccaagtgtgtggaaattcta
catatcaagaatgtgaaggagggtatgctgatgctgggctgtgtgaaggaggtaacagac
tttgaggtgacagtcagcctgccttgtggcctgcaaggattcctcagcatcaagaacatc
tgtgactcgtacaccaagctactcagcgagcaactggattcagctgatacagaggagatc
tgctctctgccacacctcttccactctggcatggtgttcaggtgtgtggttgccaagttg
gatgtggccaaaggaggttctcttagcatccagctgtcaatcgatccaaagctcgtcaac
aaggctctcacctcaagctctgtgaaagctggcatggtcttgagtggatgtgtggagagt
gtggaggatcatggctacatagttgacattggcatcaatggaaccaaagctttcctgccc
aagaaagtagcaaatgacaaacacaacaacccagaagagctgaaagtgggtcagtatgtg
acttctcaagtggaagaagtaaagaacaatgggcgtatggtccgcctttctgtcagcccc
ccggccgtctcccaggcctgtgctgaaaccgagcagggctggaacctcactaaccttctg
cctggtcttctggtcaaagctacgatcaaaaaggtgaccaaacatggtctgatcctggac
ttcctgtcctcctttagtggccaggtggactttctccacatggagccagagcaggcatcc
agctacacagagggaaccaaggtgcgagcctgtgtgctgtatgtggagccgtccacccgt
ctggtggccctgagcctgcgcagctaccttgttcagcccgggaccagagttgacccctct
cctgctggaggtgaccgcattggtgaagtggtgaaggactgcaagatcaccactatgcac
cacatgtctggagccatgttggaactgccagacaaaacgttggcttttgtacataggaac
cacctgaaggagtctaatgagccagctaatgaaaacagagtgctggccatgtctgagcac
acctgcaggatcttggacttcagcctcatggaccaaattcattttgttagtctgcgcaag
agtgtgattgagaggcttttttatagataccatgatcttcaagctggtcaggttgtggag
gggagagtgtcggtcctgctgaatcatggcatgatagtgcatctgtctgaccacattaaa
ggcctggtgccccggacccacctgtctgatatcatccttaagaacccagagaagaagtac
atggagggcatgaaggtcaaatgtcgggtgctgtcagtcgatgcagagaataagaagctg
tacctgaccagaaagaaggccatgattgaaagctccctgccattgttcctcagctattct
gatgcccgtcctggccgcgtgtcccatggctacatcgtctgcatcaaagagtttggctgc
attgttcgcttctacaacagcatcaagggtctggtgcccctcaacgagctcagctcagag
cccatcatcagtcctgaggacctcttctatgtggggcaggtattaaaggctaaagttctt
cagtgtgaccccgataaggcgaagatggtgctgtcatttaaggccgcggtggagggagac
actgaggaagcggccaagccccagtttgactgtgaggtggggaagaggctggaggccaag
gttctgaaaaagtcagtcaacggtctggaggtggccattctccctgatgagatccgtgct
gtactacccacaatgcacctttctgatcacatatccaactgccctctgctgtgggaaaac
ctgcaggagggagacaacgtctcaaaccttatctgcttcaacaagaacaaacagaatatt
accctcaccaagaaaccaacagtgagatggtcactggaggaaggagtggttgccaaggat
ttctctgaaatcacagttggaatgcagctgattggctggatcaagaacatcatgtcctat
ggcgtctttgtagaattcccatatggccttgttggtcttgcacccaaatcagccatgacc
gacaagttcatcagtgatgcgacaactgccttccagctgggccagacagtgtttgctaaa
gtgaccaacctggatgaggaaaaacggcgtttcctggtcacgctgaagatttcagaggtc
atatctccagagggtgatgcccagaccagactcattaatggcctgcaggagagacgagct
gtgactgaaatgttagctatgagagatgacagtgatcttcgacagcagctggctgctctg
tctgttggtcagaagcttaagctgactgtagatactgcgaaggacagtggtgccaccttt
aagtcggatgatttgggcagcgctaccatactggccaccaagtaccatgtcatgggtgtt
aacttgaccccaggacagaaagttactgcggtcatcctccatgttgacatcctctccgca
tgtgtccatgtgtccatcctttccaagctggtggggaagaagaaatctttaactgaagga
tcaaagtacacagcgatggtgcagcacatcgacaaagactttgctatcatctcactggat
gatacggcgcagctgactgtgatccaaactagcaaccacctgaatgagatgtttctgtcg
gagtcagagaagctgaaggcggggatgagtttgactgtcgaggtcatagaacccagctgt
caggaattgcaggggctccctctggtgtcgtgggtgcgcagtgcaccaaaacgacagcgc
acaacctcagaaaaccagacaggctctaagggtcaccgctatggtgaaattgtgcaggct
aaagtgcggacagtgaagcctacctccattcaggtcacactagaggatggaagcacaggc
agcgtgcacgtgtctgaagtggtggaggtttcagaagtgtgtcggggatccttccccaca
tcctcgattaaagtgggcagtgtggtcactgccagggtcatcggaggacgagaagcctcc
agtcacagattcttgcctttctcccatcccaaattcacatacaccattcctgagctcaca
cttatacccagcaaactggatgagagtgcagatttcaaaccagttacagcaaaagaaaaa
ctaaacagctacaagctcggggaagaaattacttgctttgtatcaaagtttaatccagaa
aggaagtctttggaggtcaccactgatccttgtgttactgggacagttgaactgctagcc
atgatcactgatccaaaagatgccagccacccggagaaactatacaagctgggccaagca
gtccatgccaaagtggtagaagtgaactccaaacctcagcgctttgtgctgtcactcaca
ggtgtccacaaactggagaaaggcagtgttactttgggaatggtgactaatattcagcca
caagtcggtctcctggtcaaacttccctttggcggcatggggactgttgctgtcactgag
ttggctgatgcctacaggccaaaccccttggacgggtacagcaaggatcagctgctccgt
tgtttccttcttgggaatgaaaacggcaagtggcagttgtctctacgcccaacgaggctg
aacccgcagcaggccaagccagtgaaggacccggaagttttgtctgtagacaaactgaag
gcaggccagatcatcagaggctacgtcaagtctgtgggagagcagggggtcttcatcagg
ttgtcaaagagtatcacgggaagagccgaacttcagcagtccactaaatactttgtcaac
aaccacaaggtcctctctgagcaccttcccgtcaacaccctcctcactaccaagatcctc
agtattgacaaagagcaggtgttggtcaacctctctctgctcccattggacaccgggaag
ccagacatccttccagaatctctcggtctgccactgcgtctgatcggagaggagaagaag
aaacatgatacagagaagaagaaacgcacactgtctgagagcaaagagaaacaagcagag
tcccaggtcccgaagaagaaatcaaagaaagcaaagactgatgacaacgacagcggagta
gaggtatacttcagagaagaggaggataaagaagacgaagaacccaaatgtgattccata
aaacaggtgccgcacagctcagtgggtccacccagactgcaggtggcagcaggtttctcc
tgggacgtgggactgagctccctgaagcctgcctctgcagcgccggagggggacttcagt
gatggagaggaccaagacggaagcagcaagccccagaagaagtctcgtcatgagcttgag
caagagaaaaaggcagcagagaaggccctggtacagcgggaggctgagctgatggatccg
agcctgcggccccaggatgctgctgccttcgagcgcctgctcctcgcctcacccaacagc
tccctgctttggctccagtacatggctcaccatttgcaggccacccagatcgagcaggcc
cgcgctgtggccgagagggccctcaaaaccatctctttcagggaagagcaggagaagctg
aatgtgtgggtggccctgctgaacctggagaacatgtatggcacagcggacagcctgaag
aaagtgtttgagcgggcgctgcagttctgtgaacccatgcccgtgtaccagcagctggcg
gacatctacgcaaagtccgacaagaccaaggaggcggagggcctgtataagacgatggtg
aagcgtttccgtcagaataaggcagtgtggctgagctacgggaccttcctgctccagcag
ggtcagagtgatgctgccagtgcgcttctgcagagggcgctgaagagtctgccctccaaa
gaaagtgtggatgtgatcggcaagttcgcacagctggagttccgctatggtgatgcagag
aaaggtcgcaccatgtttgacaaagtcctgacgagctacccgaaacgtacagacctctgg
tctgtcttcatcgacctcatggttaaacatggctcacaaaaggaagttagggcgctcttt
gaccgtgtgatccacctgagcgtttcagtgaaaaagatcaagttcttcttcaagcgctac
ttggagtacgagaagaagcatggcaccccgcagagcatccagtcagtcaaagagaaggcc
atggagtttgtggaagctaaaggcacagaggctgccaactaa
DBGET
integrated database retrieval system
