KEGG   Siniperca chuatsi (mandarin fish): 122874018
Entry
122874018         CDS       T08948                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:schu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    122874018 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:schu03021]
    122874018 (taf5)
   03036 Chromosome and associated proteins [BR:schu03036]
    122874018 (taf5)
Transcription machinery [BR:schu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     122874018 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     122874018 (taf5)
Chromosome and associated proteins [BR:schu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     122874018 (taf5)
    STAGA complex
     122874018 (taf5)
    TFTC complex
     122874018 (taf5)
    SAGA complex
     122874018 (taf5)
    SLIK complex
     122874018 (taf5)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_2nd TFIID_NTD2 WD40_WDHD1_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_VPS8 WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR75_1st DSE1_N Beta-prop_Aladin Beta-prop_SCAP PAC11 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st CFAP251_N Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_SPT8 ASA1 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_NOL10_N Tricorn_2nd Beta-prop_Nup120_160 PEP5_VPS11_N WD_LRWD1 LisH_PAC1 eIF2A PROPPIN Beta-prop_ACSF4 Beta-prop_WDR11_2nd LisH_TPL
Other DBs
NCBI-GeneID: 122874018
NCBI-ProteinID: XP_044047430
LinkDB
Position
LG3:24814952..24820543
AA seq 749 aa
MAAVQGGLVDTDEEKDIKTEPSNDGCGNNNANDGRVLSTSPGSSASAGSNKTPAGAPEDQ
QTLLAVLQFLRKNKLTESVEILRREAGLPEDSLDLKGGDSSGAGSGGAAGSVATEGGDVS
SLLSRVTVSSSAAAQAPTKAPGEDQPDVNVVLSAYSQQGDPALYGVYYSGLKRFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHENEAKVFFEKFSGDQECYYEEDLRILSSLTKKEH
MRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSI
GSKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYLKESTKRIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPHGYYFLSGGHDRVARLWATDHYQPLRMFSGHLADVTCTRFHPNSNYVVTGSSDRT
IRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMIGELKGH
TDTIYSLKFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFTAATGHIHLQDNSQELLL
GTYMSKSTPVVHLHFTRRNLLLAAGAYNP
NT seq 2250 nt   +upstreamnt  +downstreamnt
atggcggccgtacaaggtggtctggtcgacacggatgaagaaaaagacattaaaacagaa
ccatcaaacgatggctgtggaaataataatgcaaacgacggcagagtgctctctacgtcc
cccggctccagtgcttctgctggaagtaataaaactccggcgggagccccggaggaccag
cagacgctgctggcagtcctgcaattcctcagaaaaaacaaattgaccgagtccgtcgaa
attttgcgtcgtgaagcggggttaccggaggattcactggatctgaaaggaggtgattcc
tccggggcaggctcgggaggtgctgccggcagtgtggccacagaaggcggggatgtgagc
tctcttctcagccgggtgaccgtctcatcctccgctgcagcccaggcgccaaccaaagct
cctggggaggatcagccagacgtcaacgtggtgctgtcagcttacagccagcagggagac
ccggctctgtacggggtttactacagcggcctgaagaggttcatagaatcggttttggac
tgtcaccgagcagaactgtcccaagtcttctacccgctgtttgtccacatgtatctggag
ctggtgtacaacaatcacgaaaatgaggccaaggtgttctttgaaaagttcagcggggat
caagagtgctactacgaagaggacttgcgcattttgtccagcctgactaagaaggagcac
atgagaggcaatgagaccctgctggacttccgcaccagcaagtttgtgctgcgtatctcc
cgtgactcttaccaactgctgaagaggcacctgcaggagcgtcagaacaatcagatctgg
aatatcatccaagagcacctctacattgacatctttgatggcatgccacgcagcaagagc
cagattgatgccatgtctggcagcttggctggagaggccaagcgagaggccaataaggct
aaggtttactatggactgctgaaggaaccagaaattgagctgcctcttgatgatgaggat
gaggaggcagagaatgaggagggtaaacccaagaagaagaaacccaaaaaggacagcata
ggctctaagagcaagaagcaggatcctaacgcgccatcacagactaggatacctcttcca
gaactcaaggattcagacaagctggacaagatcatgtacttgaaggagtccaccaagagg
atccgcctgggaccagataacctcccctccatctgcttctactcttttctcaatgcctac
cagggtctgactgcagtggacttcacagatgactccagcctgattgcaggtggcttcgct
gactccacagtgcgggtgtggagcgtcacaccgaaaaagctccgcaaggtcaagtctgcg
gcagacttgaatctgattgacaaagagtcagatgatgtgctggagaggatcatggatgag
aagacggccagtgagtcaaagatcctctacggacacagtggcccggtgtatggcatcagc
ttcagcccagacagaaactacttgttgtcaagttctgaagatggtacagtcaggctgtgg
agtctccaaacatttacttgtctggtgggctacaaaggccacaactacccagtgtgggac
acccagttttccccccatgggtactattttctctccgggggacatgacagagttgcccgt
ctgtgggcaacagatcactaccagcctctgcggatgttctctggtcacctagctgatgtc
acttgcacccgcttccaccccaactccaattatgtcgtcacagggtcatctgatcgcaca
atccggctctgggatgtcctgaatggaaactgcgtccgaatcttcacaggtcacaagggt
cctatccacgcgctggctttctctcccaatggaaagttcttggcttcaggggccactgac
ggcagagttcttctgtgggacatcggtcacgggctgatgattggagaacttaaaggccac
acagataccatctactccctcaagttcagcagagacggcgagatccttgcctccggctcc
atggacaacacggtccgtctgtgggatgctatgaaagcatttgatgatttagagactgat
gattttacagcagctacaggacacatccatctacaagataactcccaggagcttctgctg
ggtacctacatgtctaaatccacacctgtagtacaccttcacttcacccgcaggaacctg
ctgctggctgctggggcctacaatccatga

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