Siniperca chuatsi (mandarin fish): 122874069
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Entry
122874069 CDS
T08948
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6-like isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122874069
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122874069
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
U-box type E3
122874069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-CCHC
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
122874069
NCBI-ProteinID:
XP_044047534
LinkDB
All DBs
Position
LG3:8740952..8759290
Genome browser
AA seq
1753 aa
AA seq
DB search
MSCVHYKFSSKLDYNTVTFDGLHITLSELKRQIMGRERLKATDCDLQITNAQTREEYTDD
EAHIPKHSSVIVRRTPIGGVKPAGRTFIVDRSDTAVVGSSRPTDSSPSLSLAQLAKTANL
VDANASEEDKIKAMMSQSNHEYDPIHYSKKAVGPPPAHYTCFRCGKAGHYIRQCPMLMVQ
DKSVEGPKQVRISKGIPQSFMVKAEPGTKGAMLTSTGEYAIPAIDAEAYAQGKKERPPFV
PHDQSSSEDDSDPIPDELLCPICNDLMTDAVVIPCCGNSYCDECIRTALLDSEEHICFTC
KQSDVSPDNLIANKFLRQAVNNFKNETGYTKHVRKQVQNAAPPPPRPHLVRPLHSRQQDP
LLANVTHPSSSTSIPSTAPQAQVPSPSPPVATAAPSPPPPHAAVEAQDSSPAPPPVVDHH
SPMHSTSQGEPPPPGETDPEPTVTPDSSGASDSASQSYHLTVVGHPPPTRPPYPSGHQSR
PHHSHRGGGRHWERPYRGRGEHPSSHLQTAPPLAPVPPVFPAPSLYPPPPQPYPPPYTSG
PGLIPPPAISYQPQPVYAPGPPVLNPPWVAPGTQPPLIPLPPSLSQPPLSKEDFYRQRHH
RQDKVPSKLDEFTKDFHKELMKYRNAPKRRRPSYSRSRSYSRSPFSRSYSRSRSRSRSRS
YSYSPSRSRSRSRSQGRSYPRSPYSRRNGRSYGRSRTRSRSRSRSYGYRRSGSPRSPPPY
RGGGWEGAEGAGPYRSRSRSRSPGGYRSRSPGGRKPPPRELPPYELKGPSPGGHERWERE
KYRQWEKEYADWYNRYYKDYDGQHPSLHHRGRGSRDRERDGRDRMSPLSRDYSPQGRGRR
GREERGAPPHHPPSSSSSGNKSSTKVLKTKKVKKKKSGEEPEPSHQSVDRGDATPVRDEP
MDEIPSLIKTPPISSKPSVGAATTKAPASKSTAAPVKPSTKSTSKTPSDKTKKDKGQKVK
AKVKTEVVKVKSDKVKKKTGEGVVTKKRDSSSSSSSVAKPLKTIKTKPEDAPNSTTPKKE
KGKSSAVRPALLKTPPLSSQNLPPHHPSLHDGPRPGHDIRGRRDLPQSGGLLPLPHQHGL
PLLHRPPSPVDSRRRMGEEGRSLLGPPPGKLRRIDGLGVGGEIISHSHMSHQPLLHRLPP
SSDRPGLLPLPGSREMGRGDSDRGSIRPLMEVQVKPLTQRRIKLNRDLGRKGSTETAASD
RALSDPEKSTSTSDRSAAANTSEGGRTSITAEGAGRKERSASAERGVSRERPGSAGERLQ
GSDREQNRSSGLDRERDRASGSDRDRGMVSDRERDRVSGSGSQKVAVTVERDAEGERSVR
TERKNSGGGSAGGRSVSLDKMTIGEKSSVTRRVADHQEKPSVSSKERREGSERVAKSDRS
VSKDRAERSVTSGEKPAASHREAVKDFEESVVKSKPRISRKALMSHTTRSTQETKQDSDK
DQKSASSKPVEQPPSSPVNSRGRSPSVSPTPSPAREEPLIQPPPRSKWEREDDEEGQENG
LIIPTEPSPVPQRGRGREVQTEAPKPVRSEGRDATREERRGVVREEKKVRASREEGKGSR
TAQTNSDKPKTKIVREEGRGVREEGRAVAREEGRGGGREEGRGATGKEERAAEGRGGGGR
EESRGPEPRRQRLCSDLGRETDEAAFVPDYSEGEGSEPERGRSGSPSLSLSQPSHSPTLS
NHSSLGTTTVDKKKKKHKKHKKHKKHKKHNSQDKEGEHKEHKHKHKKKKHKKNKDKDVEE
EEKMEKAEEGASC
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcactataagttttcttccaaactggactacaacacagtcactttcgat
gggctgcatatcacccttagtgagcttaaaaggcagattatgggccgagagcgcctcaag
gccacagactgcgacctacagatcaccaatgcgcaaactcgagaagaatacacagatgat
gaagcccacatcccgaaacactcatccgtgatcgtccgccgcactccgattggtggagta
aaacctgctggcaggacgttcattgtagatcgttctgacacagctgtggtgggatcttcg
agacccactgattcttctccttctttgtcactcgcccaactcgccaagactgctaacctg
gttgacgcaaatgcatcagaggaggacaagattaaagccatgatgtctcagtccaatcat
gaatatgacccaatacattactccaagaaggcagttggacctccacctgctcactatacc
tgctttcgttgtggaaaggctggtcactacattcggcaatgccccatgcttatggtccag
gataagagtgtggagggtcccaagcaagtaaggattagtaagggcattcctcagagcttc
atggtgaaagcagagccaggcaccaagggagccatgttaaccagcactggagaatatgct
atacctgctatagatgcggaggcctatgcgcaaggaaagaaggagcgccctccatttgtt
ccacatgaccagtcatcatctgaggacgattcagacccaattccagatgaactcttgtgt
ccgatctgcaatgacctgatgaccgatgccgtagttataccctgctgtggaaacagttac
tgcgatgagtgtatcagaactgccttgttggactcagaggagcacatctgcttcacatgc
aaacagtcggatgtttcacctgataatcttattgccaataagtttcttcgacaggctgtg
aacaactttaagaatgagacaggatacaccaaacatgtgcgcaagcaggtccaaaatgca
gccccgcctccaccgcggcctcatttggtccggcctctgcactcgagacagcaggacccg
ctgctggccaatgtcactcacccttcttcttctacaagcataccctccactgcccctcaa
gcacaagtcccgtccccttcacctcctgttgctactgctgctccttctcctcctcctcct
catgctgctgttgaagcacaagattcttcaccagcccctccacctgtcgttgaccaccat
tcacctatgcactccaccagccagggggaaccacccccaccaggtgagacagacccagaa
cctactgtgacaccagactcatcaggagcctcagatagtgcatcacagagctaccattta
actgttgttggccacccgccacctacaaggccgccttatccatcaggtcaccagtcacgg
ccccaccactctcacagagggggaggtagacactgggagaggccttacagaggtagagga
gagcatccctcctctcatctccagacagctccacctcttgcacctgttcctccagtgttc
ccagctccgtccctgtacccacccccaccacagccctacccccctccgtacacctctggc
cctggccttatccctcctcctgccattagttaccagccccagcctgtttatgcccctggt
ccaccagtgctcaaccctccttgggttgcccctggtacccagccccctcttattcctctt
ccaccctccctctctcagccccccctctctaaggaagatttctacagacagcggcaccac
cgacaggacaaagttccatccaaactggatgaatttactaaagacttccacaaagagctt
atgaagtacagaaatgcaccaaagagacgacgaccatcttattccaggtcccggtcatac
agtcgctctccattcagccgttcttactctcgctctagatccagatcaagatccaggtct
tactcttattcccccagtcgatcccgctcccgttcacgctcccaaggccggtcttatccc
cgctccccctattctagacgtaatgggcgcagttatggacgctcacggacaaggtcccgc
tctcgttcaaggtcttacggatatcggcggtcaggctcaccacgatctcctcccccctac
cggggaggaggctgggagggagcagaaggagcaggaccctacaggtctaggtcgcggtct
cgctccccaggtggctaccggagccgcagccctggtggacgaaagccacctcctcgggag
ctacccccttatgaactgaagggtccaagtcccggaggccatgagcgctgggaaagagaa
aagtatcgccagtgggagaaggagtacgcagactggtacaacaggtactacaaagactat
gacggccaacatccctctctgcatcacagaggtcgtggcagcagagacagggagagggac
ggaagggacagaatgtccccattatctagagattactccccccaggggagaggaagaaga
gggagagaagagagaggtgctccacctcaccatcctccatcctcttcctcatcagggaac
aagtccagcactaaagtcctgaagacaaagaaagtaaaaaagaagaaatccggtgaggaa
ccagagccatcacaccagtcagtggacagaggtgatgctactcctgtcagggacgaacca
atggatgaaatcccttcactcattaaaacgcctcccatctcctcaaagccttcagttggt
gccgcaaccactaaagctccagcctctaaaagcactgctgcacctgttaaaccatcaacc
aagtcaacatcaaagactccgtctgataagactaagaaagacaagggtcaaaaggtaaaa
gctaaagttaagacagaggttgtaaaggtaaagagtgacaaggtgaagaaaaagactgga
gaaggagtggtgaccaaaaaaagagactcctcatcctcctcctcctctgttgctaaaccg
ttaaagaccattaaaaccaagccagaagatgcccccaactcaactacccctaaaaaagaa
aagggtaaaagctctgcagtgaggcctgccctgcttaagactcctccactgtcctcccag
aacttgcctccacatcatccctctcttcatgatggccctcgacctggccacgacatccgg
gggagaagagatcttccacagagtggtggtctccttcccctcccgcatcaacacggactc
ccactcctccaccgacctccctccccagtggacagtcggagaaggatgggagaggagggc
cgctctttactcggacctcctcctggaaagctgaggagaatagatgggctaggggttggc
ggtgaaatcatctcccactcgcacatgtctcatcagcccctgctccacagactcccaccc
tcctcagacaggcctggtcttcttccccttccaggaagccgtgaaatgggccggggagac
tcagatcgaggatccatcagacctctaatggaagttcaggtgaagccactgacccagagg
aggatcaagttgaacagagatctggggagaaaaggcagcactgagacagcagcctcagac
agagcgctgtcagatcctgagaagtcgacctccacctcagaccgatcagctgctgctaac
acctctgaaggtggccgaaccagcattacagcagaaggtgcaggaagaaaggagcggtca
gcatctgctgagaggggggtctccagagagagacctggaagtgctggagagaggctgcag
ggctcagacagagagcagaacagaagctcgggactggacagagagcgagacagagcttca
ggatcagacagagacagaggcatggtgtctgacagagagagggacagggtatcggggtca
ggctcacagaaggtagcagttacagtggagagagatgccgaaggagaaaggtcggtgagg
acagaacgaaagaactccggtggtggaagtgcaggaggaaggtctgtctctctggataaa
atgacgatcggagagaaatcatccgtcaccaggagagtggcagaccatcaggagaaacca
agtgtatcctctaaggagagaagggaggggtcagaaagagtggctaaatctgacaggagt
gtgtccaaggacagagcagagaggagtgtcacctcaggagagaaaccagctgcttctcac
agagaagcagtaaaagattttgaggagtctgttgtgaagagcaaacccaggatcagccga
aaagccctgatgagccacaccactaggtcaactcaagaaacaaagcaggactcagacaaa
gaccagaagagtgcatcctccaaacctgtagagcagcccccatctagccctgtgaacagc
cgtggccgcagcccaagtgtcagcccaacacccagtccagccagggaggagccgctcatt
cagcctcctcctcgctccaagtgggagagagaagatgatgaagaaggccaggaaaacgga
cttattatacccacagagccctcacctgtgccgcagaggggccgaggcagagaggtgcag
actgaagcgcctaaacctgtcaggagtgaaggacgggatgccacaagggaggagagaaga
ggcgtagtgagagaagagaagaaagtgagagcatcgagggaagagggtaaaggtagcagg
acggcacagacaaattctgacaaaccaaaaacaaaaattgtgagggaggaggggagagga
gtaagagaagaagggagagctgtggcaagagaggaggggagaggaggaggaagagaggag
gggcgaggagcgacagggaaggaggagagagcagctgaaggcagaggtggaggaggacga
gaggagagccgtggcccagagcccaggagacagcgcttgtgttctgacctgggtcgtgag
acagacgaggcggcctttgtgcctgactacagcgaaggcgaaggctctgagccagagaga
ggcaggagtggcagccccagtctgtccctcagccaaccctcccacagccccaccctgagc
aaccacagcagcttgggaaccaccaccgtggacaagaagaagaaaaaacacaagaaacat
aaaaaacacaaaaagcacaagaagcacaacagccaggacaaagaaggagaacacaaggag
cacaagcacaaacacaagaaaaagaaacacaaaaagaacaaagacaaagatgtggaggaa
gaggagaagatggagaaagcagaggaaggggcttcatgctaa
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integrated database retrieval system
