Siniperca chuatsi (mandarin fish): 122874653
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Entry
122874653 CDS
T08948
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator isoform X1
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu02010
ABC transporters
schu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
122874653 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122874653 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
schu02000
]
122874653 (cftr)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
122874653 (cftr)
Transporters [BR:
schu02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
122874653 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
SMC_N
RsgA_GTPase
DUF87
AAA_29
AAA_16
AAA_22
T2SSE
nSTAND3
MMR_HSR1
FtsK_SpoIIIE
NB-ARC
Zeta_toxin
nSTAND1
MeaB
AAA_30
Motif
Other DBs
NCBI-GeneID:
122874653
NCBI-ProteinID:
XP_044048756
LinkDB
All DBs
Position
LG4:28858944..28906645
Genome browser
AA seq
1512 aa
AA seq
DB search
MQKSPVEDANFFSKYFFCWMSPLLRKGFRKKLVLTDVYKAPSFDLADNLSERLEREWDRE
VVSAKNKPRLMRALARCFLGPFAFFGVLLYLGEASKAVQPQLLGRIIASFDPIHVPERSQ
GYFLALGLCLLFTARFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCVGLIWELIEVNGFCALAALTLLGIIQAW
LSQKMGPHRVKRGGMISRRLALTTEIVENIHSVKAYGWEEVMETIIKNIRQDEMTLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRRIFTTASYCMVLRMTLTRQLPGSIQ
MWYDTLALVKKIEEFLMKEEYRVLEYNLTTTELELVNVSASWDEGIGELFEKIKQENKAN
GHLNGDAGLFFTNLYVTPVLKNISLYLEKGKMLAVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGHISFSPQTSWIMPGTIRDNILFGLTYDEYRYTSVIKACQLEEDFALLPEKDKTLL
FEGGVTLSGGQRARLGLARAVYKDADLYLLDAPFTHLDIVTEKEIFEKCVCKLMASKTRI
VVTSKLEHLKRADKILLLHNGDCYFYGTFSALQAQRPDFSSLLLGMEAYDNINAERRSSI
LSETLRRVSIDETAGFRGPEPIRQSFRQSQPPIMVSGSQGHPGSDGYPEKRKQSLILNPL
AAARKFSFIGNSQQTANTPQSMTIEDGVRELSERKFSVVPEDDQVEEVLPRGNLYHHGLQ
HLNGQRRQSVLAFITNSQGQERREQMQSSFRKKLSITPQCDLASELDIYARRLSKDSIYD
ISEEVDEEDMEQCFADERENIFETTSWSTYLRYVTTNRSLVYVLIFIVFVFVLEVAGSVI
GIFLITDKISRDSTNPLSPNYIDEQHPNTSSPPVPLAVIVTPTSAYYIIYIYVATSESVL
ALGFFRGLPLVHTLLTVSKRLHEQMLSAVIRAPMAVLNTMKTGRIMNRFTKDMATIDDML
PLVLFDLIQLTLIVTGAIFTVSIMRPYIFIAAIPLAVIFVVLRKYFLRTGQQLKLLEAEA
RSPIFSHLIISLKGLWTIRAFGRQTYFEMLFHKALNTHTATWFHYLATLRWFLFRCDMIF
VLFFSTAAFIAVGTNQDKPGEVGIIVTLAMLILGTFQWAVITSITVDGLMRSVDRVFKFI
DLPSEEPLPGKSGVKGGPDLVIDNPHAQDCWPNRGHMDVQGLTVKYTEAGRAVLSDISFS
VEGGQSMGLLGRTGSGKSTLLSALLRLASTDGEISIDGVSWSSVSLHTWRKAFGVVPQRV
FILTGTFRMNLDPYGRYSDEELWRVAEEVGLKSVIEQFPDKLDFQLEDRGSVLSNGHKQL
LCLARSILSKARILLLDEPSAYLDPITLQVLRKTLKQAFSGCTVILSEHRVEPLLECQSF
LMIEGSSMKSYDSIQKLLNETSHLKQAMSPADRLHLFPTLHRLNSSKRAAPQTAKISSLP
EEAEDEVHDTRL
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcaccagtggaagatgcaaacttcttctccaaatatttcttctgttggatg
tcaccgcttctgaggaagggcttcagaaagaagttggtgctgacagatgtgtataaggct
ccttcttttgatctggcagacaacctctctgagaggctcgaaagagaatgggacagagag
gtggtgtcagccaagaacaagcccaggctgatgagagcgctggcccgctgcttcctcggc
cctttcgccttctttggtgtcctcctctacctcggggaggcttccaaggcggtgcagcct
cagcttctgggtcgcatcattgcctcctttgaccctatccacgttccagagcggagccag
ggatacttcctggccctgggcctatgcctcctcttcacagcccgcttcctcctgctgcaa
cctgccatctttggcctgcatcacctgggcatgcagatccgcatcgctcttttcagtctt
atatacaagaagaccctgaaactatccagccgagtcttggataagatcagcactggtcag
ctggtcagtctgatgtccgcccacctcaacaagctagatgagagcttgggtctggcacac
tttgtatggatcacccccctgcagtgtatactatgtgtgggtctgatctgggagctgatc
gaggtgaacggcttttgcgcgctggcagctctgactctgctgggcatcatccaggcctgg
ctgtcccagaagatgggacctcaccgggtgaagcgaggagggatgatcagccgccgcctg
gctctcaccacagagatcgtggagaacatccactctgtgaaggcgtacggttgggaggag
gttatggagaccatcatcaagaacatcaggcaggacgagatgacgctgacgaggaagatc
ggttccctgcgttacttctacagcgcctcgtacttcttttccgccatcttggtcatcgtg
tctgccattgtgccacatgcactcagtaaaggcatcatcctgcgccgtatcttcaccaca
gcctcctactgcatggtgctgcgaatgactctgacccgccagctgccaggatccatccaa
atgtggtacgacacactggcgctggtcaagaaaatcgaggaattcttgatgaaggaagaa
tacagagtgctggagtacaacctgaccaccactgaactggagctggtcaacgtgtctgca
tcctgggacgagggcattggtgagctgtttgagaagatcaagcaggagaacaaagcaaat
ggacacctgaatggtgacgccggcctattcttcactaacctctacgtcacacctgtcctc
aaaaacatcagcctgtacctggagaagggcaagatgctggcagtggctggatccactggc
tcagggaagagttccctgctcatgatgatcctgggagagttggtgccatcggagggtaaa
atcagacacagcggtcacatctccttctcaccacagacttcctggatcatgccgggcacg
attcgagataacatcctgtttggcctgacctatgacgagtaccgctacacctctgtcatc
aaggcctgccagctggaggaggactttgccttgctgcctgagaaagacaagacgctcctc
ttcgaaggaggggtgaccctcagtggtggtcaaagggctcgcctcggcctggccagggct
gtgtataaagatgcagacctctacctgctggatgcacctttcacccacctggacatcgtg
acggagaaagagatctttgagaaatgcgtctgtaaacttatggcctccaagacacgtatt
gtggtcaccagcaaattagagcatctcaaacgagcagacaaaatccttctgctgcacaat
ggagactgctacttctacggcaccttctcagcgctgcaggcccagcgccctgacttcagc
tccctcctcctcggcatggaagcttatgacaacatcaacgcagagcgacgcagctccatc
ctctcagaaactctccgcagggtctccatcgatgaaaccgctggcttccgaggcccagag
ccaattcgccagtctttccgccagtcacagcctccaataatggtctctggatcccaaggc
catcctggaagtgatggttacccagaaaaacgcaaacagtccctcatcctcaatcccctg
gcagctgctcgcaagttctccttcatcgggaactcccagcagactgcaaatactccccag
tccatgacgatagaggacggggttcgtgaactttctgagaggaaattctctgtagtacct
gaggatgatcaagtcgaggaggtgctcccaagggggaacttgtaccatcatgggttgcag
cacctcaacgggcagcggcgccagtctgtcctggcgttcatcacaaactctcagggccag
gagcgtagagagcagatgcagtcctccttcagaaaaaagctgtccatcacgccgcagtgc
gacctggcgtctgagctggacatttatgcccgccgcctgtccaaggacagcatttatgac
attagtgaggaagtggatgaagaagacatggagcaatgcttcgcagatgaacgtgagaac
atctttgaaactacctcatggagcacttacctacgctacgtcaccaccaacaggagccta
gtctacgtcctaattttcatcgtctttgtcttcgtccttgaggttgctggttcagtcatt
ggcattttcctcattacagacaagatctcgagggacagcacaaaccctttatcacccaac
tacatcgatgagcaacaccccaacacctcgtcgccccccgtccccctggcagtcatcgtc
acaccgaccagtgcttactacatcatctacatctacgttgccacatcggagagcgtgctg
gccttgggattcttcaggggtctcccattagtgcacacattactcactgtgtccaaaaga
ctgcatgaacagatgcttagcgctgtaatacgagcccccatggctgtgctcaacactatg
aagacaggccgaatcatgaacagattcaccaaggacatggccaccatagatgacatgctg
cctctggtgctgtttgacctcatacagctgacattgattgttacgggtgccatcttcact
gtgtccatcatgcggccttacatcttcatcgctgccatcccattagctgtcatctttgtt
gtcctcagaaagtacttcttacgaactggacagcaactcaagctactggaggctgaagct
cgaagccccatcttctcccacctcatcatctcgctgaagggtttgtggacaattcgggcg
tttgggcgtcagacgtacttcgagatgctcttccacaaggctctgaacactcacacagcc
acctggttccactaccttgccacgctgcgatggttcctcttccgctgcgatatgatcttt
gtcctattcttcagcactgctgccttcatcgccgtgggaaccaaccaggacaaaccaggg
gaggttggcatcatcgtgaccctcgccatgctcatcctggggactttccaatgggctgtt
atcaccagcatcactgtagatggactgatgcgttcagtggatcgggtgttcaagttcatc
gacctgccatcagaggagccgctgccagggaaatccggtgttaaaggaggcccagacctt
gtcatcgacaaccctcacgcccaagactgctggcccaaccgtggccatatggacgtccag
ggcctcactgtcaaatacacagaggctggacgcgccgtcctcagcgacatctccttctct
gtggagggtgggcagagcatgggtctgctgggtcgaacaggttcagggaagagcaccctg
ctctccgctctgctgcgtcttgcctccactgacggagaaatatccattgacggcgtctcc
tggagctccgtctccctgcacacatggaggaaggcctttggagtggtgccgcagagagtc
tttattctgactggcactttccggatgaacctagacccatacggacgctacagcgatgag
gagctgtggagggtagccgaggaggtgggtttgaagtcggtgatcgagcagtttccagac
aagctggactttcagctggaggacagaggcagtgtgttgagcaacggacacaaacagctg
ctgtgtctcgcccgctccatcctcagcaaggcccgcatcctgctgctggacgaaccctcc
gcctacctcgaccccataacgttacaggtcctgaggaagacgctgaagcaggcgttctct
ggctgcaccgtcatcctatcagaacacagagtggagccgttgctggagtgtcaatcattc
ctgatgatcgagggcagctccatgaaaagctacgactccatccagaaactgctgaatgag
acgagtcacctgaaacaggccatgagccccgctgaccggctccacctcttcccgacgctt
caccgcctcaactccagcaagagggcggcaccgcagactgccaagatctcgtccctgcca
gaggaagctgaggacgaagtccacgacactcgcctctaa
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integrated database retrieval system
