Siniperca chuatsi (mandarin fish): 122874857
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Entry
122874857 CDS
T08948
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
schu03036
]
122874857 (tdrd12)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122874857 (tdrd12)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122874857 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Helicase_C
CS
Motif
Other DBs
NCBI-GeneID:
122874857
NCBI-ProteinID:
XP_044049257
LinkDB
All DBs
Position
LG4:complement(31276410..31299198)
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AA seq
1448 aa
AA seq
DB search
MLKISILKVENPSCLWGRVVRGHGGDAETKEQYNNLLAQMNLFYHDVTQDLRKLKPTLLE
EGQVCVVYWSVMKSWCRAVVESIIVDSVSCQARCLLVDHGEQLIVPSDQIRVAVQNFLQL
PFWVRRFHLAGIKPTTLRVSLYEEKAELISSTQWDSSATLYLHNLLQASTRTEAVLLESE
SDSTSVELYLTVGNIKICVNDDLVAKKFAYYIRESADGGGLDEVDQFPVMLSSSILTQTV
CATSNKPTAQTQPPPVMSEGLAAAGAGDWLTASFTPQSQQHKLKTSEEGGRSKVTGEQLS
PGIQSKKVSDTAAAESDSSEDTDSSLAAALTKNLSLFRFLKFLNPGSSYQQVAPSVSQHE
ELKDCRPEETTAASSTCTGQEVYAASTPSTIHGKSGAEGLHESSEVEHLADEETSSSSRS
VESGPAEKMWRSEEDWACSRLLEWLNPEPLNPDADNAVVPSDPRRTGILVHSALPVDSCT
GLDDAPITDALRLVLRRKQYSALSPADRYSWPAVARGCNTVIVSHNADQPLSYLAPLLTH
ILLNSIFTSLTSSAGPIAVVLCPGWEKVQVVYDHLEELKVAPALHPVIVLLGVGKDEAKA
VRIPKNCLLLVTTPFSLVRLLSCHCFLFLRLYHLVLDEADRLFTLAPDQMATILQHFHKV
TSSEEKASSPQQLVAVAKRWSSHMEGLLANHMPYPCIVMTVPEEAALYANVQQIILMTLE
NSKISVLLGALDFNPNLGQKTLIVANSAQEVEDVFKAVSNKSVFCLKTHEGLTHQFEFVI
QQWRKDIGTGTHVILVTTNECLKCLGIRDATCVVHYGFPTSPKVFGSRLFCMAENFRNIS
EQVSSQDQTGSCPHLTRSVLLISERNACHVVGVLRYLVRTNSPLPPELLSFAQGVHVARE
DQKTNRPLCSYLKSFGVCRDGSVCPDRHSLISHLDQSVLPASGVIEVVPLYIKTASVFYG
RIVRKEDGGFMSMASEMNSFFADKKPGAKEVLEGGLYAVQEDEVFHRVKILSVPDRVDRL
FFSVFVRFIDVGKEEEVKSHQLLQLPEQFHSLPGQAVEIIVCRVKPVDAETDWHPKVTRA
ISQKIRGLQHRARAVFSLGNTVFVDPMVRVTQMPGMKTVINEYSLQSEILNTGMGVSNPE
HLDLLKALCQETKTSSGKEAGHISGSGDGPASLEVRIKAEEEVLAEVFRAAEVSRLADPP
PLKPCEPLSPVSSMIQSLVPAPPVPPAAEPHRVPVCDQKSLLASQAAIGQKNTHTADLKS
AEQMMRNGDGAELPTTSQNAWLNPCENGVPAGDTQSNSQQVISANETDCYDSSKSFHPQV
RWYQRSDTVIVTVKLMNPERQRCDFYPDRVVYSGSANGRTYRADLELHANIAADRCCWEM
KSNEPVLKLVKQQQGCWERLLRSKNIFVSYDMEHFEENEDSTPNGLWFVENTGEDNQYVN
SESGSESD
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagatatcaattttgaaagtcgagaacccgtcctgcctctggggtcgggttgtt
cggggtcacggcggtgatgcagagaccaaagaacagtacaacaatctgctggctcagatg
aacctcttctaccatgacgtcactcaggacctgcgcaagctgaagcccacgttgttagag
gagggacaggtgtgtgtggtgtactggtcagtgatgaagtcgtggtgtcgggctgtggtg
gagtcgatcattgtggactcggtgtcctgccaggctcgctgcctgctggtcgaccacgga
gaacaactcattgtcccctcagatcagatccgagtcgctgtgcagaacttcctccagctg
cccttctgggtgaggaggttccacctggcgggaatcaaaccaacaaccctgcgtgtgtct
ctctatgaggagaaggcagagctcatttcgtccactcagtgggacagctctgctacactc
tacctgcacaacctgctgcaagcgtcgacccggacggaggccgtgttgcttgaatccgag
tcagactccacctctgttgagctttatctgaccgtagggaacatcaagatctgtgtgaat
gacgatctggtggccaagaagtttgcgtattacatcagagagtcagctgatggcggcggg
ctggacgaggtggaccaatttcccgtcatgttgtcctccagcatcttaacccagactgtc
tgcgcgacctcaaacaagccgacggcacaaacccaaccacctcctgtgatgtcagaaggt
ctggctgcagccggagcaggtgattggctgacagcttcctttacacctcagagccaacaa
cataagctgaagacgtctgaggaaggcggcaggtcaaaggtcacaggagaacaactgtct
ccaggcatccaatcaaagaaggtctcagacactgctgctgcagagagtgactcatcagag
gacacagactcgtctctggctgcagctctgaccaaaaacctcagtctgttcaggttcctg
aagtttctgaatcctggcagcagctaccagcaggtggctcccagtgttagtcagcatgaa
gagctaaaagactgtcgacctgaagagacgactgcagcctccagcacctgcacaggacag
gaagtgtatgctgcaagcacaccttcaacgattcatggaaaaagtggagctgaaggtctt
catgagagcagtgaggttgaacatctggcagatgaagaaacgagcagttcgagtagatca
gtggagtcaggaccagcagagaagatgtggaggagtgaagaggactgggcctgttcacgc
cttttggagtggttgaacccggagcctctgaaccccgatgcagacaacgcggttgttccc
agcgatcccaggaggactgggattctggtgcactctgcactcccagtggattcctgcacc
ggcctggatgatgcccccatcaccgatgctctccgcttggtcttgcggaggaagcagtac
agcgctctgtctccagctgaccgttacagctggccagctgtggctcgaggatgcaacaca
gtcatcgtctcccacaacgctgaccagccactcagctacctcgccccgctcctcacccac
atcctgctcaactccatcttcacctccctcacctccagcgcagggcccatagccgtggtt
ctgtgtccaggctgggagaaggtccaggtggtgtatgaccacctggaggagctcaaggtc
gccccagccctccaccctgtcatcgtgctgctgggcgtcggcaaagacgaagccaaggct
gtcaggatccccaaaaactgcctgttgttagtgaccactcccttcagtttggtccgtctg
ctgtcctgccactgcttcctgttcctgcgtctgtaccacctagtgctagacgaggccgac
cggctctttactcttgctccagaccagatggcgaccatcttgcagcatttccacaaggtg
acctccagcgaggagaaggcttccagtcctcagcagctcgtcgctgtggcgaaaagatgg
tccagtcacatggagggtttgttagccaatcacatgccatacccctgtattgtcatgact
gtccctgaggaagctgctctctatgctaacgttcagcagatcatcctcatgactctagag
aacagtaagatctcagtactgttgggtgccttggatttcaaccccaatctcggccagaag
actctgatcgtagccaactctgctcaggaggttgaagatgtgttcaaggccgtgagcaac
aaatcagtattctgcctcaagacccacgaggggttaacacaccagtttgaattcgtcatc
cagcagtggaggaaagacatcggcactggcactcatgttattctggtgaccaccaacgag
tgtctgaaatgtctgggaatcagagatgcgacttgtgtcgtccactatggcttccccact
tctcccaaagtattcggcagccgactcttctgcatggccgaaaacttcagaaacatttct
gaacaagtttcctctcaggatcaaacagggagctgccctcatctcaccaggtcggtgctg
ctgatctctgagaggaatgcctgtcatgtagttggggttctgcgttacctggtgcgaacc
aactccccgctgccccctgagctgctgtcctttgcccagggcgtccatgtggcccgggag
gaccagaagaccaacaggcctctctgtagctacctgaagagctttggagtctgcagagac
ggcagtgtgtgtcccgaccgtcacagcctcatttcccacctggatcagtctgtgcttcct
gcctcaggagtcatagaagtcgtgcctctctacattaagacggcatcagtgttctacggt
cgtatcgtcaggaaggaggacggaggtttcatgagcatggcgtctgagatgaattctttc
tttgctgacaagaaacctggagccaaggaggtgctggagggaggcttatacgccgtgcag
gaggacgaggtcttccacagggtgaagatcctgtctgtcccagacagagttgaccggctg
tttttcagcgtcttcgttcggtttattgatgtgggaaaggaggaagaggtcaaatcccat
cagctcctccagctcccggagcagtttcactctctgcccggccaggccgtggagatcatc
gtctgccgggtcaaaccagtcgacgcagagaccgactggcaccccaaggtcaccagagcg
atcagccagaagatccgaggtctgcagcaccgagccagagcagttttcagtctgggaaac
accgtttttgttgatcccatggtccgtgtgacccagatgccaggtatgaaaactgtgatc
aatgaatacagcttacagtcagagatcctgaacactggcatgggagtcagcaacccggag
catctggacctgctgaaggcgctctgccaggagaccaagaccagcagcggcaaggaggcg
ggtcatatttctgggtcaggggatggtccggcgtctctggaggtcaggatcaaagctgag
gaggaagttctggctgaagtcttcagggcagctgaggtcagtaggctcgctgaccctcct
cctctcaaaccatgtgagccacttagtccagtatcttcaatgatccagtccctggtccca
gcaccaccagtaccaccagcagctgaaccccaccgggttccagtgtgtgatcagaaatcc
ctgttggccagccaggcagctattggacagaaaaacacccacactgctgatctgaagtca
gctgagcagatgatgaggaacggagatggagcagaacttcccacgaccagccagaatgcc
tggctcaacccctgtgaaaatggtgtacctgcaggtgacactcaaagcaacagccagcag
gtcatcagcgctaatgagaccgactgctatgactccagcaaaagtttccaccctcaggtc
cgctggtatcagagatccgacactgtgattgtaacggtgaagctgatgaacccggagcgt
cagcgctgtgatttctaccctgacagagtcgtttacagtggcagtgcgaacggtcggacc
tacagagccgacctggagcttcacgccaacatcgctgctgaccgctgctgctgggaaatg
aagtccaatgagccggtcctcaaactggttaaacaacagcagggatgctgggaaagactc
ctcaggagcaagaatatttttgtgagttacgacatggagcactttgaagagaatgaagac
agcaccccaaatggtctgtggtttgtggagaacacaggagaggataaccagtatgtgaac
tcggagagcggcagcgagagtgactga
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integrated database retrieval system
