Siniperca chuatsi (mandarin fish): 122875014
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Entry
122875014 CDS
T08948
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a isoform X1
KO
K05636
laminin, beta 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122875014 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122875014 (lamb1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
122875014
NCBI-ProteinID:
XP_044049628
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All DBs
Position
LG4:complement(33395483..33436332)
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AA seq
1794 aa
AA seq
DB search
MLELQLAVLLALQMFTCAQEGGAKDDVSLPELSDVCTEGSCYPATGDLLIGRSHQLSSTS
TCGLNRPEPFCIVSHLQEEKKCFVCDSVDPYDELTDQTSGHRIENVVTTFAPNRLKTWWQ
SANGLENVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKKWQVYRYFAYDCETS
FPSVSQGPMQKVDDVICDSRYSDIEPSTEGEVIFRVLDPAFRIDDPYSPRIQNMLKITNL
RVKFTKLHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPIQGASQARDGM
VHGHCMCNHNTKGLNCEQCQDFHHDLPWRPAEGRNTNACKKCNCNQHSDSCHFDMAVFVA
SGNVSGGVCDDCQHNTAGHNCEQCKPFYYQHPERDVRDPNICQPCNCDPLGSLNEGICDR
MTAVRAGLIAGQCRCKVNVEGERCERCKEAHYGLSDEPEGCRACTCSPVGTLPGENPCDS
ETGSCFCKRLVTGRDCDQCVSEHWGLSNDMDGCRPCDCDLGGSINNQCDQVSGQCVCRDH
MFGRRCDQVKSGFYFIALDHYTYEAEDAKFGPGVTVVPRPHPLDRTPTWTGIGLVNVPEG
AFLEFSVDNIPHSMEYDIIIRYEPQLPDQWEEVLMTVMRPGPIRADSRCVNTVPDDDNQM
ISLHPGSRYVVLPRPVCFESGLNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEI
FTASEGGDSSENSGWENFQRYRCLENSQSVIKSPMTDICRNFIFSISAMLHQGAKECQCD
PQGSLSTVCDPSGGQCQCRPNVIGRNCDRCAPTTFQFGPNGCRACACDPQGSQSSFCDQL
TGQCVCVSGAYGRQCDHCLPGHWGFPTCRPCSCNGHADDCDPNTGRCINCKDHSTGHTCD
RCMDGYYGDPMLGSGDHCRPCMCPDGPGSLRQFAGNCYRGDDSQQAICVCNTGYRGARCD
ECSPGYYGNPGEVGGQCQPCQCNNNIDMLDPESCDAQNGECLRCLYHSEGAACQSCKLGY
YGNALLQDCRKCVCNQLGSDPSSCPSSGDCHCDRGSGQCHCLPNVIGQHCERCAPDTWNM
ASGRGCQTCDCDPKHSYGTSCNEVSGQCSCQPGFGGRTCSECRELFWGDPEVKCHACDCD
PRGISGPQCNKVSGHCVCVDGVSGPRCDACARGFSGTFPDCRRCHECFAEWDRVIGQLTN
QTHRLVNKVNTIKASGVSGPYRKSIDSMERSVADIRVILNQHPASQPLTEIQELLQQTSD
LMGALTQMLNHTEQTLVQVEDSDSAAETKLDSVTLDAQKLERTVQELLDQVKFIKNSDIR
GATDSVIKYFLQSKAAEAQANASTIDPGSSVETSGALRQLTEDKLNQTREEFLRRHTEHA
QRLDDLAGELQTLDLSEISHKTCGSPSSGQDSCWSSPCGGLGCVDSEGQTKCGGEGCDGV
VTTASSAWRKAQDSEQEIISAMEEVEKLSKMVSEAKLKADEAKLSAQDVLMKTNRTKQKV
DQSNEELRGLIRQIRDFLTQDAADLESIELVANEVLAMQMPTTPAQLQALTDEIRQKVGE
LGHVETILQQSADDIQRAENLLDQARRASEEAADVKDSAEKVKRALKEAQRAQTAASSAI
QQAAADIQNTNNLLSSVESETADAELKLNNATQRLQRLEQDVTRLRDKAVNVTLSTERTN
RDAASIGKMAEEFKKDLDSELKDKYATVEQLIGQKAGGVADAKKRAGLLQQEAKELLLKA
SDKLQLLKDLEKSYEDNQRTLDVKAEQLVELEAAVKELLQEISHKVTVYSTCLF
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atgttggagcttcagctcgcggtgctgctcgctctgcagatgtttacctgcgctcaggag
ggcggggccaaggatgatgtcagcctcccggagctcagtgacgtgtgcacagagggcagc
tgttacccagcaacaggagaccttctgattggccgatcccaccaactgtcatccacctcc
acctgtggactgaaccgacccgaaccgttctgcattgtcagccatctgcaggaggagaag
aagtgttttgtgtgcgactctgtggacccgtacgacgaactgacggatcagacgagcggt
catcgtatcgaaaacgtcgtcactacattcgctccgaacagactgaagacctggtggcag
tctgcgaacggtctggagaacgtcaccatccagctgaacctggaggcagagtttcacttt
acacacctcatcatgaccttcaagacgtttcgacctgctgccatggtgatcgagcggtca
gctgacttcgggaagaagtggcaggtttatcgttacttcgcctacgactgcgagacttcg
ttcccgtcggtttcccagggtccaatgcagaaggtcgatgatgtcatctgtgactcacgt
tactccgacatcgagccgtccactgaaggagaggtgattttcagagttctggacccggcg
ttcagaatcgacgatccctacagccccagaatccagaacatgttgaagatcaccaaccta
cgggtgaagttcaccaaactgcacacgctcggagacaatctgctggactctcgtatggag
atcaaggagaagtattactacgccatatacgacatggtggtccgaggaaactgcttctgc
tatggtcacgcctcagagtgtgcccccatccagggagccagccaggccagggatggcatg
gttcacggtcactgcatgtgtaaccacaacaccaaaggtctgaactgtgaacagtgtcag
gatttccaccacgacctgccgtggagaccggccgagggacgcaacaccaatgcctgcaag
aagtgtaactgtaaccagcactcagactcgtgtcacttcgacatggccgtgttcgtggct
tcaggaaacgtcagtggaggagtttgtgacgactgtcagcacaacacggccggacacaac
tgcgagcagtgtaaaccgttttactaccaacatccagagagagacgtcagagaccccaac
atctgccagccctgtaactgcgaccctctgggctctctgaacgaaggaatatgtgaccgg
atgacggccgttcgagccggtctcatcgccgggcagtgtcgctgtaaagtcaacgtggag
ggagaacgctgcgaacgctgcaaagaggcacattacggactgagcgacgagcctgaaggc
tgcagggcatgtacctgcagccctgtgggaacacttcctggagaaaatccctgcgacagt
gaaacaggaagttgcttctgtaaacgtctggtgactggacgagactgtgaccagtgtgtg
tctgaacactggggtcttagtaatgacatggacggctgcaggccatgtgactgtgacctg
ggaggatccatcaacaaccagtgtgatcaagtgagtggtcagtgtgtctgcagagatcac
atgttcggtcgtcgttgtgatcaggttaagtctggattctacttcatcgctttggatcac
tacacctacgaggctgaggacgccaagtttggacctggagtgacggtggtcccaaggccc
catcctctggaccgcactcccacctggacaggtattggcctggtcaacgtcccagagggg
gccttcctggagttctctgtggacaacatcccccactccatggagtacgacatcatcatc
cgctacgaacctcagctgcctgaccaatgggaggaggttctgatgacagtgatgagacct
ggaccaatcagagcagacagtcgctgtgtcaacactgtgcccgacgacgacaaccagatg
atctcacttcaccccggctcacggtatgtggttcttcccagaccggtttgttttgaatct
ggtctgaactacacagtccgcctcagtctgccgctgtactcggccctcagcgacgtccag
tctccatacacgctcattgactcgatcgtgttgatgcctcactgtaagaacttggagatt
ttcacagcctcagagggaggagactccagcgagaacagtggttgggaaaattttcagcgt
tatcgttgtctggagaacagccagagcgtcatcaagtcaccaatgactgacatctgcaga
aacttcatcttcagcatctccgccatgttgcaccagggagctaaagaatgccagtgtgac
cctcagggctccctcagcaccgtgtgtgaccccagtgggggtcagtgtcagtgtcgcccc
aacgtgatcggcaggaactgtgacagatgtgctccgaccactttccagttcggacccaac
ggctgcagagcgtgtgcgtgcgacccacagggttcacagagttcgttctgcgatcagctg
accggtcagtgtgtttgtgtttcgggagcatacggtcggcagtgtgatcactgtctgcca
ggtcactggggattccccacctgccgaccctgctcctgcaacggacacgccgacgactgt
gaccccaacactggacgctgcatcaactgcaaggaccatagcactggacacacctgtgac
aggtgtatggatggttactatggcgacccaatgctggggtcaggtgaccactgtcggccc
tgcatgtgtcccgacggccctggcagcctgcgacagttcgcgggaaattgttaccgcggt
gacgactcccagcaggccatctgtgtctgcaacactggatacagaggtgctcgctgtgac
gagtgctcacctggttactatggaaaccctggggaggtgggggggcagtgtcagccctgt
cagtgcaacaacaacattgacatgttggacccggagtcctgcgatgcacaaaacggcgag
tgtctgcgctgcctttaccacagcgagggcgccgcctgccagagctgcaaactgggttac
tacggcaatgccctgctgcaggactgcaggaagtgtgtttgtaaccagctgggcagcgat
ccctccagctgtccgtcgtccggcgactgtcactgcgaccgcggcagtggtcagtgtcac
tgcctcccgaacgtgattggtcaacactgcgaacgctgcgcgcccgacacctggaacatg
gcgagtggccgcggctgtcagacctgtgactgcgaccccaaacattcgtacgggacttcc
tgcaacgaggtcagtggtcagtgttcctgtcagcccggctttggaggaagaacatgcagc
gagtgtagagagctgttctggggagacccagaggtcaaatgtcacgcatgtgactgcgac
cctcgcggtatctcagggccgcagtgtaacaaagtcagtggtcactgtgtctgtgtggac
ggggtttctggtccacgctgcgacgcctgcgcccgtgggttctccgggaccttccccgac
tgccgccgctgccacgagtgctttgcagagtgggaccgcgtcatcggtcagctgaccaat
cagacgcaccgactcgtcaacaaggtcaacaccatcaaagccagcggagtcagcggaccg
tacaggaagtccatcgacagcatggagaggagcgttgccgacatccgggtcatcctgaac
cagcacccggcctcgcaaccgctgaccgagatccaggagcttctgcaacaaaccagtgac
ctgatgggggcgctgacccagatgttgaaccacactgaacagactctggtccaggtggag
gactcggactcggctgcagaaactaaactggactctgtgacgttggatgctcagaaactg
gagcggacggttcaggagctgctagatcaggtcaagttcatcaagaactctgacatcaga
ggggcgacggacagcgtcatcaagtacttcctgcaatctaaggcggctgaagctcaagcc
aacgcctccaccattgacccgggaagctctgtagaaacctccggtgctctacggcaactc
acagaggacaaactgaaccaaaccagagaggagttcctgaggagacacactgagcatgct
cagagactagacgacctggcaggagagctgcagacgctggacctatcagagatcagccac
aagacctgcggcagtccatcatcaggccaggactcgtgctggtcctctccctgtggaggt
ctgggctgcgtggactctgagggtcaaaccaagtgtggaggtgaaggatgtgacggcgtg
gtgacgacagccagcagcgcctggaggaaggcccaagactctgaacaggaaatcatcagc
gccatggaggaagtggagaaactctccaagatggtgtcggaggccaaactgaaagcagac
gaggcgaagctgagcgctcaggacgtcctgatgaagaccaacagaaccaaacagaaagtc
gaccagagcaacgaggagctgagaggtctcatcagacagatcagagacttcctcacacag
gacgctgcagacctggagagcatcgagctagtggccaacgaggttctggccatgcagatg
ccgaccacgccggctcagctgcaggccctgaccgacgagatccgacagaaggtgggagaa
ctgggacacgtggagaccatcctgcagcagagcgccgacgacatccagagagccgagaac
ctgctggaccaggcccgcagagccagtgaggaggcggcagacgtgaaggactctgcagag
aaggtgaagcgagctctgaaagaagctcagagagctcagactgctgccagcagcgccatc
cagcaggccgccgccgacatccagaacaccaacaacctgctgtcatccgtggagtcggag
acggccgacgcagagttgaagctgaataacgccacccagaggcttcagcggctcgagcag
gacgtgacgcggctgagagacaaagctgtaaacgtcacgctgagcaccgaacggaccaat
cgggatgcagcgagcatcggaaagatggcagaggagttcaagaaggacctggactcggag
ctgaaggataaatacgccacagtggagcagctgattggtcaaaaggcagggggcgtggcc
gatgcaaagaagagggcaggtttactgcagcaggaagccaaagagctgctgctgaaagcc
agcgacaaactgcagctgctcaaagatctggagaagtcttacgaagacaaccagcggact
ctggacgtgaaggcggagcagctggtggagctggaggctgccgtgaaggagctgctgcag
gagatcagccacaaggtcaccgtctacagcacctgtctgttctaa
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integrated database retrieval system
