Siniperca chuatsi (mandarin fish): 122875036
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Entry
122875036 CDS
T08948
Symbol
lmo7b
Name
(RefSeq) LIM domain only protein 7b isoform X1
KO
K06084
F-box protein 20
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
122875036 (lmo7b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122875036 (lmo7b)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122875036 (lmo7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
122875036
NCBI-ProteinID:
XP_044049680
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All DBs
Position
LG1:13521800..13553165
Genome browser
AA seq
1342 aa
AA seq
DB search
MEWRQQTSVSCADAFSEAQRWIEEVTGKSFGCNDFRAALENGVLLCDLINQLKPGIIKRV
NRLSTPIAGLDNVNVFLKACGKLGLNVSQLFHPGDLQDLSTRATLRGDESNRRLKNVLIT
IYWLGRKAQLDAFYSGPPLNFKAFEGLLGLALSKALDEGSMFVKDSGYKECWYPEREECL
HMRPSYKMANSVDSIDSLESRALRPNSEGCGSDAEAEQVFKMETTQPPTQQNKGYIPPPL
LRKKQGREENGRGCSSPLARAYQIQVRPERPVQVNPGWIWSKSLSDIPMVYPVRKVPDVN
TIYDVEKDTGVARERNQENKRKCSVAAKDSEAQWQDDLTKWKNRRRSTKSDLRRKSQDRE
HVITQMINGAVTNFEKNEAGGLLNRDQQSPRRHNPAPRPYSTSPPSKSSNCDLRPRTRAL
LARSYTTEAPFIPTAPLSPHNSANTRGSSVGAMPASDGNILGEETHFASLASDGAGVTTP
SLDYPFSSQTQAKAQGSPAPFQPTSELAQSENVFTNQIATLTTTVQPNETTNSTSTRDPT
ASMSSQKELPFCVDPNFCPDAVNQVGVDDLEGHQNHKSQEESHKTSWEPAVEQGRGRQAA
GVYKYLSRTGSWSGSASLPRGYRRSEGSSRLSTAITARPFGTKQSRVSSLPRLCNVDNNQ
GLLLKSEKEESLSPPPESSLKRQTASAHLKGQYQASTTQKKANKEKQNGTEQGEEVKGAT
LSSQTSFQITGYHHQPYNQTQLLPQPCSNLQAHHNISSSLPSNVSIGRPKVDHSDMRVSL
TLKPNSRPDFGFQTHWDSTGARVKIIQPGSPAELCQLCVDDEIVAVNGVAVAHMNYNQWK
DKMTSSLQTGSLTMDIRRYGNKDWNTSEGSHHNQPGQSRMTLNLTASAPVLIGCPDHHAN
SGASTETTVRKVSKFNGQTDNVLQGKAMHGALADNHRTARSKDNNNITRKNQSRRAEFFK
QKGSAGFSSWVYLCGGSESAISDLQVPSLSPSSSSWSWDREEDRKRQEKWQEEQERLLQE
QYQRDQERLEAEWQRAQQEAMGELNRNSRQNTFEMTNGRERPASIRPHVNGLTNKTREEE
QSADRDERKEAGSKPQSNAQGVQDDKITEQAWAEDSCGFAQLSPAHRAKSLSTPALAGPH
KQTRGDERKRKGQSVSKVEHERQQILEEMKKRTQLLTDNSWIRQRSSSFYKEQICVGVPL
KRHESLDNLDTWRQCPLSTATFSYPRPHSAAAGYCAPSRNSSSRYSTGAILSQRYTSMDP
SHYGRMVSGRRTCCVCERVLGSGAAMVIEALSLCFHLACFQCVGCHRHLGGTEIGVQVRI
RNRKPYCEPCYFQLKSAGAPSM
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgccagcagaccagtgtcagctgtgcagacgcattcagcgaggctcaacgc
tggattgaggaagtgactggaaaatcgtttggttgcaacgacttccgtgctgccttagag
aatggagttctgctttgcgacttgatcaaccagttgaaacctggcatcattaagagagta
aacaggctttctactcccatcgctggcctggataatgtgaatgtattcctgaaagcctgt
ggcaaactgggactcaatgtgtcacaactgtttcatccaggagacctgcaggacctgtcc
actcgtgcaacactcaggggagatgaaagcaacagaagactcaaaaatgttctgatcaca
atctactggttgggtcgcaaagctcagctagacgcattctacagtggtcctccgcttaac
ttcaaggcctttgaagggctgttagggttggccttgtccaaggcgctagatgagggcagt
atgtttgtaaaagacagcgggtacaaggagtgctggtacccagagagggaggaatgtcta
cacatgagaccgagctataagatggcaaactcggtggacagcatcgactctctggaatcc
cgagccctccgcccaaacagtgaaggttgtggaagtgacgcggaagctgagcaggtgttc
aagatggagactacacagcccccaacccagcaaaacaaaggttatatccctccaccactc
ctacggaaaaaacaaggacgggaggagaatggaaggggctgctctagtccactcgccaga
gcatatcaaatccaggtcagacctgagagaccagttcaggtcaaccctggctggatttgg
agcaaatcactcagtgacatcccgatggtataccctgtacgtaaagttcctgacgtgaat
accatttatgatgtggagaaggacactggcgtggcacgggagcggaatcaagaaaacaaa
cggaagtgtagtgttgctgccaaggacagtgaagctcagtggcaggatgacttgacaaag
tggaagaaccgtcgcaggagcaccaagtctgacctccgcaggaagtcgcaagacagagag
catgtcattacccagatgatcaatggtgctgtgactaactttgagaagaatgaagcaggc
ggattgctaaacagagaccagcagtcaccacgcaggcataaccctgccccccgtccttac
tccacctctcctccatcaaagtcatcgaactgtgatctccggccacgtactcgagctctg
ctggcgcgcagctacaccactgaggcacctttcatccccacggctccgcttagtccccat
aactcagccaacactcggggatcatcagttggagccatgcctgcctctgatgggaacatc
ttgggagaggagacccactttgcctccttggcttcagatggagcaggagttaccacacct
tccctggactaccctttcagctcccagacccaagccaaagcccagggtagcccagctcct
ttccagcccacatctgaactggcccagtcagaaaatgtttttacaaaccaaatcgccact
ctgaccacaactgtacagccaaacgagaccacaaattcaaccagcaccagggatcctacg
gcatccatgtcgagtcaaaaggaacttccattctgtgttgatccaaatttttgccctgat
gcagttaatcaggtaggagttgatgatcttgagggccaccagaaccacaagtcccaggaa
gagagccacaagacctcttgggaaccagctgtggagcaaggcagaggccggcaggctgca
ggcgtgtacaagtacctttccaggactgggtcgtggtccggctcagccagccttcctcgt
ggttaccggaggtccgagggctcatcccgtctctctactgcaatcacagccagaccattt
gggaccaagcagtccagggtgtcctcactgccgagactgtgcaatgtagacaacaaccag
ggtctgctgttgaaaagtgagaaagaggaatctctttctccaccccctgaatcttcgctc
aaaagacagactgcgtccgcccatctgaagggtcagtaccaggcttcaaccacacagaag
aaagctaacaaggaaaagcagaatggtacagaacagggggaggaggtgaaaggtgccact
ctttccagccagacctccttccagatcactggctatcaccatcagccctacaaccaaacc
cagctactgccgcaaccttgttcgaacctgcaggcccaccacaacataagctcgagtctc
ccctctaatgtgagcattggccgcccaaaggtggatcacagtgacatgagagtgagcctt
actcttaaacccaacagtagaccagactttggtttccagactcattgggactcgacaggg
gcgagagtcaaaatcattcaacctggcagtccagcggagctttgccagctgtgtgtggac
gatgagattgtggctgttaatggagttgcggtggcacacatgaactacaaccagtggaag
gataaaatgacatcttccctgcaaaccggcagtctgaccatggacattcggcgctatggc
aacaaggattggaacaccagtgaggggagtcatcacaaccagccaggccagagcaggatg
accctcaatttgactgcctcagcgcccgttctgataggttgtcctgatcaccatgccaac
agtggtgcctctacagagaccacagtcaggaaagtgtccaaattcaatgggcagacagac
aatgttttacaaggtaaagccatgcatggtgcgcttgctgacaaccacaggacagccaga
agtaaagataataataatattactaggaaaaatcagtcaaggagggcagaatttttcaaa
cagaaaggctctgcaggattcagctcatgggtttacttgtgtggaggttcagaatctgca
atatctgatctccaggtgccatccctcagcccctcctcatccagctggtcgtgggaccgt
gaggaggatcgaaagcggcaggagaagtggcaggaagaacaggagcgcctcctacaggag
caataccagcgggatcaggagaggctggaggcagagtggcagagggcacaacaagaggca
atgggggagttaaacaggaactcaaggcaaaacacctttgagatgaccaatggacgtgag
aggcctgccagcatccggccccatgtgaatggactgacaaacaaaaccagagaagaagag
cagagtgctgacagagatgagcggaaggaagcgggatcaaaacctcaaagtaatgcacaa
ggagtgcaggatgacaagattactgaacaagcctgggctgaggattcctgtggctttgct
cagctgtctcctgcacacagggcaaagtccttgtctaccccagcattagctggcccccac
aaacagacaagaggtgatgagaggaaaagaaaaggacaatctgtgtctaaggttgagcat
gaaaggcagcagattttggaggagatgaagaaaaggactcagcttctgaccgacaacagc
tggatacgtcagcgcagcagcagtttttacaaggaacaaatctgtgttggggttcctctg
aagaggcatgagtctctggacaacctggatacttggcgtcagtgcccactctcgaccgct
acattcagttaccctcgtccacactcagctgccgcaggttactgtgctcccagtaggaac
tcctcctcccgctacagcactggcgcaatattatcccagagatacacatccatggacccc
tctcattatggcaggatggtcagtggcaggaggacttgctgtgtgtgtgagcgtgtcctg
ggtagtggggcagccatggtcatagaggcccttagtctctgcttccacctcgcctgtttc
cagtgtgtgggctgccaccgacatctcggaggaacggagatcggagtccaggttcgaatc
cgaaacaggaagccctactgtgagccctgctatttccaactcaagtccgctggtgccccc
tccatgtga
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