Siniperca chuatsi (mandarin fish): 122875440
Help
Entry
122875440 CDS
T08948
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
schu03009
]
122875440 (ighmbp2)
03012 Translation factors [BR:
schu03012
]
122875440 (ighmbp2)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122875440 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
122875440 (ighmbp2)
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
Other ribosome biogenesis factors
122875440 (ighmbp2)
Translation factors [BR:
schu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122875440 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
Helicase_RecD
ResIII
nSTAND3
AAA_16
AAA_22
UvrD-helicase
Flavi_DEAD
IstB_IS21
SLFN-g3_helicase
AAA_28
PhoH
ABC_tran
DnaB_C
AAA_25
NPHP3_N
AAA
ATPase
HEM4
SRP54
Zot
AAA_33
AAA_31
Motif
Other DBs
NCBI-GeneID:
122875440
NCBI-ProteinID:
XP_044050494
LinkDB
All DBs
Position
LG4:10580784..10587503
Genome browser
AA seq
995 aa
AA seq
DB search
MAIEQFVSKTLELLQEEREAEIEETRIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVVLEPRKHLGFSSLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQASVSVAFDDS
KDGLSFDTDALYNLLKLANDVTYKRMKKALNALNGYSNGPAANLINVLFGDAKPSSQSQP
NEVEFFNSNLDDSQREAVSFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
AFMGMKKHEKGERVNFKREIGELRKELKTREATAITQILKSADVVLSTNTGACDGGPLKF
LPAEHFDWVVIDECAQALESSCWITLLRARKCILAGDYKQLPPTIKSQTAASKGLSLSLM
ERLIQMYGDSVVRMLTVQYRMNSTIMEWASKEMYQGRLTAHSSVERHVLKDLPGVTCVEE
TGTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYNL
QVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTR
ARRHITVVCDTQTVQNHAFLKSLIDHMTEFGEVRTAFEYIQDIVPQNYTRDHKDTKANSS
AGSTMSTKQKVKDQPPSKAKQGKKKSTCTSSNKNTAGTEKYSKTCITALTEEEQKKNRYT
EIREQVERFLKDLNRSELQFPSSFNSHDRLLVHQVAEELGLVHESKGEGKDRCITVSRPL
VSTPAEKPTQEEEEEEEAAQEEETVPNLQREPLCQPPLDLKSLHLERMKREQQKREENTY
QKKQQNNIPPAQAQSSKKPKSAKGKNRTKAGACDIAAAAAPDDDFDTLINAVRKAESVCS
FVKCKASVLTLGQLCLFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKD
KSMDPNKKAYLQRKLDSKLKDMASQRKPKNKEDSQ
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgaacaatttgtgtcaaagacactcgagcttctacaggaggagagggaggct
gaaatagaggagaccaggatatggcaggagaacatctctctcaaggatcttcaaaataaa
ggagtttgcctgctgaaattgcagataggaagtcagtccacaggcctgtatggtcgcaca
gtcgtcgtcctcgagccaagaaagcatcttggtttctcatctctgccaagcaacagcttt
ggacctggggacatagttggcttgtatgacactggcggatgcactgcagcctcacaaatc
ggcacaggaatagtgacaagggtcagccaagcttctgtaagtgtggcttttgatgattca
aaggatggcctcagctttgatacagatgctctttacaacctcttaaagttggcaaatgac
gtcacttacaaacgaatgaaaaaggccttgaatgcattaaatgggtacagcaatggacca
gctgccaatctgataaatgttctttttggagacgcaaaaccttcttctcagtcacagcca
aatgaagttgaattctttaactcgaacctggatgattcccagagagaggctgtgtccttt
gctctgtctcagagggaactggctgtgattcatggaccaccaggcactgggaaaaccacc
acagtggtggaaattatcctgcaagcagtcaaacaaggccaaaaggtcttgtgctgtgcc
ccctctaacgtggctgttgataatttagtggagaggttagcccggtgcaaggcgaaggtc
ctgaggctgggtcaccctgccagactgctggagtccatacagaaacattcactagacgcc
atcctcgctcagagtgacaatgcaaacatcattgctgatatccgtaaagacatcgataaa
gcttttatgggaatgaagaagcatgaaaaaggagagcgggtgaacttcaaaagggaaata
ggggagctaagaaaagagctgaaaaccagggaagcaacagctatcacccagatcctaaaa
agtgctgatgttgtgttatcaaccaacacaggtgcttgtgatggcggccctctgaagttc
ctgccagcagagcattttgattgggtggtgatagacgagtgcgctcaggccttggagagc
agctgctggatcaccctgctccgagcacgcaagtgcattctggcaggagactacaagcag
ctaccacctacaatcaaatcacaaacggctgcatcaaagggcttgtctctcagtcttatg
gagagacttatccagatgtatggggactcagtggtccgtatgctaacagttcagtaccgc
atgaacagcaccatcatggagtgggcctccaaagagatgtaccagggaagactaacagct
cacagctcggtcgagagacatgtgttaaaagatctaccaggagtcacctgtgtagaagag
accggcacaccgctgcttcttatcgacactgcaggctgtggtctgagtgagatggaggtc
acagatgagcagtccaaaggcaatcaaggtgaggtagacattgttgaactgcacataaag
gccttgactgaagctggggttaaagctaaagacatagctgttattgctccatacaatcta
caagtcgatcttctgcgtcagaaactgtctgcgaggcatccggagctggagataaagtca
gtggatgggtttcagggcagagagaaagaggctgtggtgttgtcattagttcgatccaac
agaaaaggggaagttggatttctggcagaggacagaaggattaatgtggctgttacacgt
gcgagacgtcacatcactgtagtgtgcgacacccaaactgtccagaatcatgctttcctg
aagtccctgatcgatcatatgactgagtttggcgaggtcagaacagcatttgaatacatc
caagacatcgtgccacagaactacacccgcgaccacaaagacacaaaggctaattcgtct
gccggtagcaccatgtccaccaaacagaaggtgaaagatcagcctcccagcaaggcgaag
caaggaaagaagaagtccacttgtaccagcagtaataaaaatactgcaggtacagagaag
tactcaaagacctgtataacagcactgacagaggaagagcagaagaagaacagatacact
gagatcagagagcaggtggagcgctttctaaaggacttaaatcggagtgaactacagttt
ccatcatcatttaactcccatgaccgcctgctggtccaccaggtcgctgaggagctgggc
ctcgtgcatgagagtaaaggcgaggggaaagacaggtgcatcactgtctccaggccgctg
gtgtcaacaccagctgaaaagccaacacaagaagaagaagaagaagaagaagcagcccag
gaagaggaaacagtcccaaatctccaaagagagccgctgtgccaacctccattagacctg
aaaagtttacatttggagcgaatgaagagggagcagcagaaaagggaagaaaatacttat
caaaaaaagcaacagaacaacatcccaccagctcaggcccagtcatcaaagaagcccaag
tcagctaaaggaaagaaccgaacaaaagcaggcgcctgcgacatcgctgctgccgctgct
ccagatgatgactttgatacgcttatcaacgctgtcaggaaagctgagagtgtgtgcagt
tttgtcaagtgtaaagcttctgtgctaacacttggacagctctgcctgttctgcaacaga
cagtattgtctcagtcatcatataccagaggttcacggctgtggagataaagccaagtct
catgctcggatgagaataagcaaagaaggcgttctttatgctgggagtgggaagaaagac
aaatctatggaccccaataagaaagcctatctgcaaaggaaactggactctaaactgaaa
gatatggcatcacagaggaaaccgaaaaacaaagaggacagtcaatga
DBGET
integrated database retrieval system
