Siniperca chuatsi (mandarin fish): 122875443
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Entry
122875443 CDS
T08948
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03420
Nucleotide excision repair
schu04115
p53 signaling pathway
schu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122875443 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
122875443 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
122875443 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122875443 (ddb2)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122875443 (ddb2)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122875443 (ddb2)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
122875443 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT140_1st
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
122875443
NCBI-ProteinID:
XP_044050497
LinkDB
All DBs
Position
LG4:complement(10604586..10611116)
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AA seq
500 aa
AA seq
DB search
MKGRPTKSDASESKGKVKKRTGETSAPTLSKRLRAKKDGEISKQAAGPPLKSAGVQKRSG
RGSILHYIYKSTLGQSLHSQMRQCLQEPFVRSLSSYHFHGATSPFDRRITCLEWHPTHPT
TLAVGSKGGDIYLWDFEVPMKKTFIQGVSSCSGAGDFIGGMKFCPMDLSKVYVASGEGSL
TMQSFEGRAPAVLSRTQDCGHDHHNVCYWYCCVDVSVSRQMLVTGDNVGQLLLLGLDGQK
IFSDKLHKAKVTHAEFNPRCDWLLATASVDHTVKLWDLRNIKDKKSFLHDMPHERAVNSA
FFNPLDCSKLLTTDQYDQIRVYSSSDWSKPQHIIQHPHRQFQHLTPIKATWHPVYDLIVV
GRYPDDRVCPGDQRSIDIFDSNTAELVCQLQDPTASGIKSINKFNPVGDVIGSGMGVTVL
VWDRNESLISDRHKEQEETLTSADGLRCQRRTQQRSSRDRRGPAVDAKLKKKLASMQRSE
TKTKTKTGCTKQKQAQMRKK
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcagaccgacgaagtccgatgcatctgaatcaaagggaaaagtgaagaaaaga
accggggagacctctgccccaactctctccaaaaggctacgagccaaaaaagatggagaa
atatccaaacaagcagcagggcctcctctcaagtctgcaggagtccagaagagaagtggg
cgaggaagcatcctgcactacatttataaaagcactttggggcaaagtcttcactcacag
atgagacagtgtcttcaggaaccttttgttcgctcactgtcgtcgtatcatttccacggt
gctaccagccccttcgaccgcaggatcacctgtctggagtggcatcccactcatcccacc
actctggctgtggggtccaagggtggtgatatatatctgtgggactttgaggtgcccatg
aagaaaacttttattcaaggggtgagttcctgcagcggagcgggagattttattggaggg
atgaagttttgcccgatggacctttccaaagtctatgtggcttctggtgagggctcgttg
accatgcagagctttgagggccgcgcacccgctgttctgtccagaactcaagactgtggc
cacgatcaccacaatgtttgttactggtactgctgtgtagatgtgtcagtaagcagacag
atgcttgtgacaggagacaatgtgggacagctcttactcctgggtttggatggccaaaag
attttcagtgacaagttgcacaaagccaaagtgacccatgcagagttcaacccccgttgt
gattggttgttggcgacggcctcagttgaccacacggtgaagctttgggacctgagaaac
atcaaagataagaagagcttcctccatgacatgcctcatgagagagctgtcaactctgcc
tttttcaacccgttggactgctccaagttgctcaccacggatcagtatgaccagatccgg
gtctactcatcctctgattggtcgaagcctcaacatatcatccaacatccgcacagacag
tttcagcatctcacacccatcaaggccacatggcaccctgtctatgacctaattgtggtg
ggccgctaccctgatgaccgggtttgccccggagatcagaggagcatcgacatctttgat
tccaacacagcagagcttgtgtgtcagctgcaggatcccacagcttcagggatcaaatct
atcaacaaattcaatccagtgggtgatgtgattggatctggaatgggtgtaacggtgctg
gtctgggacaggaacgagtcattgatcagtgatcggcacaaagaacaggaggaaaccttg
acctcagcggacggcttaaggtgccagaggaggactcagcagcgctccagcagggacagg
agaggtcctgctgtggatgcaaagctcaagaagaaactagcttctatgcaacgatcagag
accaaaaccaagacgaagactgggtgtactaaacaaaaacaagcccagatgaggaagaag
taa
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