Siniperca chuatsi (mandarin fish): 122875841
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Entry
122875841 CDS
T08948
Symbol
zgc:152968
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122875841 (zgc:152968)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
schu03009
]
122875841 (zgc:152968)
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
Pre-60S particles
RNases
122875841 (zgc:152968)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
Motif
Other DBs
NCBI-GeneID:
122875841
NCBI-ProteinID:
XP_044051333
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All DBs
Position
LG5:27676288..27684156
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AA seq
1217 aa
AA seq
DB search
MFPSSGLFADINCPFSKRGLCERPHCLYKHATELRDMFGASYKSPIVDFAGVHNGYPHAA
CGARVNDETKDDCLQELERINKEIETVRHEVEQEQRRLSRYQTVQAGSRNTEPNSSVPKS
ETAGKNTDRGSCELSKSTNFTKTYSRARKYVVDNSKPRTDLEYDPLSNFSAGLRSYSSSG
KEQKVKNGQGLKRARNAVPCDQKKPVKYQDQPLDDSNEDSVLIIDVPPLPDKKRRRAQKP
VDSLAGKSLQDKLEELKEVKTAPILLDSPLLHLAKAETSPPASAVEENRVYSDCGVENDQ
GPSNLYENKEWKNIPVDGSVIDFTECLEDLATESQKITHFQAAETVVEKSPEPASPPAVT
DRQDQNWNNLVVEKEENKFQVELPQCELPHSVEKMNPLQPHHFPPKNSLFYKAPAANSDS
PCRQHTKQAQTTEQPAQNRVSNQWSSTKCVPSVLPHSQKTSSKMPGQMQGKATPPESYLG
PAEPASGSSQGQARHNSSASSLTNRDESSSASAGPLLVKADTEEFIIIDSTSDDEDELNY
SEVELSDSDPMEECYRIFMEANNEQDKGNEEQPDVSVGAMDVEKPELNIKAQASSGKKRV
AHEAKHTEQPVAKSRPQPQVLVPLRGPVVSGFSSQPSITSKIQQVQQRASMLTASVKGSQ
AFVSSTCQRKPETQSAPSPSTQTPENLQPAPVQNAYYNYIPLGPAVIEVGNNLHLILPEG
TFPLPVTSSSSQVTSVLTPISQVHMNAVAVKQTYHSPAVTPVQRYRTTAPVLIPAPARKP
SLTSAFALAHSNPAVSTPQAAVHATVKPVPTKRKLKQQCEAAKDKVPHDIRQRYINMFTE
EFLKTTANVNDAFEKALAEERTVYNRSVNKLKYLSVAVNALKRLKNQSAVAAKDENDVNS
QRFKGNIPLNLKKFKGNADDMALYESLNDYILTEGRLIESNYPVQHPEKPGCAVLFADNK
KCNTDPLKRICCRCGATYSVSQTGKHTRKDECNYHYGKGVKNKVPGGVETRYSCCEGVMG
APGCQVFKLHVHDSLSLDGFVSTVPRHPSDTSCPGVYSLDCEMCYTIHGLELSRVTVVNS
SLQVVYDTFVRPNNEVIDYNTRFSGISEEDVKGNHTSLREVQETLLSFISADTILIGHGL
ETDLCALKLLHGKVVDTSVVFPHRLGPPHKLTLNNLTAEYLRRIIQESVCGHDTAEDAAA
CMELMLWKVKEDGKLKK
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttccctcgtctggtctttttgctgatataaattgtcctttctcaaaacgtgggctt
tgtgagcggcctcactgtttgtacaaacatgccacagaactgcgggatatgtttggtgcc
tcgtataaatcaccgatagttgactttgcaggagtccacaatggctatccgcatgctgcc
tgtggagcacgagttaatgatgagactaaagatgactgcctccaggagctggagcggatc
aacaaggagattgaaactgtaaggcacgaagtggagcaggagcaaaggcgactgtcacgc
taccagactgtacaggcaggcagcagaaacactgagcctaattcctctgttccaaagtct
gagactgcaggtaaaaatacagacagaggttcttgtgaactgtctaaaagcacaaacttt
actaaaacgtactcccgagcaaggaagtacgtggttgacaactcaaaaccaaggactgat
ttggagtacgaccctctgtccaacttctctgctggcttgcggtcttacagctcatcaggt
aaagagcaaaaagtgaaaaacggacaaggtttgaaaagggcaagaaacgctgtaccttgt
gaccaaaagaagccagtcaaatatcaggatcagccacttgatgactcaaatgaagacagc
gtcctgattattgacgttcctcccttgcctgacaaaaagagaaggcgagctcagaaacct
gttgattctcttgctggcaaatccctccaggataaactagaggaattgaaggaggtcaaa
acagcgcctattttacttgattctccactgctgcaccttgcaaaagctgagacatctcca
cctgcatcagcggtagaagaaaatagagtttatagtgattgcggtgttgaaaacgatcaa
gggccatctaatctttatgagaacaaagaatggaaaaatatacccgttgatgggagtgta
attgacttcactgaatgtttagaagacctggcgactgaaagtcagaaaattactcacttt
caggccgctgaaacagtagtggagaaaagtcctgaacctgcaagtcctcctgccgttaca
gacaggcaagatcaaaactggaacaatctggtggtggaaaaggaagaaaacaagtttcag
gttgaattgcctcagtgtgagctgccccatagtgttgagaaaatgaatccactgcagcca
catcatttcccaccaaagaattcacttttttataaagcgccagctgctaactcagactca
ccgtgcaggcaacacaccaagcaagcccagacaacagagcagccagctcagaacagagtt
agtaatcagtggtcttccacaaaatgtgtaccatcagtgctgccacacagccagaaaaca
tcaagcaaaatgccaggacagatgcagggtaaagctacgccacccgagagctacctgggg
ccggcagaaccagcttcaggcagcagccaaggtcaggctcggcacaattcatcagcatcg
agtttgacaaacagagatgaatcgtcatccgcatcagctgggccgcttttggtgaaagcg
gatactgaggagtttataatcattgattccacctctgatgatgaagatgagctcaactat
tcagaagtggagctgtctgacagtgacccaatggaggaatgctacaggatcttcatggag
gcaaacaacgagcaggataagggaaatgaagagcagcccgatgtatctgttggagctatg
gatgtggagaagccggagttaaacatcaaagcccaagcatcgtcaggaaagaagagggtg
gctcatgaagccaaacatacagagcagccggtggctaagagcagacctcagccccaggtg
ctggtccccctacgtggccctgtggtgtcaggattttcctcccagccctctatcacctcc
aagatccagcaggtacagcagagagcctccatgctgactgcttcagttaaaggtagtcag
gcttttgtttcctccacctgtcagaggaagccagagacccagagtgctccttctccttcg
actcaaacccctgaaaacctgcagcctgcgcctgtgcaaaatgcttactacaactacata
cctttgggacctgctgtgatcgaagtgggcaacaacttgcacttgatcctcccagagggc
accttccctctgcctgtcacttccagctccagccaagttacttcagtgctaaccccaatc
agtcaagtgcatatgaacgctgtcgccgttaaacaaacctaccactcgcctgcagttacc
cctgtgcaaagataccgcacaacagcacctgtgctcattcctgcgccggcacgtaaacct
tcactaacctctgcctttgcgttggcacattcaaatccagccgtttccactcctcaagct
gctgtccatgctactgttaagccagtgcctactaaacgtaaattgaagcagcagtgtgag
gccgccaaagacaaagtgccccatgacatccgacagcgatatatcaacatgtttacagag
gagttcctcaaaacaacagccaatgttaacgatgcctttgaaaaggctcttgctgaagag
aggactgtgtataatcgcagtgtgaacaaactcaagtatctgagtgttgcagtgaatgca
ctgaagaggctgaagaaccaaagtgctgttgctgctaaagatgaaaatgacgtcaacagc
caaagattcaaaggcaacattccacttaacctgaagaagtttaaaggaaacgcagatgat
atggcattgtatgaaagtttgaatgactacattttgactgagggaaggctgattgagagc
aactatcctgtccagcacccagagaaacctggttgtgctgttctttttgcggacaataag
aaatgcaacacagaccccctcaagaggatctgctgtcgatgtggggctacgtactctgtg
agtcaaacgggcaaacacacccgcaaggacgagtgtaattaccactatgggaaaggagtt
aagaataaagtgccgggtggagtggagacccgctacagttgctgtgagggagtcatggga
gcacctggatgtcaggtgtttaagttgcatgtccatgattccctcagcctggatgggttt
gtgtcgaccgtccccagacatccctcagatacgagctgtcctggtgtctactccttggat
tgtgaaatgtgttataccattcatggtctggagctgtccagagtgacggttgtcaactct
agtctgcaagtcgtctacgacaccttcgtcagacctaataatgaggtcatcgactataac
accaggttttcaggcatcagtgaggaagatgtgaagggtaaccacacctccctcagagag
gtgcaggagaccttattgagcttcatcagtgccgacaccattctgattggacacggcctg
gaaacagacctctgtgccctgaagttgctccatgggaaggttgtggacacatcagtggtc
ttcccccaccgtctgggcccccctcacaagctgaccctcaacaacctcactgctgaatac
ctcaggaggatcatccaagagagtgtttgtggccacgacactgcagaagatgctgctgcc
tgcatggagcttatgttatggaaggttaaagaagatggaaaactgaaaaaatga
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