Siniperca chuatsi (mandarin fish): 122875984
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Entry
122875984 CDS
T08948
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122875984 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122875984 (smarca2)
03036 Chromosome and associated proteins [BR:
schu03036
]
122875984 (smarca2)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122875984 (smarca2)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122875984 (smarca2)
Chromatin remodeling factors
BAF complex
122875984 (smarca2)
PBAF complex
122875984 (smarca2)
GBAF(ncBAF) complex
122875984 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
122875984
NCBI-ProteinID:
XP_044051681
LinkDB
All DBs
Position
LG5:5293251..5355000
Genome browser
AA seq
1615 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGASPGPGTPNAPHGM
QGQGQSDYSQDSMYPMHKTMEGMNDKTMADAMHFGHMKGVGMRSLHSGMGPPQSPMDQHS
QGYMSPHPSPMGVHEHASSPMSGGGGGGGPTPPHMPPSQSGPMMPMEPQGAMPNMTNMGQ
QGRGPSAFNPVQLQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQPPQQQQQ
QQQQQQQQQQAPSASPYNRPAGMPMAPMGGPQSSPCPTPAMQAHNQSTGPKPWSDGQGGE
NQANAQKHLTPVASGRPSPAPPQASAVPAGPMPGSSVTPQPPGQQVSPMLQMQQKQNRIT
PIQKPQGLDPVGILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQ
RQLRQDVVACMRRDTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQ
EYLNSILQHAKDFKEYHRSVSGKIQKLTRAVATWHTNTEREQKKETERIEKERMRRLMAE
DEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKRRKKKKKKVDGD
GEGTSAIGPDGEPMDESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVA
PRSDSEESGSEFEEEEEEEAAKAETEEKIIDPNGVEVFVTAAKHIIESAKQDVDDEYSVP
TGQTSSQSYYGVAHAVIERVEKQSSLLINGTLKHYQTQGLEWMVSLYNNNLNGILADEMG
LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWVYELDKWAPSVVKIAYKGTPALRR
GLVPQLRSGKFNVLLTTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV
APRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI
LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQKGILLTDGSE
KDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGYPNGIINGHDLYRASGKFE
LLDRILPKLQSTNHRVLLFCQMTSLMTIMEDYFSYRNFQYLRLDGTTKSEDRASLLKKFN
EEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR
LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRVFLQAILEHEEQNECDHSQ
KCEGLLQDIALRPTSSEEDEVPDDETLNQMIARNEDEFELFMRMDMDRRREHARNPKRKP
RLMEEDELPSWIIKDDAEVERLTYEEEEEKLFGRGSRCRRDVDYSDTLTEKQWLRAIEDG
NLEEMEEEIRLKKRKRKRRQDKDSSSRDDGAAKAKKKRGRPPAEKLSPNPPKLTKQMNTI
IDTVINYRDGSGRQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKDRVRNHKYRNVGDLE
KDVTLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKDEESEDDSDEDDDDEDESEA
EAKSVRVKIKLSKEARSHDKGKKRQSRGKAKPVVSDDDSDEDQDDNDQSDKSDDE
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccttcggacacatcaggtggtatgtcccatcctggcccttctccaggggca
ggtctatccccagggcccatcttgggcccaagccctgggccggacccctcaccaggctct
gttcacagtatgatgggagccagtcctggacctggaacacctaacgcacctcatggaatg
cagggccagggacaaagtgattactctcaggacagcatgtatcctatgcacaagaccatg
gagggaatgaatgacaagactatggcagatgcgatgcactttggtcacatgaaaggtgtg
gggatgagatctctgcatagtggtatggggcctccacagagtcctatggaccagcacagc
caaggatacatgtcgccccatccatcccccatgggtgtccatgagcatgcttctagtccc
atgtcaggaggtggaggtggtgggggacccacaccgccccacatgcctccctcccagtca
ggccctatgatgcccatggaaccccagggagccatgcccaacatgactaacatgggccag
cagggacggggaccttctgctttcaatccagtccaactgcagcagctcagggctcagatc
ctggcctataagatcctgggccgtgggcaacccctgcctgaaaacctccaactggctgtt
cagggcaagaggagtctacccacaatgcaacagcagcagccgccgcaacaacaacaacag
cagcagcagcagcagcagcagcagcagcaggcacctagtgctagtccttacaacaggcct
gcaggtatgccaatggcacctatgggtggtcctcagtcaagtccctgccctaccccggcc
atgcaagcacacaatcaaagcacgggacccaagccttggtctgatggtcagggtggtgaa
aatcaagccaacgctcagaagcacctcacccctgttgccagtggacgcccgtcccctgca
ccacctcaggcctcagctgtgccagctgggcccatgccaggcagttcagtgacccctcag
cctcccgggcagcaggtgtcccccatgctccagatgcagcagaaacagaatcgcatcacg
ccaatccagaagccccagggcttggacccagtggggatcctgcaagagagagagtacaga
ttgcaggctcggattgcacatcgaatccaggagctggaaagtttgccaggctctctgccc
cctgacctgaggactaaagccacagtggagctcaaggcactgcgtctactcaacttccag
cggcagctgagacaggacgtggtggcatgtatgaggcgagacacgaccctggagacagcc
ctcaactcgaaggcttacagacgcagcaagcggcagacgctgagggaggcacgcatgacc
gagaagctggagaaacagcagaagctcgagcaggagaagaaacgcagacagaaacatcag
gaatatctcaacagtatccttcagcatgctaaggacttcaaagagtatcaccgctcagtg
tccggtaaaatccagaaactcaccagagctgtcgccacctggcacaccaacacagagcgg
gaacagaagaaggagactgagagaatcgagaaggagaggatgaggagacttatggcagaa
gatgaggaaggctaccgaaaacttattgaccaaaagaaagacaagcgtctggcctacttg
ctgcagcagacagatgaatatgtggccaacctcaccaccctggtgtacgaacacaaagct
gcccaagctgcaaaggagaagaagaggaggaagaagaaaaagaagaaggtggatggagat
ggcgaaggcaccagcgccattggacctgatggagagcccatggatgagagcagccaaatg
agtgagctgccagtcaaagtgattcagacggagactgggaaagttttgcagggaacggat
gctcccaaatccagccagctggaggcctggctcgagatgaaccctgggtatgaagtggcc
ccgcggtcagacagcgaggagagtggctcagagtttgaggaggaggaggaagaggaggcg
gccaaggcagaaacagaggagaagataatcgatcccaatggcgtcgaagtgtttgtgacg
gctgccaagcacatcatcgagtcggccaagcaggatgtggatgatgagtacagtgttcct
actggacaaaccagctcccagtcttattatggtgtggcccatgctgtcattgagagggtg
gagaagcagtcgtcgctgctgatcaacggcacactcaaacattaccagacccagggcctg
gagtggatggtgtccttatacaacaacaatctaaatggcatcctggctgatgaaatgggc
ctcggtaaaaccatccaaaccatcgcccttatcacctacctgatggagcacaagaggatc
aacggcccctttctcatcattgttcctctctcgactttgtctaactgggtctatgaactt
gacaagtgggcaccttctgtggtcaaaattgcttacaagggcacccctgctttgcgccgt
gggcttgtgcctcaactccgcagcgggaagttcaatgtcttgctgaccacctatgaatac
atcatcaaggacaagcaaatactggccaagattcgttggaagtatatgattgtggacgag
ggtcaccgcatgaagaaccaccactgtaagctgacccaggtgttgaacacccactatgtg
gctccccgtcgcctcctcctcaccggtacaccgctgcagaacaagctgcccgaactgtgg
gccctgctcaacttcctcctgcccaccatcttcaagagctgcagcaccttcgagcagtgg
ttcaacgccccgttcgccatgacaggagagagggtcgacctaaatgaggaggagaccatc
ctgattattcggcgtttgcataaagtgctccgccccttcctgctacgcagactgaagaag
gaggtggagtctcagctgccagagaaggtggagtatgtcataaaatgtgacatgtctgct
atacagaaggttttgtaccgccacatgcagaaaggaatcctcctcactgatggctcagag
aaagacaagaagggcaaaggtggagcaaaaaccctgatgaacaccatcatgcagctgaag
aagatctgcaaccatccatacatgttccagcacattgaggaatcttttgctgagcacttg
ggctatccaaacggcatcatcaatgggcatgatctgtatcgagcttctgggaagtttgag
ctcctagatcgcatcctgccgaagctacagtctactaaccacagagtcctgctattctgt
caaatgacctcactcatgacaatcatggaggactacttcagctaccgcaactttcagtat
ctacgtcttgacggaaccacaaagtctgaggaccgagcttcactgctgaagaaatttaat
gaggaaggatctcagtacttcatcttcctgctcagcaccagagccggtggcctcggcctc
aacctgcaggctgccgacactgtggtcatctttgacagtgactggaacccacaccaggac
cttcaggctcaggaccgggctcaccgaatcggtcagcagaatgaggtgcgtgtgcttcgt
ctctgcaccgtcaacagtgtggaggagaaaatcttggcagctgccaaatacaaactcaac
gtggatcagaaggtcatccaggcaggcatgttcgaccagaagtcctcgagccacgagcgc
cgtgtcttcctccaggccattttagagcatgaggagcagaatgagtgcgatcactcacaa
aaatgtgaaggattgcttcaggacatcgcgcttaggcctacttcatcagaagaagatgaa
gtgcctgatgatgaaacccttaaccagatgatagcccgcaatgaagatgaatttgagctc
ttcatgcgcatggacatggaccgacgccgggagcacgccaggaacccaaagcgtaagcct
cgtctaatggaggaggacgagttgccttcttggatcatcaaagacgacgctgaggtagaa
cggctcacatatgaggaggaggaggaaaagctgttcggccgaggatcacgctgtcgtcgg
gatgtggactacagtgacacgctgactgaaaaacagtggctacgggccattgaggatgga
aacctggaagagatggaggaggagatccggctgaaaaagcgcaaacgcaagagacgtcag
gacaaggactcgtcgagcagagatgacggggccgccaaggccaagaagaaacgtggacgt
ccaccagctgagaaactctcccccaatccccccaaactcaccaagcaaatgaacaccatc
atcgatacagtcatcaactacagagatgggtcaggaagacaactaagtgaggtctttgtc
cagttaccatccaggaaggagctcccagaatattatgagctaatcagaaaacctgtggac
ttcaaaaagatcaaggatcgtgtaagaaaccataaatacaggaatgtgggtgacctggag
aaggatgtgacgctgctttgtcacaatgcccagacctttaacctggagggatcccagata
tacgaggactccattgtccttcagtctgtgtttaagagtgccaggcagaagattgccaag
gatgaagagagtgaagatgacagcgatgaggatgatgatgacgaggatgagtcagaggca
gaggccaagtcggtgcgtgttaagatcaagctgagtaaggaggcacgcagccatgacaaa
ggcaagaagaggcaaagccgagggaaggccaagcctgtggtcagcgacgacgacagcgac
gaagaccaggatgacaatgatcagtcagacaagagcgatgatgagtga
DBGET
integrated database retrieval system
