Siniperca chuatsi (mandarin fish): 122876021
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Entry
122876021 CDS
T08948
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
schu03009
]
122876021 (ddx21)
03036 Chromosome and associated proteins [BR:
schu03036
]
122876021 (ddx21)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122876021 (ddx21)
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
Pre-60S particles
Helicases
122876021 (ddx21)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122876021 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
122876021
NCBI-ProteinID:
XP_044051763
LinkDB
All DBs
Position
LG1:complement(21032753..21042105)
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AA seq
755 aa
AA seq
DB search
MPTKIIFETEDQAMEEDVDTVAEAKPLKNKTKEGKKLKKKKQLEDQEEQVDPDCEPPAPK
KKKKKDKLAADQVNGHIDEATDINGNNNGVETPKQKIKKNTEGDTEKRKKQKKAIAEEAT
NGHSTPNTPIQTPIQTPSQSSEDSASDSEKETEETPEQREGAFSNFRISQVTIDKLKARG
VSHLFDIQVKTFNPVYDGEDVIAQARTGTGKTFSFAIPLVEKLQKDSLVLTRGRAPKVLV
LTPTRELAIQVAKDFKDIIKRLAITCFYGGSSYNPQIDAIRNGIDILVGTPGRIKDHIQN
HKLDLSKVKHVVLDEVDQMLDMGFAEQVEEILASSYKKDSDSNPQTLLFSATCPPWVYEV
AKKYMRPECKHVDLIGKKTQRAATTVEHLAIACHWSQRAAVIGDVIQVYSGSHGRTILFC
ETKKEANELSMNASIKQSAQSLHGDIPQKQRELTLKGFRKGAFEVLVATNVAARGLDIPE
VDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVENKAGITFKRVGV
PTANDIIKSSSKDAVRFLDSVPVTAIGYFRASAEKLIEERGAVDALAAALAHISGATSLE
QRSLLNSDAGYTTMQLVCSQEMHNLGYAWRTIKEQLGDEIENHIRGMTFLKGRTGVCFDV
PADKVKEMQDNWKDGRRWQLTVAAELPELEEKQFNNRGDRGFGSGNRGDRGGGFRGGRGR
GFGGNGGRGNGFRNGGGGYGNNRGHKRNFSQAFDY
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgccgacaaaaatcatctttgaaaccgaagatcaggccatggaggaagatgtggacact
gtcgcggaggctaaaccccttaagaacaagaccaaggagggcaagaaactgaagaagaag
aagcagctggaggaccaggaagagcaggtggacccagactgtgaacctccagcaccaaag
aagaaaaagaaaaaagacaagctggcagcggaccaagtgaacggccacatagatgaggcc
acagacatcaatggcaacaataatggtgttgaaacaccaaagcagaagattaagaagaac
actgaaggagacacagagaaaagaaagaagcaaaagaaggcaatcgcagaggaagcaacc
aacggacattccaccccaaacacccccattcagacgcccatccagacaccgtcccagtca
agtgaagactcagctagcgacagtgaaaaagaaacggaggagacaccagagcagagggaa
ggggccttctccaacttcaggatctcccaagtcaccatcgataaactaaaagcccgggga
gtctctcacctgtttgacattcaggtgaagacatttaatcctgtatatgatggagaggac
gtaattgcccaagcccgaacaggaacaggaaagactttctcctttgccatccctttggtg
gagaagctccagaaggattcattggtgctcaccagaggccgggctcccaaggtcctggtg
ttaactccaaccagagagttagctatccaggtcgctaaggacttcaaagacattatcaag
agactggctatcacctgtttctatggaggcagctcctacaacccacagatcgatgctatc
cgtaatggtatcgatattttggttggaacacctggtcgcatcaaagaccacatccagaac
cataaactcgacctttctaaagtgaaacatgttgttctggatgaagtagaccaaatgttg
gacatgggatttgcagaacaggttgaagagattttggcttcatcatataagaaagactct
gactccaacccacagactcttctgttttcggccacctgccccccctgggtctacgaggtg
gctaagaaatacatgagaccggagtgcaaacatgttgacctgattggcaagaaaacacag
agagctgcaacaactgtagaacatctggccatagcttgccactggtcacagcgtgcagcc
gtgataggcgatgtgatccaggtttacagcggcagccacggcagaaccatcttgttctgt
gagacaaagaaagaggccaacgaactttccatgaatgcatccatcaaacagagtgcccag
tccctccatggtgatattcctcagaaacagagagagttgacgctgaagggcttcaggaag
ggggcttttgaggttctcgttgccaccaacgttgcagcccgtggattagacatccctgaa
gtcgacctggtggtccagtgttctccacccaaggatgtggagtcatacatccatcgttcg
ggacgtacgggccgagcaggcaggactggagtctgcatctgtttctaccagaggaaagaa
gaggaccagctgcgctacgtagaaaacaaagcaggtatcacattcaaacgagttggcgtt
cccactgccaatgatatcatcaagtcatcaagcaaggatgctgtcaggtttctggactct
gttccagtcacagctatcgggtacttcagagcgtcagctgagaaactgatcgaggaaaga
ggagcagttgatgcgctagctgcagccctggcccatatttctggagccacaagtctagag
cagaggtcactgctcaactctgatgctggttacaccactatgcagttggtgtgttctcag
gagatgcataatctgggttacgcctggagaaccatcaaagaacagcttggagacgagatt
gagaaccacattcgtggaatgaccttcctcaaaggcagaacaggagtttgttttgatgtc
ccagctgacaaagtcaaggagatgcaggataactggaaggacggtcgccgttggcaactg
actgtagccgcagagctcccagagctggaggagaagcagttcaataaccgtggcgacaga
ggctttggaagcggtaaccgtggtgacagaggaggagggttcagaggtggaagggggcgg
ggtttcgggggaaacggtggccgtggtaacgggttccggaatggcggtggtggctatggc
aacaacagaggacacaaacgcaacttcagccaagcttttgattattga
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