Siniperca chuatsi (mandarin fish): 122876040
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Entry
122876040 CDS
T08948
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122876040 (vps13a)
Membrane trafficking [BR:
schu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
122876040 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
122876040
NCBI-ProteinID:
XP_044051813
LinkDB
All DBs
Position
LG5:19709311..19757625
Genome browser
AA seq
3280 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLKNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQENPNLEKQDTFIEKLVTQVIKNVQVKISNIHIRYEDDVTNPNCPLSFGVSLK
NLSLQTADKYWNPSLLDVNSRLFFKLVQLDSLFAYWNVNSILFSNHNADEALRCLQSSME
IHNSLPVSHDFIFRPISADAKLRMNPRSDVDFSSPKVDLMVNLNEVAIELNRPQYISILE
LLGSVDLMSRNLPYRKYRPVVNVHKNACIWWKYMITSILEVDVKPRLHMWSWQHIRRHRQ
MVKCYRKLYKTKITSKKPSEELLKALEELEKTLDIFNITLARQQAEVETSKAGLCIYRPG
MKMEEEESQGWLSWMWNWGGETDTQTKDVKTGGFDELLTPAEKAKLYTAIGYSDTAANPN
LPKNFVNMKVNFHMERLSVSIKDNKDKNEIIRLTVGELQSTLTQRPGAQAIKLTAKLSLF
EVTGLASNRPAPTLLSSKKAATGAGTPLLCMLFETNPLDQSADQRLHVESQPLEIIYDAI
TVNSMSVFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLMASYV
IIPQTGFYNGTQNILLLDLGHFKMSSQSKKHLPQLSACSSNIEDIMSRAYDSFDIQLSSL
QFLYSKPDGDWKMARKQKQSPLHILKPVDLKVVFSRAMVVKDSRMAKYKMSGELPLLSLR
ISDDKLRCVLELVESIPLPESRPAAHGTAPSSTSKPKQSFTPQLTPRRPLNLADQRSSLM
FESCETISITSLGSEEDLFYDAPSSPVSDLAFFSDNPMPLRYADLNRKKGLLKEDLQKNM
TDFSMTFEISEFSVQLCRLSGGQEITVLHLDIEGLGTELKLRTFDMTSYTYLREICLKCP
EYMDSEEKQVQLITTLDNTEVDLLTLEYIKADKTGPEFKSQHNNTEQLIKVTFSSLDVHL
HTEALLNTMNFLTNLLPPSTKKEGGHEELPTIPEEDEAEAEKEGEKKEEATVTRKKSSKS
SKFADVVNLHIRADLRCLKVFIRGQKARISEISIEGLVSEVLMRKKEMEVLANLKSIVIL
DCDKDAFYKKAVSIADKEVFAFRMVNYTNATEGDAYLDMSKVDTSVTLTVGCIQVIFLNK
FVSSILAFINNFQEAKEALAEATVQAAEKAASGVKELAERSTRIALNIHFNAPVIFLPQS
SSSSNVIVADLGLLSVKNRFAKQPFKSDATIPPVVDIMTVRLTDLKMYRTTYRNEGFQGE
TQLLKPVSLDLEIQRNLSSNWYHSIPDIEITAHLKPMVLILSQDDMTVVLRTLSENLSEK
SDAVPPPARPPTTDPSSDSVSNKESQGSGTTGPASSNTVVTAAVVETQKNSKLKSTLKLD
FKFDSMTLILYSPNGNEIQLLDSHDVQLKLAEFTLGTISTSVHMFSDSSMKASVRLATCL
LDDKRPRIKMVTPRMMAMRPGAEQNTMVEVNYRQGRDGTTLDTVVQDVYLCASMEFLLTV
ADIFLKATQQGFAQVPQPKTSTGAGDKKNINSSVTSKEYTAAPAVVSKTDMNVLVRNPEI
VFVADLTRADAPALVMTTQCELVMKSGAGGSQMTAVIKDLKVVACPFLTEKRRNNVTTVL
QPCQVFFQSTQSPTSPQAMEVAINALTLKVSPIIINTVITIQSALTPTAETPEELDSPVP
MDLWEKQGWKELKLWFLEEEGDEDTASLAPLIPQGESLQVTIKSICLTLEAGVGHRTMPM
LLAKSSFHGDVTNWSTLINLHSELNLEVHYYNEMMGVWEPLLEPLEDETRDGFRPWRLEL
KMKKKPVKYTVSLADEVDYNVPDYKTVIAISSKDQLNITLSKCGLTMLSNLGTAFAEAAK
QTADSFQKDEAPFVVQNRLGLPVSVRHSEMFRPIDQQSTDRTVKLQDGKTLEMDYSTTTD
SDQFSAMISLSGKDYYIQPTPMGHTSASVIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSV
EGSKYIKIRSPFQIINHFSIPFKVFEGSTCLGTALPTEEFCVPLDSYRSELSLQPITEDD
TDNQGEQFECSEGFSYEDVRNQQPDTRLQQTCRRRGDQGGVLMVNIVPVKDAVTFKHTGG
VGENFDVPFVLHLWPSILLRNLLPYPISYKLKNSGVFAPEATLNPGHSAQLHSAVINQSS
LSLRLLNYLAQDWSSEYSLLSDQEEITFTVFQSLREDDENDGEGTERKRAELDIAVHVKY
DLGQTVVAIHSPYWMMNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLKNNKVRLM
ISESELSDDFSLDTVGSHGDVKCKGRYKDYLVGVKIEPSSFSLTRIVSFVPFYMLVNRTK
HSVFICEEGQDNWTEAQPEQSAIPFWPENDTKRLKIKVEGCLLPPRTIDFTRPENCLLLH
LDNSVGGIIVDVNLSEHSATIRFSEYHDGAAPFLMINHTKDQTLQFYQSARTESTWVADE
LLNLSFSMEEDSSQKEAEQEELQAGKAVHYTWTEPTGSRELCWKCGSYSGKLKSEEDLRE
NMNNEGKLFVISFYEGLQRVVLFTEEKRIYKLLCESEKAQLAEQEIILSLRNMGVSLINN
SSSQEVSFIGITSSDVVWELKPKKKNRWKTLSTKEAEMLENSFKEYTESGPVDNAIVDLE
NNYQVSFTPNGMDMRMLQPCDAPLRRHFLPGVKVEYSVSPRQRAYRVQIHRIQIQNQLPG
AIFPFVFYPVKLPKSITMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLG
FLYAILDMFTPENASIMSSEQEVELFEKDIEYIKTELNHVSAADTSPISLYEYFHISPIK
LHLSFSLSTGGEDGLKEKRDTELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFC
TTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGP
EEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEEYQQKRREAMNKQPSG
LREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIID
MASSTFQGIKRAAETSQDIESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYR
YFAHAKVNDSDFLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKDPMIVENRRLRIEAKE
RVKSVFHAKEFGKIINFKTPEIAKWVLAKLEDARESLPKY
NT seq
9843 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcttggtggtagatgtcctcaatcgatttttaggggactacgttgtc
aaccttgacagctcacagctaaagcttggcatatggggaggtgacgctgttcttaaaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtgagagccggt
catataggacggctggagctaaagattccatggaagaacctctacacccagtcagtcgag
gcaacactggatggggtctatctgctcatagtccccacagcaagtataaagtatgatgca
gaaaaggaggagaagcaactacaggaagctcgtcagagggaactacagcggatagaggag
acaaagctgaaggctgccgagcaagagaaccctaatctggaaaagcaggacacctttatc
gagaagcttgtcactcaggtcatcaaaaacgtgcaggtcaagatctctaacatccacata
cgctatgaagatgatgtcactaatccaaactgtcctttgtcatttggagtgtcacttaaa
aacctcagccttcagacagctgacaagtactggaatcccagtcttttggatgtgaattcc
cggcttttcttcaagttggttcaactagacagcttgtttgcctactggaatgtcaactca
atacttttctccaatcacaatgcagatgaggccttgcgatgtctccagagcagcatggaa
atccacaactctcttcctgtcagccatgacttcatttttcgtcccatctcagcagacgct
aaactacggatgaatcccaggtcagatgtggacttctcctctcctaaagtggacctaatg
gtcaatctcaacgaggtggccattgaactcaacaggccccagtacattagcatcttggag
ctgctgggctcagtggatttgatgtcacggaacctgccatacaggaagtacagacctgtg
gtcaacgttcacaagaatgcctgtatatggtggaagtacatgatcactagcatcctggag
gtggatgtgaagcctcgactccacatgtggtcatggcagcacattcgccgtcaccgacag
atggtaaaatgctaccgaaagctctacaagaccaaaatcaccagcaagaaacccagcgag
gagctgctcaaggcactggaggagcttgagaagaccttggatatttttaacatcacgttg
gccagacagcaggctgaggtagagacaagcaaggcaggcctttgtatttaccgtccaggg
atgaagatggaggaagaggagtctcagggttggctcagctggatgtggaattggggagga
gagactgatacgcaaacaaaagatgtcaagactggaggttttgatgagctgttaacccct
gctgagaaagccaaactctacactgccattggatacagtgataccgctgctaatcccaac
ctgccaaagaattttgtcaacatgaaggtcaatttccacatggagaggctgtctgtgtcc
attaaagacaacaaggacaaaaatgagatcatcaggctgactgtaggagagctccagtcc
acactcacacagagacctggagcacaagccatcaaactcacagccaagcttagtttgttc
gaagtcacaggcttggccagtaaccggcctgcaccaactctgctgtcatcaaagaaggca
gccacaggggcagggaccccgctcctttgcatgctctttgagacaaatccgctggatcag
agtgctgaccaacgacttcatgtggaatcacaacccttggaaatcatctatgatgctata
acagtgaacagcatgtcagtgttcttcatgcctcctgacgacctgcagctggatgagctc
accaacgcaaccctcatgaaactggagcagtttagagaccgcacagccactggtctaatg
tatgtgatcgaaacacagaaagttctcgacctgaaggtgaacctgatggcctcctatgtc
atcattccacaaacgggcttttacaatggcactcagaacatcctattgttggatcttggg
catttcaagatgtctagtcaaagcaagaagcatctgcctcagctgtcagcgtgctccagc
aacatcgaagacatcatgtccagagcatacgacagctttgacatacagcttagcagcctg
cagttcctttatagcaaaccagatggcgactggaaaatggcccgtaagcagaaacagtca
ccactccacatcctaaagccagtggatctaaaagttgttttcagcagggcaatggtcgtc
aaagactcccgcatggcaaagtataagatgtctggagagcttcctctgctgtctcttcgt
atttctgatgataaacttagatgtgttctggagctggtagaaagtatcccactgcctgag
agcagacctgctgcacacggcactgctccatcctccacttcaaagccaaagcagtcattc
accccacagctcactcccagacgacctctgaacttagctgaccagcgctcctctctcatg
ttcgagtcatgtgagaccatcagcatcacctcattggggtcagaggaagatttgttctat
gatgctcccagctctcccgtcagtgatctagccttcttctcagataaccccatgccgctg
cgctacgcagacttaaacagaaaaaaaggtctgctcaaggaagaccttcagaagaacatg
actgacttcagcatgacgtttgaaatcagtgagttttctgttcagttgtgtcgtctgtct
ggaggtcaggagatcacagtgctccacttggacatagagggtctgggcactgaactgaaa
ctacgaacctttgacatgacatcttacacctacctacgagagatctgcctcaagtgccct
gaatacatggattctgaagagaagcaagttcagctgatcaccactctagacaacacagag
gttgacctgctcaccctggagtatattaaagctgataagactggccctgagttcaagtct
cagcacaacaatacagagcagctcatcaaggtgaccttctcatccctggatgtccatctc
catacagaggctctcctcaacaccatgaacttcctcaccaacctccttcctccatccact
aagaaggagggagggcatgaggagctccccaccatccctgaggaggatgaggcagaggca
gagaaggagggagagaagaaggaggaagctactgtaaccaggaaaaaaagttcaaagagt
tcaaagtttgcagatgtggttaatctgcatatcagagctgatctccgctgtctgaaggtt
ttcattcgaggacagaaagccaggatctctgagattagtattgaaggtttggtttctgaa
gttctgatgaggaaaaaggagatggaggttctggccaacctgaagagcattgtgatccta
gactgcgacaaagatgcgttttacaagaaggctgtgtctatagcagataaggaagttttt
gctttccgcatggtaaactatacaaatgccacagaaggagacgcctatctggacatgtct
aaagttgacacctctgtcacactgactgtgggatgcatccaggtcatcttcctcaacaag
tttgtctcctccatactggctttcatcaataacttccaggaggctaaagaggccctggct
gaggcgacagtccaggctgcagaaaaggcagcgtcaggtgtgaaggagctggcagagcgg
agcactcggatcgctctgaacatccacttcaatgcacctgtcatcttcctaccccagtct
tcctcttcctccaatgtcattgtagctgaccttggtctgttgtctgtcaagaaccgtttt
gccaaacagccctttaaaagtgatgctacgatcccgcctgttgtggatataatgactgtg
agactgactgacctcaagatgtacaggaccacatacagaaatgaaggttttcaaggagag
acccagctgctgaagccggtcagcctggacttggaaatccagagaaatctttcatccaac
tggtaccacagcatacctgacatagagatcactgctcatcttaagcctatggttttgatc
ctcagccaggatgacatgacagtggtcctgaggactctgagtgagaacctgtcagagaag
tctgatgctgttccacctccagctcgtccgcccactactgacccctcctctgactctgta
tctaacaaagagtcacagggctctggaaccactggaccagccagcagtaacacagtagtg
acggctgctgttgtggagacccagaaaaatagcaagctgaagagcaccctcaagttagac
ttcaagttcgactcaatgacgctgatcttgtatagccctaatgggaatgagatacagctg
ttggattcacatgatgtgcagctgaagctggcagagtttactctgggcaccatctccaca
tctgtccacatgttctcagacagttctatgaaggcctcagtccgactggctacctgcctt
ctagatgacaagagacccagaatcaagatggtcacaccaagaatgatggcaatgcgtcct
ggtgcagaacagaacacgatggtggaggtgaactaccgtcagggccgtgatggcaccact
ttggacacagtggtgcaggatgtgtacctgtgtgccagcatggagttcctgctcacggtg
gcagatatctttctcaaggccacccagcagggttttgctcaagtgccacaacccaagacc
agtactggagcgggagataaaaagaacattaactcctccgtcacatctaaagagtacact
gcagctccagccgtggtgtcaaagacagatatgaatgttctggtgcgtaacccggagatt
gtgtttgtggctgacctgacgcgtgctgacgccccagccctggtgatgaccacgcagtgt
gaactagtaatgaaaagtggtgcagggggatcacagatgactgctgttatcaaggacctc
aaggtagtggcatgtcccttcttgacagagaagaggagaaacaatgtgaccacagtgctg
cagccgtgtcaggtgttcttccagagtactcaatccccaacctctcctcaggctatggag
gttgctatcaatgctctcacactgaaggtatctccaatcatcatcaacacagtgatcacc
atccagtcggcactgactcccacagcagagacccccgaggagctggatagtcctgttccc
atggacctgtgggagaaacagggctggaaggagctcaaactctggttcctagaagaggag
ggggatgaagacacagcgtcactggccccactgataccacaaggagagtcattacaggtg
accatcaaatcgatctgtctgactctggaggccggagtgggacaccgcactatgcccatg
cttctggccaagtcctccttccatggagatgtcacaaactggtctacacttattaactta
cacagcgagctcaacctggaggttcattattacaatgagatgatgggagtgtgggaaccg
ctgctggagcctttagaagatgagacaagagacggtttcagaccatggagactggaactg
aagatgaagaagaagccagtgaagtacacagtcagtttggcagatgaagtggattacaac
gtcccagactataagacggtcatcgccatcagcagtaaggaccagctcaacatcaccctc
tccaaatgtggactgaccatgctgagtaacctgggcacagcatttgcagaggctgccaaa
cagacagctgacagcttccagaaggatgaagccccgtttgtagtgcaaaaccgcctgggc
ctgccagtgtctgtccgccacagtgagatgtttcgtcccattgaccagcagagcaccgac
cgcactgtgaagctgcaggatgggaaaaccctcgagatggactattcaaccacaacagac
tccgaccagttctcagccatgatctccttgagtgggaaggactactacatacagcctact
ccaatgggccacacctcagccagtgtgatccccttaatcaaggtgggcagaggaatgtac
agtgtaatgcacaaagactcaggggtcactcgtttcctggtttgtcagatttactctgtg
gagggcagcaagtacatcaagatccgctctcctttccagatcatcaatcatttctcaatc
ccattcaaagtttttgaaggatcaacatgtcttggtacagctctccctactgaagagttc
tgtgtgcctctggactcatataggtctgagctgagccttcagccgataacagaggacgat
actgacaatcagggtgagcagtttgagtgctcagagggcttcagttacgaagacgtcaga
aaccagcagcccgacacacgcctccagcagacctgtcgtcgccgtggagatcagggtggt
gtgctgatggtcaacattgtgccagtaaaagatgctgtgacattcaaacacactggaggt
gttggggagaactttgatgtgccctttgtgcttcatctatggccttccatcctgctgcgc
aacctgctgccttatcccatctcctataaactaaagaacagtggagtctttgcccctgag
gccactctgaacccaggccactctgcacagcttcacagtgcagtcatcaaccaatccagt
ctcagtctccgcctgttgaactacttggctcaggactggtcttctgagtacagtctcctc
agtgaccaggaagagatcaccttcacagtgttccagtctctacgagaagatgatgaaaac
gatggtgaagggacagagaggaagagggctgagttggatatagcagtgcatgttaaatat
gacctgggacaaacagtggttgctatccactcaccatattggatgatgaacaagacaggc
aggttgctgcagtacaaggctgatgatatccaccgtaaacaccccctggactacgacatg
cccctgctcttttccttcaagcctcgttacttcctgaaaaacaataaggtccgtcttatg
atctcagagagtgaactctccgatgatttctccctggacacagttggtagccatggagat
gtcaaatgtaaaggccgatacaaagattacctggttggtgtgaagattgaaccgagcagt
ttcagtctgacccgcatcgtgagcttcgtgccattttacatgcttgtcaacagaaccaag
cacagcgtcttcatatgtgaagaggggcaggacaactggactgaggctcagccagaacag
tcagccattcccttctggcctgagaacgacaccaagcggctaaagatcaaagtagaaggt
tgtttattgcctcctcggactattgacttcactcgaccagagaactgcctattgctgcat
ctggacaactctgtgggtgggatcattgtagatgtgaacctgtcagagcactcagccaca
atcagattctctgagtaccatgacggtgcggcccctttcctcatgatcaaccacacaaaa
gaccagacactgcagttctatcagagcgcccggacagaatccacgtgggtggctgacgag
ctgctcaacctctccttctcaatggaggaggacagctctcagaaggaggcggaacaggag
gagctgcaggctgggaaagctgtgcactacacctggactgaacccactgggtcccgagag
ctttgctggaagtgtggttcttacagtgggaagctgaagagtgaggaggacctgcgtgag
aacatgaacaatgagggaaaactgtttgtgatctccttttatgaaggtctccagcgcgtt
gtgctgttcactgaggagaaacgtatctacaagctgctctgtgagagcgagaaggcgcag
ctggctgaacaggaaatcattttgtcactacggaacatgggcgtatctctgatcaacaac
agcagcagccaggaggtctcctttattggtatcacaagttctgatgtggtgtgggagtta
aagccgaagaagaagaatcggtggaagactctcagcactaaagaagctgagatgctggag
aacagcttcaaagagtacactgaatctggacccgtggacaacgccatcgttgacctggaa
aacaactaccaggtgtcctttactcctaatggcatggatatgcggatgctgcagccgtgt
gatgctcctctcaggaggcacttcttgcctggggtgaaggtggagtatagcgtctcacct
cgacagagagcataccgtgtccaaatccaccgcattcagatccagaatcagctgccagga
gccatcttcccctttgttttttaccctgtaaaactgcctaaatctatcactatggactca
gaacccaaacctctaactgatatcagcattgttaccagagcagcagggcactctgatatc
tctcgcatcaagtacttcaaggtgttgattcaagagatggatctgaagctcgatctgggc
ttcctgtatgccatcctggacatgttcacacctgagaacgccagcatcatgagctcagaa
caggaggttgaactgtttgagaaggacatagagtacataaagacagaactaaaccatgtc
tctgctgctgacacctctcctatcagtctctatgagtacttccacatttcccccatcaag
ctgcacctgagtttctctctgagtacgggaggagaagacggtctgaaggagaagagagat
acagaactcattcctgtccagtccctcaacctgctcctgaagagtatcggcgccacgctc
actgacgtgcaggatgttgtcttcaagctggccttctttgagttgaccttccagttttgt
accacccagcagttacaatgggaggtcattagacattattccaagcaggctattaaacag
atgtatgtgctggtgctgggcctggatgtacttggaaatccttttggactgataagagga
ctgtcggagggagtggaagccttcttctatgagccttatcagggagccatccaggggcct
gaggagtttgttgaaggaatggctcttggggtgaaggctctggtgggaggagctgtaggg
ggtatagcgggcgcggcctccaggatcacaggtgccatggcaaagggtgttgctgccata
acgatggatgaggaataccagcagaagagacgagaggctatgaacaaacaacccagtggc
ctgagagaggggctgaccaggggtggaaagggattagtgtctggttttgtcagtgggatc
acagggattgttaccaaacctattaaaggagcccagaaggagggtgcagcaggctttttt
aaaggtgttgggaaaggtcttgttggtgcagtagccagacctacaggaggcataattgac
atggccagcagtactttccaagggatcaagagggcagcagagacttcacaagatattgaa
tctctgcgccctcctcgcttcatccacgaggatggtgtcatacgaccatataaggagagg
gagggcatcggcagtcaaatgcttcagaaaattgagaacggacgttttgccaagtacaga
tactttgctcatgccaaggtcaatgactcggacttcctcatgatcaccaagaggggaata
ttttttgtgaccaaaggcacatttggccagctgacctgtgaatggcagtatctgtttgaa
gagttcaccaaggatccaatgattgtagagaaccgcagacttcgcattgaggctaaggag
agagtaaagtccgtcttccatgccaaggagtttgggaagatcataaacttcaaaactcct
gagatagccaagtgggttcttgccaaattggaagatgcaagagagagtttacccaaatac
taa
DBGET
integrated database retrieval system
