Siniperca chuatsi (mandarin fish): 122876228
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Entry
122876228 CDS
T08948
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122876228 (gapvd1)
Membrane trafficking [BR:
schu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122876228 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
122876228
NCBI-ProteinID:
XP_044052206
LinkDB
All DBs
Position
LG5:complement(12671628..12703245)
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AA seq
1493 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNSDVLKTAERLYRAAWIAKQQRINLDRLIL
TSAEASPAECCQHAKMLEDTQFVDGYKTLGFQETIYGEFLARMRENPRLVASCLVAGERL
SQEHTQGVIHAVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKVTERLTPAQQERFGEKGSE
GYKQRVQAAVEANEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDADPR
RKSSLSKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTAVYISHNQLLVLVDFVR
SVMAGDHLREEEHMALETLLANVPRSRTVKSNSLELTPSNTPQLSPATTPANKKNRLPIG
QHLAAITSWDPTTTTLSHIPLVTPFADYGFSLSAAARSRSRTNIAQEGEAEASSQESLQE
LMPEEVLVISLGTGPQTVPGMMSENEVLNLQMADGAQGDGHADDTKLHGKPDKTLRFSLC
SDNLEGISEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDD
KLRKFEIRDMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENMLGSL
LCLPGSGSVLLDPYGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGVGSTSD
DTEVREVSSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEESVH
GAHHLTSPPSQTDSLLAMFDPLSSGEGSSTGTIVRPKVHYARPPHPPPDPPIPEASALGP
ETRHSLFTPHYLAQAELEHTKQRHSFPDRLVRSRSSDIVCPGRRPTSDPGLNRRVAVEER
DPAGAFALGPSSSPSKDSLKGEAEDRKDSDDEKSDRNRPWWKKRFVSAIPKVLYWTAESD
VPAPIAAFRKRDKQEKDDVTQERIPQDDPLPRHSSQAQAAEDILDKYRNIKRTSPSDGAT
GGASYDGTGDLCVEDSVHDSPREDTLQNISTDDLPDSASQTAQQHDSKFSFSDAKKKLRL
ALCSADSVALPIMAPATTRNGLPDHMDSEENEIVCFLKIQLAEAINLQDKNQMAQIQETT
RCVSRFDSRTCRKLLAAIAEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRVLRDKEVA
NRYFTTVCVRLLLEHMEAKMLDFIKAFQGCTAADDKTAAVEDFLSYLYGAMARDAIWQYA
SEDQLQDAQMAIERSVMNRIFKLAFYPNQDGDSLRDQLFHEHIQRLSKVVTANHKALQVP
EVYLKEAPWPSAQSEIRTINAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPV
LVFVLIRANPPCLLSTVQYINNFYASRLSGEECYWWMQFTAALEFIKTIDDRK
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctgaagcaggagcggctgtacgtg
gcatccgagaagcagctgatccagaggctcaacagtgatgtgctgaagacagctgagagg
ctgtaccgggctgcatggatcgccaagcagcagaggatcaacctcgatcgtctcattctc
accagtgcggaggcgtctccggctgaatgctgccaacatgccaaaatgttggaagacact
cagttcgtcgacggctacaagactctgggcttccaggagacaatctatggcgagttcttg
gccaggatgagggagaaccccagactggtggcgtcctgcctggtcgcaggagagaggctg
agccaggagcacacccagggggtcatccatgcagtcttcacctcactttatggcaactgt
atcatgcaggaggatgagagctacctgctacaggtgttgcgatacctgatagagtttgag
ctgaaggagagtgacaaccctcgccgcctactgcgacggggaacctgtgccttcagcatc
cttttcaagctcttctccgagggcctgtactcagccaagctcttcctcaccgccaccctc
catgaacccattatgcagctgctggtggaagatgaagaccacctggagactgacccagcg
aaggtgacggagcgcctaactccggcccagcaggaacgcttcggagagaagggctctgag
ggctacaaacaaagggtgcaggcagctgtggaggccaatgaagccaagctggtagctctg
gtcaacaagtttattggttacctgaagcagaacacctactgctttccccacagtctgcgc
tggattgtgtcgcagatgtacaagactttgtcatgtgtggagcgtcttgaggtgggcgag
gtgcgcaccatgtgtacggacctactgctgacctgcttcatctgcccagctatagttaac
ccagagcagtatggtatcatctcagacgcccccatcaatgaagtggcccgcttcaatcta
atgcaggtggggcagcttttgcagcagttagccatggctgatgatgatgcagacccaagg
aggaaaagcagtttgtccaaatttgataagagttgtgtagctgcctttctggatgtggtg
attggaggaagagcagtcgagaccccacccatgtcctcaatgaacctcctcgaaggcctc
agtaggactgcggtctatatttcacataatcagctgctcgtgctggtggactttgtgcgg
agtgtgatggcaggggaccaccttcgggaggaggagcacatggctctggagaccctgctt
gccaacgtgccccggtctcgaactgtaaagagcaacagtctggagctcactccctccaac
accccgcagctctccccagctaccactcctgccaacaagaagaacaggctacccatagga
caacacttagccgctataacatcctgggaccccacaaccaccactctgtctcacattcca
ttagtaaccccttttgcggattatggcttttcattatcagcagctgctcgtagccgcagc
cgtaccaacatagcccaggagggggaggcagaggccagctcccaagaatccctacaggag
ctgatgccagaggaggtgctggtgatttcactcggaactggtccccagactgtccctggg
atgatgtcagagaatgaggttttgaacctgcagatggctgatggggcccagggggacggc
catgctgatgatactaagctgcatggtaaaccagacaaaaccctgcgcttctccctctgt
agtgacaacttggaaggcatctcagagggtccatccaatcgttctaactctgtgtcatct
ctggacctggagggagagtctgtttctgagctgggagctggaccatccgggagcaacggg
gtggaggctctacagcttttggagcatgaacaggccaccactcaggacaacctggatgat
aaactgcgcaagtttgagatcagagacatgatgggtctgacagatgatcgggacatctct
gagacggtcagcgaaacctggagcactgatgtgcttggcagtgactttgaccccaacatg
gatgaagatcggctgcaggagatagcaggggcagctgcagaaaacatgctcggcagcctg
ctgtgtcttcctggctcgggttcagtattgctggacccctatggctccaccatctcagag
accacaagtgaggcctggagcgtggaggtccttcccagtgactcagaagccccggacctg
aaacaggaggagcgtctgcaggagctggagagctgctcaggggttggcagtacctcagat
gacaccgaggtcagagaggtcagctcgagacctagcacaccaggcctcagtgttgtctca
ggtatcagtgcaacctcagaagacatccccaacaagatcgaggacctgcggtcagagtgc
agttcagacttcggaggaaaggactctgtgaccagtccagatggggaggagtcagtccac
ggagcacatcatctgacatctccaccctcacagaccgattccttactggccatgttcgat
cccctctcctccggtgaaggctcctccactggaacaatagtgaggcctaaagttcactac
gccaggccccctcaccctcccccagatcctcccatccctgaagccagtgccctggggcca
gagacgcgccactctctcttcacgccccactacctggcccaggctgagctggagcacacc
aagcagcgccactccttccctgacaggctggttcgtagccgcagctctgacatcgtgtgc
ccaggccgccggcccacaagtgaccccggccttaatcggcgggtagcagttgaagagcgt
gaccctgccggggcattcgccttaggaccgtcctcgtcccccagcaaggactccctgaaa
ggagaggctgaggacaggaaagacagtgacgatgagaagtctgatcgcaacagaccatgg
tggaagaaacgttttgtgtcagccattcccaaagtgctgtattggacggctgagagtgat
gtcccagctccgatagcagcatttcggaaaagggacaagcaggaaaaagacgacgttacc
caggagcgcattccacaagatgacccattgcccagacatagctctcaagcgcaggcagct
gaagacatcctggacaagtacaggaacatcaaaaggaccagcccgagcgatggagccacg
ggcggagcttcttacgatggtacaggagatctttgtgttgaggacagtgtacatgactct
cctagagaagacactctgcagaacatttccacagatgacctcccagactcagccagccag
acagcgcagcagcatgactccaagttctctttcagtgatgcaaagaagaagttgaggttg
gcgttgtgttctgcagactcagtggctctgcccatcatggctcctgcaaccacacgaaat
gggctgcctgaccatatggactctgaagagaatgagatcgtctgcttcctgaagatccag
ctagcagaggccatcaaccttcaggataagaaccagatggcccagatccaggagaccacg
cgctgtgtcagccgctttgactctcgcacctgcaggaagctgctggctgccattgctgag
gattacagaaagcgggcaccatacatagcttatctaaccaggtgtcgtcagggcctgcag
acctctcaggcccatctggagaggctcctccagagggtgctgagagacaaggaggtggct
aaccgctacttcaccactgtctgtgttcggctccttctcgaacacatggaggccaagatg
cttgacttcattaaagcgttccagggatgcacagcagcggatgacaagacggcagcagtg
gaggattttctgagctacttgtacggtgccatggcccgtgatgccatttggcagtatgct
agcgaggaccagctgcaggatgcccagatggctattgagcgcagcgttatgaaccgtatc
tttaaactggctttctaccccaaccaggatggagatagtctcagagaccagcttttccat
gaacatatccagcggctctcaaaagttgtgactgccaatcataaagctcttcaagtccca
gaggtttacctgaaggaggctccctggccctctgcacagtctgagatcaggaccattaat
gcatacaagacgccacgagacaaagtccaatgtatactgcgcatgtgttccaccattatg
aacctcctcagtctggccaatgaagactccgtccctggagctgatgactttgtccctgtg
cttgtctttgtcctcatcagggcaaacccgccctgcctgctgtccaccgttcagtacatc
aataatttctatgccagccggctgagtggggaggagtgctattggtggatgcagttcacc
gcggcgctggaattcattaagaccatcgacgatcgcaagtga
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