Siniperca chuatsi (mandarin fish): 122876337
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Entry
122876337 CDS
T08948
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03030
DNA replication
schu03410
Base excision repair
schu03420
Nucleotide excision repair
schu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122876337 (rfc5)
03410 Base excision repair
122876337 (rfc5)
03420 Nucleotide excision repair
122876337 (rfc5)
03430 Mismatch repair
122876337 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schu03032
]
122876337 (rfc5)
03036 Chromosome and associated proteins [BR:
schu03036
]
122876337 (rfc5)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122876337 (rfc5)
DNA replication proteins [BR:
schu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122876337 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
122876337 (rfc5)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122876337 (rfc5)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122876337 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
122876337 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_24
AAA_assoc_2
RuvB_N
AAA_14
AAA_16
ResIII
DEAD
DUF815
PhoH
AAA_7
AAA_19
AAA_30
AAA_5
TIP49
ATPase_2
nSTAND3
AAA_2
DNAX_ATPase_lid
Mg_chelatase
AAA_25
Glyco_hydro_57
Thioredoxin_6
AAA_3
DUF4119
Motif
Other DBs
NCBI-GeneID:
122876337
NCBI-ProteinID:
XP_044052496
LinkDB
All DBs
Position
LG5:29030446..29038552
Genome browser
AA seq
335 aa
AA seq
DB search
MASTSKAPLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPVLSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVVQQERIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYEKVTEDTVYTCTGHPLRSD
IANILDWSLNKDFTTAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRIGLLIKLA
DIEHRLASGTNEKIQLSSMVAAFQAVRDLVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacaagtaaagcaccgttacagaccagaaacttaccatgggttgaaaaatac
agaccacagaaacttgatgatctgatctcacacaaagatattctaagcaccattcagagg
tttatcagtgaggacaagcttccccatctcttgttctatggcccccctggaacgggcaaa
acctccaccatcctcgcctgtgccaggcagctgtacaaggacaaagagttcaattccatg
gtgttggagctaaatgcatcagatgaccgaggtattgatgttgtacgcggccccgttctg
agttttgccagcaccaggaccatcttcaagaaaggcttcaagttggtgatactggacgag
gccgatgccatgacccaggacgcccagaatgcattgcggcgagtgattgagaagtttaca
gaaaacactcgattctgtctgatctgcaattacctgtccaagatcatcccggccctgcag
tctcgctgcacaaggtttcgcttcggcccgctgtccccggaccagatgatccctcggctg
gagcatgtagtccagcaggaacgtattgacataactccagatggaatgaaggccattgtg
accttatcatcaggtgatatgagaagatcactcaacatattgcagagcaccagtatggcg
tacgagaaggtcacagaggacacagtgtacacctgcacgggtcaccccctccgctcagat
atagccaacatcctcgactggtcgctcaacaaagacttcaccacagcgtacaaccaaatc
cttcagctgaagactttaaagggtttggccctgcatgatatcctcactgaggttcatctg
ctcatacacagagtggactttcctccagctattcggattggtctgctcatcaagttggct
gacattgaacacaggctcgcctcaggaaccaatgagaagatccagctgagctccatggtt
gcagctttccaggcagtgagagacctcgtggtcagcgaggcctcttag
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