KEGG   Siniperca chuatsi (mandarin fish): 122876337
Entry
122876337         CDS       T08948                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu03030  DNA replication
schu03410  Base excision repair
schu03420  Nucleotide excision repair
schu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:schu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122876337 (rfc5)
   03410 Base excision repair
    122876337 (rfc5)
   03420 Nucleotide excision repair
    122876337 (rfc5)
   03430 Mismatch repair
    122876337 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:schu03032]
    122876337 (rfc5)
   03036 Chromosome and associated proteins [BR:schu03036]
    122876337 (rfc5)
   03400 DNA repair and recombination proteins [BR:schu03400]
    122876337 (rfc5)
DNA replication proteins [BR:schu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    122876337 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    122876337 (rfc5)
Chromosome and associated proteins [BR:schu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    122876337 (rfc5)
DNA repair and recombination proteins [BR:schu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     122876337 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    122876337 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_24 AAA_assoc_2 RuvB_N AAA_14 AAA_16 ResIII DEAD DUF815 PhoH AAA_7 AAA_19 AAA_30 AAA_5 TIP49 ATPase_2 nSTAND3 AAA_2 DNAX_ATPase_lid Mg_chelatase AAA_25 Glyco_hydro_57 Thioredoxin_6 AAA_3 DUF4119
Other DBs
NCBI-GeneID: 122876337
NCBI-ProteinID: XP_044052496
LinkDB
Position
LG5:29030446..29038552
AA seq 335 aa
MASTSKAPLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPVLSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVVQQERIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYEKVTEDTVYTCTGHPLRSD
IANILDWSLNKDFTTAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRIGLLIKLA
DIEHRLASGTNEKIQLSSMVAAFQAVRDLVVSEAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggcttctacaagtaaagcaccgttacagaccagaaacttaccatgggttgaaaaatac
agaccacagaaacttgatgatctgatctcacacaaagatattctaagcaccattcagagg
tttatcagtgaggacaagcttccccatctcttgttctatggcccccctggaacgggcaaa
acctccaccatcctcgcctgtgccaggcagctgtacaaggacaaagagttcaattccatg
gtgttggagctaaatgcatcagatgaccgaggtattgatgttgtacgcggccccgttctg
agttttgccagcaccaggaccatcttcaagaaaggcttcaagttggtgatactggacgag
gccgatgccatgacccaggacgcccagaatgcattgcggcgagtgattgagaagtttaca
gaaaacactcgattctgtctgatctgcaattacctgtccaagatcatcccggccctgcag
tctcgctgcacaaggtttcgcttcggcccgctgtccccggaccagatgatccctcggctg
gagcatgtagtccagcaggaacgtattgacataactccagatggaatgaaggccattgtg
accttatcatcaggtgatatgagaagatcactcaacatattgcagagcaccagtatggcg
tacgagaaggtcacagaggacacagtgtacacctgcacgggtcaccccctccgctcagat
atagccaacatcctcgactggtcgctcaacaaagacttcaccacagcgtacaaccaaatc
cttcagctgaagactttaaagggtttggccctgcatgatatcctcactgaggttcatctg
ctcatacacagagtggactttcctccagctattcggattggtctgctcatcaagttggct
gacattgaacacaggctcgcctcaggaaccaatgagaagatccagctgagctccatggtt
gcagctttccaggcagtgagagacctcgtggtcagcgaggcctcttag

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