Siniperca chuatsi (mandarin fish): 122876470
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Entry
122876470 CDS
T08948
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03030
DNA replication
schu03410
Base excision repair
schu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122876470 (pole)
03410 Base excision repair
122876470 (pole)
03420 Nucleotide excision repair
122876470 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schu03032
]
122876470 (pole)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122876470 (pole)
Enzymes [BR:
schu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122876470 (pole)
DNA replication proteins [BR:
schu03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
122876470 (pole)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
122876470 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
122876470
NCBI-ProteinID:
XP_044052792
LinkDB
All DBs
Position
LG5:complement(18120996..18137854)
Genome browser
AA seq
2291 aa
AA seq
DB search
MVLQNSGRFKSDRGQSGGDQENQDDGSSMSALKRLERSQFTDEMDARFGFDRMKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYL
SKKFQGKVAKLEIMPKEDLDLANHLVGLKRSYIKLSFNTVDDLIKVKREISPAVRKNRER
EQSNDAYTSMLSSALSGGNVNSADEDGMSKSISDQLDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTIFNEDDEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFIETRAALHGLSMHREIGFQKDNQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQIFNKLTDDGHVMDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLMQRVERTMRHAIEEEEKIPLEQVTNFNEV
CDEIKKKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMIDEATCAACDFNKP
GATCQRRMTWQWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRPFHTLNREEQAKHE
KKRLADYCKRAYKKTHVTRLEKRVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQDSGDAADIKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPGSLTYNTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEDVYASVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSKKLEEYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHQP
LEAGQAADIEDFGMPARPLQPAILISTKRKRVSQGEDSQVESQDVELTQSWREILGPPPP
MGKTREERLVWLRYHKKKWELQLRQRKERKKRRRLLDGEAQPVGGGVIRDGPITGLGSFL
RRTARSILDMPWQIVQIAETSHPGVYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGA
TYKKVNRMLPRSNVVYYLYEYCVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALV
QLGCVCMVNKHVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHMYLYHHSQGHKAL
FGLFIPSQRKASIFVLDTVRSNQMPNLGNLYTAERTALLEKTTEELLPPEKHNFEVRAEN
DAKAIYRALQRILLNYKEERRGPTLIAVQSNWELQRLAAGMPVLEEFPVVPVHVVDEISY
NVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRK
HNHLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINAQGCYSTVCVELDLQSLAVNTI
LQSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASALASYDETALCSNTFRILKSMV
VGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKVFLQLVSEFKRL
GSTVVYGNFNRIILCTKKRRIDDAIGYVEYITNSIHSREIFHSLSISFSRCWEFLLWMDP
ANCGGVKGKLPSSILYGEEGTKQKKNSGGEGDEEGSEDEDEVEEDDGDGETDEVEELIES
NWNIMQYLPQTASCQKYFLMTVSAYIAAVYHSMKEELRRNASGATPVKRRGGSQVSQQAV
GDLSALPGMISFSQEYVSSELTQNFFTITQKIQKKVTGTRSVTQPSEMFPILPGSHLPLN
NPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEDAQFRDPCNSYVLPEVIC
HHCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQVQYETESIEMALVEALQKKLMSYTLQD
LVCTKCKGVKEANMPLYCRCAGDFDLTFPAKSFSEQITVFRNIASHYNMSFLEETIDWLL
VMSPHISQSAH
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggttctgcaaaacagtggaaggttcaaatcggaccgaggacaaagtggaggagatcag
gaaaaccaggacgatggatcctccatgtcggccctcaagcggctggagcgcagccagttc
accgacgagatggacgcccgcttcgggttcgacaggatgaaggagccgggggagaaaaca
gggtggctgatcaacatgcaccccacagagatcctggatgaagacaagaggatgatcagt
gctgtggactattatttcatacaggaggatggaagcaggtttaaggtggccctccccttc
aagccatatttttacattgccactaaaaagaactgcgagagagaagttatctcatacttg
tcgaagaagttccaaggaaaggtggcaaagcttgaaattatgccgaaagaggacctagac
ctggcgaaccatctagttggactgaagagaagctacatcaagctgtcattcaacaccgta
gacgacctcatcaaggtcaagcgtgagatctccccagcggtacgcaagaacagagagagg
gagcagtccaatgatgcctacacctcaatgttatcaagcgccttatcgggtggcaatgtg
aactcagcagatgaagacgggatgtcaaagagtatttcagaccagttagacaacatagtg
gacatgagagagtacgatgtgccctatcatgtgcgattgtccatcgacctcaagatccac
gtggctcactggtataatgttcggtacagaggcagcgcgtacccaccagagattgtacgg
agggatgatcttgtggagcgaccagaccctgttgttttggctttcgacatagagaccacc
aaactgccactgaagttcccggatgcagagaccgatcagattatgatgatctcctacatg
atcgatgggcaggggtttctaatcacaaacagagagattgtctctgaggacattgaagat
tttgagttcactcctaaacctgaatatgaagggcctttcactattttcaatgaggatgat
gaggcggccctcattcagaggtggttcgatcacgttcaagaaaccaagccaaacatcttt
gtgacctacaatggagacttctttgactggccttttattgagactcgggctgctctccat
ggactgagcatgcacagggagattggtttccagaaggataaccagggagagtacaagtcc
agtcaagccatccacatggactgcttgaggtgggtaaagagagacagctacctgccggtg
ggaagtcataatctgaaggcagcagcgaaggctaaattgggctacgacccagtggagctg
gacccagaggagatgtgccgcatggcaacagaggaaccacagactttagccacctactct
gtgtcagatgctgtggccacgtattacctgtacatgaaatatgttcaccccttcatcttc
gctctgtgcaccatcatccccatggagcctgatgaggtgctgcgtaaaggttctgggact
ctgtgtgaagctctgctcatggtacaggccttccacgcaaacatcgtcttccccaacaag
caagagcagatcttcaacaaactgacagacgacggccacgtcatggactctgagacctac
gtgggcggccatgtggaggcacttgagtccggggtgttccgcagtgacatcccctgccgt
ttcaaaatgaatccagctgcgtttgacttcctgatgcaaagagttgagagaacgatgcgt
cacgccatcgaggaagaggagaaaatccctttggagcaagtcaccaactttaatgaggtt
tgcgatgagatcaaaaagaagcttacttccctgaaggaggttccaaacaggatcgaatgc
cccctcatctaccatctggacgttggggcgatgtaccccaatatcatcctcacgaaccgc
ctgcagccatccgctatgattgatgaggccacttgtgctgcctgtgactttaacaagcct
ggtgccacctgccagaggaggatgacctggcagtggagaggggaaatcatgcccgccagc
cgcagtgagttccaccgcatccagcagcaacttgagtcggagaagttcccgccatttttc
cccaacggtccacctcggcctttccacactctcaacagggaggagcaggccaaacacgag
aagaaacgtcttgcagactactgtaagagggcctataagaagacacacgtcaccaggctg
gagaagcgagtcaccaccatctgtcagagagaaaactccttctatgtcgacactgtgaga
gctttcagagatcggcgttacgaattcaaaggactccacaaggtgtggaagaagaaactg
tcagcagctcaagacagcggagatgctgccgacatcaagcgctgcaaaaacatggagatc
ctgtacgattctcttcagctggctcacaagtgtattctgaactctttctatggctatgtc
atgagaaaaggggcgcggtggtactccatggagatggctggcattgtgtgctacaccgga
gccaacatcatcactcaggccagagagctcatcgaacaaatagggaggccccttgagttg
gacactgacggtatctggtgtgtcctccccaacacctttcctgagaactttgtggtgaaa
accagtaatgagaagaagcccaaggtgaccatctcttacccaggggccatgctgaacatc
ctggtgaaggagggattcaccaacgatcagtaccacgagctggtcgaccctgggtccctc
acttacaacaccaggtcagagaacagcatcttctttgaggtggacggcccgtacctggcc
atgatcctgcctgcctcgaaagaggaagggaagaagctgaagaaaaggtatgctgtgttt
aatgaggatggctctctggctgagctgaagggttttgaagtgaaaagaagaggagagctc
cagctcattaagatttttcagtcatcggtgtttgaggctttcctcaaaggtaccactcta
gaggatgtgtacgcctctgtggccaaagtggctgactactggctggacgttctgtacagc
aaggctgccaacatgccagatgcggagctgtttgaactgatttcagagaatcgttcaatg
tccaaaaagctggaagaatacggagagcagaagtccacttctatcagcacagctaagaga
ctggctgagttcctgggagaccaaatggtgaaagatgctggtctgagctgtcgctacgtc
atctcccgaaaaccggagggatcgcctgtcacagaaagagccattcctctggccatcttt
caggcagagcccagtgtgaagaaacatttccttcgtaagtggttgaagatgcccagcttg
cacgacttggacatccgctctatccttgattggagttattacatcgagaggttgggtagt
gccatccagaaaatcatcaccatccctgcagctcttcagcaggtgaagaatccggtaccc
agagtgaggcatcctgactggcttcataagaaactcctggagaaaaatgatatctacaag
caaaagaaaatcagtgagctgttcaccagcgaggggaagagacaggtggcccatcagcct
cttgaagcaggccaagctgcagacatagaggactttgggatgccagccagacctctgcag
ccagccatcctcatcagcaccaagcggaagcgggtttctcagggggaggatagccaggtg
gagtctcaggatgtcgagctcactcagtcctggagagagatcctcgggccacccccaccc
atgggaaagacacgggaggagcgtctagtgtggctgcgttaccataagaagaagtgggag
ctgcagctgaggcagaggaaggagagaaagaagaggaggaggctgctggatggtgaagct
caacctgtagggggaggggtaatcagagatggccccatcactggcctgggaagcttcctc
cgcagaacagcacgcagcatcctggacatgccatggcaaattgtgcagattgcagagact
agtcaccctggtgtgtacaagttgtgggctgtaattggaaatgacctccactgcatgaag
ctcaacatcccacgtgtcttctatgtcaatcagaaagtcccaaaacaggaggagggagcc
acatacaaaaaggtgaaccgtatgctgcctcgctccaacgtggtgtactacctgtatgag
tactgtgtaccagaggacatgtaccaggagcacatcaatgagatcaatgctgacctttct
gccccagacattgaaggggtctatgaaacacaggtcccattgctgtttcgtgcactggtg
cagctcggatgtgtgtgtatggtcaataaacatgttgtgagggatctggctggcagggag
gctgacacttttgacctggagcatctagagatgaggtctctggcccagttcagctacctg
gaacctgggagtgttcgccacatgtacctgtatcatcacagtcagggtcacaaggctttg
tttggcctgttcatcccctctcagcgcaaagccagcatctttgtcctggacacagtcaga
agcaaccagatgcccaaccttggtaacctctacacagctgaacgcactgcactcctggag
aagacgactgaggagctcctgcctccagagaaacacaacttcgaggtccgagctgaaaat
gacgcaaaggctatttaccgcgcactgcaacgtatactgctcaactacaaggaggagcgt
cgtgggcccaccctcatcgctgtgcagtcaaactgggagttgcagcgtttggcagcgggg
atgccggtgcttgaggagtttccagtcgttccggtacatgttgttgatgagatcagctat
aatgtgctggactggcaacgccacggtgcccggcgcatgatccgccactacctcaacctg
gacagctgcctgtcacaggctttcgacatggccaggtattaccacttacctgtggggaac
ttgcctcaggatgtgtccatctttggctcagacttgttcctggcaagacatctacggaaa
cacaaccacctgctgtggctttcacccacagccaggcctgacctcggaggaaaagaggct
gatgacagtcgtctggtgatggaaagtgatgaccggggctctgttgagatcaatgctcaa
ggatgctattccacagtgtgtgtggagttggatctgcagagcctggcggtgaacactatc
ctccagtcacagcatgtcaatgacatggagggcggagctagtctgggcgtcagttttgac
gtgatccagcaggcctcgttggaggacatgatgtcaggaaaccagggagccagcgctctc
gctagctatgatgagactgctctctgctccaacaccttcaggatcttgaagagcatggtg
gttggatgggtcagagagatcacgcagtaccacaatgtgtatgcagataatcaggtgatg
catttctaccgctggctgcgctcccccagctctctgctctatgaccctgcactgcaccgc
accctgctcaacatgatgaagaaggtgtttctacagttggtttcagagttcaaacgtctc
ggctccactgtggtgtacggaaacttcaacaggatcatcttgtgtactaaaaaacggagg
atagatgacgccattggctacgtagagtacatcaccaacagcatccactccagagaaatc
tttcactctttgtccatctccttctcccgatgctgggagttcctgctgtggatggatccg
gccaactgcggcggcgtgaagggcaaactgccctccagcatcttgtacggagaggaagga
accaaacagaagaaaaacagtggaggggagggagatgaggagggcagcgaggatgaagac
gaagtcgaggaagatgatggtgatggagagacggatgaggtggaggagctgattgagagc
aactggaacatcatgcagtatctgccacaaactgcctcctgtcagaaatacttcctcatg
actgtctctgcctacattgcagcggtctaccacagcatgaaagaggagctgagacgtaac
gcttctggggcaacgccagtcaagagacgtggaggcagccaggtttcccagcaggcagtg
ggggacttgagtgctcttcctggaatgatctccttctcccaggagtatgtgtccagtgag
ctgacacagaactttttcactatcactcaaaaaatccagaagaaggtgacaggtaccagg
agtgtgacccagccctcagagatgtttcccatcctgcctggatcccacctgccactcaac
aacccagcactggagtttatcaaatatgtctgccaggtcctttcactggatgccaacata
gtgaaccaggtgaacaaactgaaaagagacctcctgcgtctcgtggatgtcggagagttt
tcagaggatgcccagttccgtgacccctgtaactcttacgtcctgccagaggtcatctgc
caccactgcaatttctgtcgtgaccttgacctctgcaaggacccgtctgtggcacaagat
ggatcggttttgcctcagtggttctgctccaactgccaggtgcagtatgagactgagtct
attgagatggctctggtggaagctctgcagaagaaactgatgagctacacactgcaggac
ctggtgtgtacaaaatgtaaaggagtgaaggaagcgaacatgcccctgtactgcagatgt
gctggagattttgaccttactttcccagccaagagcttctctgagcagatcacagtgttt
cggaacatagcgtcccactacaacatgagcttcctggaggagaccattgactggttgctt
gttatgagcccacacatcagccagagcgctcactaa
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integrated database retrieval system
