Siniperca chuatsi (mandarin fish): 122876639
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Entry
122876639 CDS
T08948
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122876639 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122876639 (snrnp200)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122876639 (snrnp200)
Spliceosome [BR:
schu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122876639 (snrnp200)
Complex C
U5 SnRNP specific factors
122876639 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
122876639
NCBI-ProteinID:
XP_044053153
LinkDB
All DBs
Position
LG5:13318173..13332826
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYSVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRHMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDMEAMDIDHGESMAPRQLLDLEDLTFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVAIEKLPKYAQAGFEGFKTLN
RIQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLPDMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRTDLVHTAAN
VLDKNSLIKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHASSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFVVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLNKINDSTLKETLANGVGYLHE
GLSATERKIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDALLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRTALLQLSDVQMADVARFCNRYPNIELSYEVAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSADVKEADSEGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcccgtagcctgcagtacgagtacaaagcgaactcaaatttggtg
ttgcaagctgatcgctctctgatcgaccgcacacggagagatgaacccaccggagaggta
ctgtctctggtgggaaagctggaggggaccaagatgggtgacaagtctcagaggaccaaa
cctcagaagctggaggagagacgagacaagaggcgaaaaagagacgaggacaggcacgat
atcaacaaaatgaagggctttacccttctgtctgaaggcattgacgaaatggtgggcatc
gtgtacaagcctaaaaccaaagaaaccagagagacctatgaagtgctgcttagcttcatc
catgctgctttgggagatcagccacgtgatatcctgtgtggagcggctgatgaagtatta
gcagtgttgaagaatgataaaatgagggataaggaaaggcggcgtgaagtagagcagctt
cttggacccgctgatgacacgcgctaccatgtattggttaatttgggaaagaagatcaca
gactacggaggggacaaggacttacagaatatggatgacaacatcgatgaaacatacagt
gtgaatgtccagtttgaatctgatgaggaggagggggatgaagaccagtttggagaggta
cgagacgaacactcagatgaagacagtgaaggagaggaggcaggtgtgggatgtgctctt
tcagccaaccttggtgccacaggcgatgtgatgacagtgaagaaaaaagatctacatcct
cgagacattgatgccttctggctccagcgtcagctcagccgtttctatgatgatgccatt
gtctcccaaaagaaagctgatgaagtcttagaaatcctcaagactgccagcgatgataga
gaatgtgagaaccagctggtgttgctgctgggcttcaacacctttgatttcatcaaaatc
ctccgtcagcatcgccacatgattcagtattgtaccatgcttgcaagcgctcagagtgag
gcagaaaaggaacggatcataggaaagatggagtctgatcaagaactatcgaagattctt
taccagctgcaagagacggagaaggaggatattattcgggaggagcgatctcgcagggag
agggtgaggaagtctcgtgttgatgacatggaggcgatggacattgaccatggagagtca
atggcccctcgacagttgctagatcttgaggacctgaccttcacacaagggagccacttc
atggccaacaagcgttgccagctgccagacggctcatttcgcaaacagcgcaaaggttat
gaagaagtccatgtgcccgccctcaaacccaagccctttgctgacgatgaggtgcttgtt
gccattgagaagttgcccaagtatgcacaggctggatttgaaggcttcaaaaccctgaac
cgcatccagagcaagctgttcaagacgaccatggagacagatgagaacctgttagtgtgt
gcacctacgggagctggtaagaccaatgttgctttgatggcaatgctgagagaaatcgga
aagcacatcaacctggatggaaccatcaatgtggacgacttcaaaatcatctacattgca
cccatgcgctcactagtacaggagatggtgggaagttttagtaagcgcttggcaagttac
ggcatcacagtgtctgagctgacaggagaccaccagctctgtaaagaggagattaacgcc
actcaaatcatcgtctgcacccctgagaaatgggacatcatcacccgtaaaggtggagag
cgtacctacacccagctagtgcggctcattatcattgatgaaatccacctgctgcatgat
gaccgtggaccagtgttggaatctctggtggcaaggaccatccgcaatgtggagctgacc
caggaggatgtgcgtctgctgggcctcagtgccacattgcccaactacgaggatgtggct
acctgcctgcgtgtagatcctgccaagggactcttctacttcgacaacagtttccgccct
gtgcccctggagcagacttatgttggcatcacagagaagaaggccatcaagcgtttccag
atcatgaatgagattgtctatgaaaagataatggaacatgctggaaagaaccaggtgcta
gtgtttgtccactccaggaaggagacgggaaagactgccagggccataagagacatgtgt
ttggagaaggacacactgggtcttttcctcagagagggttcagcatccactgaagtgttg
agaactgaggcagagcagtgcaagaacctcgagctgaaggatttgctgccgtatggcttc
gcgatccaccatgctggtatgaccagagtggaccgtacgctggtagaggatctgtttgct
gatcgacacatccaggttctggtgtccacagctactctggcttggggtgtcaacctgcca
gcacacactgtcatcatcaaaggtactcaggtgtacagcccagagaaaggcagatggact
gagctcggagcgctggacattttacagatgcttggtcgagccggccgtcctcagtacgac
accaagggagaaggaatcctgatcacgtcccacggagagctgcagtattatctgtccctg
ctcaaccagcagctgcccatagagagtcagatggtgggcaagctacctgacatgctcaat
gctgagatagtattgggcaatgttcagaccgtaaaggatgctgtgaactggctcggctac
acctacctgtatgtgcgcatgctccgcaaccccaccctgtatggtgtctcccatgatgac
cggagttcagaccccctgctggagagacgcaggacggacctggtgcacacagcagccaat
gtcctggacaagaacagcctcatcaaatatgacaagaggactggcagcttccaggttaca
gatctgggacgcattgccagtcacttctacatcactcatgactccattcaaacttacaac
cagctactgaagcccactctcagtgagattgagctcttcagagtcttttcactttcctcg
gagttcaggaacatcactgtgagagaggaggagaagctggagctgcagaagctgctggaa
agagttcctatacctgtgaaggaaagcattgaggagcccagtgctaagatcaatgtgctg
ctccaggcatacatctctcaactcaaactggagggctttgctcttatggctgacatggtt
tatgttacacagagtgctggaaggttaatgcgggccatattcgagattgtactcagcagg
ggctgggctcaactgacagacaagaccatgaatctttgcaagatgattgataaaagaatg
tggcagtcaatgtctccgctgcgacagttcaagaagctgccggaggaagtgatcaagaag
attgagaagaaaaacttcccctttgagcgtctctatgacctcaaccacaatgagattggt
gagctgatccgaatgccaaaaatgggaaagaccatccacaaatacgtccaccagttcccc
aaactggacctggctgtccatctgcagcccatcacccgctctacactgaaagtggagctc
accatcacgcccgacttccagtgggatgacaagattcatgcatcatccgaggctttctgg
atcctggttgaggatgtggacagtgaggtcatcctccaccacgagtacttcctactcaaa
gccaagtacgcccaggacgaacaccttgtgactttctttgtgccagtgttcgagcctctg
ccgccacagtacttcatccgtgtggtctcagaccggtggctctcctgtgagactcagctt
ccagtatccttccgtcacctgatcctgccagagaagtaccccccacctactgagctgctg
gacctgcagccactgcccgtcactgctctcaggaactctgcctttgaggctctctaccag
aacaagttccccttcttcaaccccattcagacacaagtgttcaacgcggtgtacaacagt
gatgacaatgtatttgtgggagctcccaccggcagtggaaagaccatctgtgctgagttt
gctattctgaggatgctgctgcacaacgcagaaggtcgctgtgtctacatcaccccaatg
gaagcactggctgaacaggtgtttgtcgactggcaccagaagttccaggacatcctgaac
aaaaaggtggtgctgctgacgggagaaactagcacagatctgaagctcttgggaaaaggg
gacattattgtcagtactcccgacaaatgggacatcctgtctcgtcgctggaaacagagg
aagaacgtccagaacgtcagccttttcgttgtggatgagacacacctcattggaggagaa
aatggacctgtgttagaggtcatctgctccaggatgaggtacatctcctctcaaattgag
cgtcccatccgcatcgtggccctcagctcgtctttgtccaacgccaaagatgtggcccac
tggctgggctgtagcaccacagccacattcaatttccaccccaatgtcagacctgtgcct
ctggaactgcacatccagggcttcaatgtgagtcacactcagactcgcctgctgtccatg
gctaagccagtatatcacgccatcatgaagcactctccctccaagccggccgtggtgttc
gtcccgtcccgcagacagactcgcctcacagccatcgacatcctcactttctgcgctgcc
gatgtggttcctcagaggttcttgcattgcacagagaaagaccttgctccattcctgaac
aaaataaatgattcaactctgaaagagactcttgctaacggcgtgggctacctgcacgag
ggtctgtctgcaactgaacgcaaaatagtggagcagctcttcaactcaggtgctgttcag
gtggtggtgtcctctcgttcactctgctggggcatcaacatctctgcacacctcgtcatt
gtcatggacacccagtactacaatggcaaaatccatgcatatgtggactatcccatatat
gacgtcctccagatggtgggcaaggcgaacagacccatgctagatgatgagggacgctgt
gtcatcatgtgtcagggctccaagaaggacttcttcaagaagttcctgtacgagccgctg
ccagtggagtctcacttggaccactgcctccacgaccacttcaatgctgagattgtcaca
aagaccgtggagaacaagcaggacgctgtggactacctgacgtggacattcctctaccgc
cgtatgacccagaaccccaactactacaacctgcaaggcatgtcccatcgtcacctgtca
gaccacctgtctgagctggtggaacacaccttacatgacctggagcagtccaagtgcatc
agcatagaggatgagatggatgtagcaccactcaatttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagacaaagatc
cgtgggttaattgagatcatctccaatgctgccgagtacaagaacattcccattagacat
cacgaggatgcacttctccgacagttggcccagaaagtgccccacaaactgaacaacccg
aagttcaacgatccccatgtgaagacaaacctgctgctgcaagcccacctctccaggatg
cagctgagtgctgagctgcagtcagacacagaggagatcctgagcaaggcggttcgtctg
atccaggcctgcgttgatgtgctgtccagtaacggctggctgagtcctgcactggcagct
atggagctggcccagatggtcacccaggccatgtggtccaaggactcgtacctcaaacag
ctgcccttcttcacctcagagcacatcaaacgctgcacagataagggagtggagagtatc
tttgacatcatggagatggaggatgaagacagaactgctctgctgcagctctcagacgtc
cagatggccgatgtggctcgcttctgtaatcgctaccccaacattgagctgtcgtacgaa
gtggcagaaaaggacaacatcaagagtggcagtccagttctggttcaggttcagctggag
agagaggaggaggttactgggcccgtcatcgcaccactcttcccccagaaacgtgaggag
ggctggtgggtggtgatcggtgaccccaagtctaacagccttatctccatcaagaggctg
actctacagcagaaagcaaaggtcaagctggactttgttgcaccagcgatgggcgttcat
aactacaccctgtacttcatgagtgacgcatacatgggatgtgaccaggagtacaagttc
agcgcagatgtgaaagaagccgacagtgagggagacagtgactcagactaa
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integrated database retrieval system
