Siniperca chuatsi (mandarin fish): 122876686
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Entry
122876686 CDS
T08948
Symbol
hnf1a
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X1
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122876686 (hnf1a)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
122876686 (hnf1a)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
122876686
NCBI-ProteinID:
XP_044053236
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Position
LG5:complement(11023302..11030700)
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AA seq
559 aa
AA seq
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MEERAAKAKPSRLTALQEQLVWALLGSGLTQDVLVQAMGDLERDRASAGPEKGERGDGES
SEEGEMDYPPPIFRELEKLSPEEAAKLRAEVDQLLQGDPWHVAKMVKSYMQQHNLPQREV
VESTGLNQSHLSQHLNKGTPMKNQKRAALYTWYVKKQCEISQQFTNAKHGLASAEEQGED
TRKGRRNRFKWGPASLQILFHAYERQKNPSKEEREGLVEECNRAECIQRGVSPSQLAGLG
SNLVTEVRVYNWFANRRKEEAFRHKLALDTPFTNQSASSSNHALPPSPEQGVKYSHQILC
DTVSSARGNGGERVGHLVVSPIQLEPSHTLLETHNPKQVSSGGPLPPVSTLTSLHSLSAT
PASSQSLIMASLPSVMSLGESSLLIGLASTQPQTLPVINNVGGTFTTLQPISFQQQLHAS
PQQPISQQLQSHMGASPFMATMAQLPCHMYNKSDSPQYHSSSLLSQAMVITDSSSLGTLT
SLAAVRQILTADPEEQTDSSLQEDSLHMQPRTPVPAASSESLEMYPISQTTESHQSHLLS
PSPTDISSYIPTQMVSTAQ
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagagcagccaaggcgaagccaagccgtttgaccgcccttcaggagcagctg
gtctgggccctgctgggatctggactgacccaggacgtcctggtccaagccatgggggat
ctggagcgagacagggcgagtgctggccccgagaagggagagaggggggatggagagagc
tccgaggaaggagaaatggattacccaccgcctatattccgagagctggagaagctttcc
ccagaggaggcggccaaactcagggctgaagttgaccagctactgcagggggacccctgg
cacgtcgcaaaaatggtgaaaagctacatgcagcagcacaatctccctcagagagaggtg
gtggagtccacaggactcaaccagtcccacctctcccagcacctcaataaaggcacgccc
atgaagaaccagaagagagccgctctgtacacctggtacgtcaagaagcaatgcgagatc
agccagcaatttaccaacgccaaacatggccttgcatctgcggaggagcaaggagaagac
accaggaaaggtcggaggaacaggttcaaatggggtccagcgtccctgcagatcctcttc
cacgcctacgaacgacagaagaaccccagcaaggaggagagagaggggttagtggaggag
tgtaacagggcagagtgtatccagaggggggtgtctccctcccagcttgctggcctgggc
tccaacttggttactgaggtccgggtgtacaactggttcgccaaccgccgcaaagaggag
gccttccgtcacaaactggctctcgacacaccttttaccaaccaatctgcctcctcgtct
aaccacgccctcccaccaagtcctgagcagggtgtgaaatacagccaccaaatcctgtgc
gacaccgtcagctcagccagaggtaacggaggggagagggtgggacatcttgtagtcagc
cctatccaactggagcccagccacacactcctcgagacacataaccccaagcaggtgtcc
agcggtggcccactgcccccagtaagcactctgacctcgctacacagtctgtctgccacc
cctgcttcctcacagagcctcatcatggcctcactgcccagcgtcatgagcctgggggag
tcctcgcttctcattggtttggcctccacgcagcctcagaccctgcctgttatcaacaat
gtgggtggcactttcaccactctccagccaatctcattccagcagcagcttcacgcctct
ccccagcagccaatatcacagcagctccagagtcacatgggtgccagtcccttcatggca
actatggcgcagctgccatgtcacatgtacaacaagtcggattcgccccagtaccattcg
tccagtctgctgtctcaagccatggtcatcactgacagcagcagcctggggacgctgacc
agcctcgctgctgtcaggcagattctaacagcggatcctgaggaacagacggactcatct
ttacaagaagactctctgcacatgcagccgcgcacacctgtgccagcagcttcttctgag
agcctagagatgtatcccatctctcagaccacagaaagtcatcaatctcacctcctctcg
ccttcaccgacagacatcagctcctacattcctacacaaatggtctctactgcacagtaa
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