Siniperca chuatsi (mandarin fish): 122876721
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Entry
122876721 CDS
T08948
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122876721 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122876721 (usp39)
Spliceosome [BR:
schu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
122876721 (usp39)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
122876721
NCBI-ProteinID:
XP_044053304
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Position
LG5:complement(19146989..19151849)
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AA seq
501 aa
AA seq
DB search
MVSLKREREAEVDDDDNEDRVAAKIGRGRVVEDRRSRHCPYLDTINRSVLDFDFEKLCSI
SLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSL
EDITYVLKPTFTKQHIAGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQAFSNV
PPLRNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLC
SKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKPSIITKAFQGSMRIFSKKLPHPDLPP
EEKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGNTE
KEYKTYKENFLKRFQLMKLPPYLVFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLTEE
AQVTEKNTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEMQDLQVTDILPQMITLSEA
YIQIWKRQESDNDTNNHRGCK
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggtttctctgaaacgagaaagagaggctgaagtggacgatgatgacaacgaagacaga
gtggcagccaaaataggccgaggacgtgtagtagaagaccggagaagccgtcactgtcct
taccttgacaccataaacaggagtgtgctggactttgactttgagaaactctgctccatc
tctctctcccacatcaatgtctatgcctgccttatatgtgggaaatactttcaaggtaga
ggtctgaagtcccatgcttacactcatagtgtgcagtttacccatcatgtgttcctgaat
ctgcacactctcaagttttactgtctgccggacaactatgagatcattgactcttcatta
gaagacatcacatatgtgctgaagccaactttcaccaagcagcacattgcaggactggac
aagcagggtaaactgtaccgagcctacgatggtacaacctacctaccaggcattgtaggg
ctcaacaacatcaaagccaatgactatgctaatgtggtgttacaggctttttccaatgtt
ccacctttgcgaaactacttcctggaggaggaaaactacaggggaatccgcagaccaccg
ggggacatcatgttcctcttggtgcagaggtttggtgagctgatgcgcaaactctggaat
ccgagaaacttcaaagcccatgtgtctccccatgagatgctgcaggctgtggtgctgtgc
agcaagaagaatttccaaattaccaagcaaggagatgctgtcgacttcatgacatggttt
ttgaatgctctgcatggagctcttggaggcacaaagaaaaaaccctcaatcattacaaaa
gcatttcaaggctccatgcggatcttctccaagaaacttccacacccagatttaccacca
gaggagaaagaggcattgcttgtgacagaggagtaccaggagcagatgtcagagtctacc
ttcctgtttctgacccttgacctcccaacagctccattgtacaaggatgagaaggagcaa
cttataatcccgcaggtccctctcttcaacatcctgggcaagttcaatggcaacacagag
aaggaatacaaaacctacaaagagaattttctcaaaaggttccagctgatgaaactgcct
ccgtaccttgtcttttgcatcaaaagattcaccaagaacaacttctttgtggaaaagaat
cccacaattgtcaacttccctatcacgaatgtagaccttcgtgagtacttgacagaagaa
gctcaagttacagagaagaacacaacttatgaccttgtcgccaacgtagtgcatgatggg
aaacccactgagggagcgtacagaatacatgttctgcatcatggaactgggaagtggtac
gagatgcaggacctgcaggtgactgacattctcccccagatgattacactgtcggaggcc
tacatccagatctggaagagacaagagagtgacaatgacacaaacaaccacagggggtgt
aagtga
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