Siniperca chuatsi (mandarin fish): 122876927
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Entry
122876927 CDS
T08948
Name
(RefSeq) LOW QUALITY PROTEIN: dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
122876927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122876927
Membrane trafficking [BR:
schu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
122876927
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
122876927
RAVE complex
122876927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
EIF3I
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
NBCH_WD40
PEP5_VPS11_N
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_WDR19_2nd
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
122876927
NCBI-ProteinID:
XP_044053835
LinkDB
All DBs
Position
LG5:complement(24015573..24071978)
Genome browser
AA seq
3099 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGNVNSVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGSTVCVFEPVLHPDQKDTSLTTVNCQWQKTGQFVLKSMVRNLAW
HPTGSTLLTGSSSLQLWSYVDGVKDEAEDAGKQAEITIRDSHSAWRCIWKSKTASQVSLM
KFSPDGEFFATAGQDDCLVKVWYSTSKWKSGVSRLFTPPEPSVSVQGELAFSFVYLAHPR
SVTGFSWRKTSKYMPRGAVCNVLLTCCKDSVCRLWAETLLPGDSLLSGYHNNHTSGQHSD
TLGCAGPSRKNTCNGKTQGTAQELNFQESLHGSFYQDVPQPSLTGCLPHHQSRHYNHKKS
SSNMPHAHTLCHFHIAASINPATDIPLLPSISSLSAGDDEEPGGPFTVHWLNNKELHFTL
AMEVFLQQLRGSLEQCAHEEPEDEDNFDEEDNSSRPSDPQGPEAVELSLAAVKHQVDVLL
EEWNKGADMLFSIHPTDGSLLVWHVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDAISLS
HSVVMYASNKNVDLAIQHGRQRPPGSTLPQIKSALISYGGQGKAAPSSSLRLSIFTPNVL
MISKHADGSLNQWAVSFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHH
NALRTPEADNILAPPDACSSGFSHSASLPRGSRPSRVSLGVVSQDPNAIYSELILWRVDP
VGPLSLSGGVSELARINSLHASAFANVAWLPTLIPSSCLGMYCNSPSACFVASDGHSLRL
YQAVIEAKKLLSELSNPDISKYVGEVFNIISQQSTAKPGCIIELDVITGFQGKETQLLHV
FEEDLILGSERTESMQETPDSPHTASSEPAFSARFFLVVVELTPTGRSLLHMWHLHLAAR
PVTMEETTTDKDATTASAMDSSQFNFDTFSSPVTQKSKPCTSNLQSACRLSLTTHRLYSQ
EMSLPEGVEAISVTPSAGHLSASCSLPAGRVPYLLATSCSDGKVRFWRCNVIATKPSSTD
NLVYQWEEWPLLVEERLPNSSAVSVQGRPIEVSCCHTGRIAVAYRQMPNTPLNSFGLLTS
SPYLYFNNNTHPAPTVTVQRSPNLIPSPNPGSTREPLVHIGIFQCESTGGSQWILEQTIV
LDSTDPTANYGISNSTTGSVNEPSNMDLSIPNENCHGSSSKSLVHLDWVSQENGSHVLTV
GIGTKIYMYGHLSGKPPELCLSSDASRDRSLSRLVLLRSVDLVSSVEGSLPIPVSLSWVR
DGILVVGMDCEMHVYSQWQPPAPPKPNALIAQDTDISSSVSSIISAIRQSQEEGLSPGAP
VSSLAPPKKALTRSMMSLAQKLSGKRTAYDLPVEMEDSGLFEAAHQLFPTLPQYHPVQLL
ELMDLGKVHRAKAILSHLVKCIAGEIVALKDSSTNPEKRVRSRTISAGGSTARDQKLFSK
AENSTPDYTEISSIPPLPLYALLAADEDTLPKPDKVGSVSGDSGHGSSHTDAYDELFKTP
SIADLDPLDNDQEEMGNKVIDLSQYSPTYFGPEHAQVLSSHLLHSSLPGLTCMEQMSLMA
LADTIATTSTDLKDSQGKSKGGETLDECGLKFLLAVRLHTFLSTSLPPAHRAQLLRQGLS
TCHYAWAFHSEAEEELLNMLPALQKGEPTWPELRSMGVGWWLRSTNKLRRCIEKVARASL
QRNNDPLDAAIFYLALKKKAVVWGLYRSQKNAKMTDFFRNNFSEDRWRKAALKNAFSLLG
KQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETASTYKKILQRHVL
GQDKQIQAHQDPFLRSMAHWVLEDYSRALDTLLDQPANSARSGSAESKCDAGSSPVSTCN
PEVFNFYTYLRTHPLLLRRHFGSSDKAKVGLTAEGRRADSISLEERRLFFTAAYAHLQAG
CPMLALEVLSKMPKVRKHSKLPNQEXTSTTAELSVGRKNGQTSDPDWSQPALNGYDSDGN
SLSNSQSDSVLSFDWSQPSLTLPDESLELKWGSDKDDEEDDDEDEEETKNSQSGGTAESS
SVFQDTQDAMSPLMETVTGEDSEDSNDFLAPSNDILAVQLKFTACLKIMTNELRTLSTGY
ELDGGKLRYQLYQWLEREVVALQRCCSYRPCLPELSVQGDAPVSGLVEEEQPGSPRGDSQ
RSRRHWLQSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESHQDDAIQSAVTSCSP
QTSIPLLMACTANVKTVVANPIVYLTNLTHDILKTINALNSPPHPDVVNNEIYVMHTLAA
SLSACIYQCLCDGHTHSHVNHFTGIVYQSVLLSQKPVKTVSMDESAQPNTSPSQWPGIAS
LIRLLSSAGEESQPGLAVLLCEILTAVFLSLFVHGMATHSSNELFRIVAHPLNSKLWVTV
FGGGARTPVIEKPNSPTRTPPPASPCGSDRKSRRFRLLSSRSGSKEEGPTSPKHGPVVEQ
EATSIFKERFVPPELSIWDYFIAKPSLPPSESRIEYDSEESQGSQDEDEDDGDEYEDLFD
PNSPQREHSNHNSYSWCLMRLAMVQLVLVNLKSFYPMAGYDLLDLPVGSPLCHAVLKMLQ
RWEQVLQKRLEIFGGPPSKYISTHLQDETATPGPALLRHKALFEPSNTPFRTSHPSALPV
KRLWQFLVKQEEVQETFIRHIFTKKRDPNESGEDQTDNMKCSGMEETGNHQTESVQGCSG
GKARIIHKESDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDDAEAKG
FGGDDFLVVHTRDDFAAIHGTTPYTHSSPGTPINMPWLGGLQTGRGASVMIKRNINNVRR
MTSHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADG
GLSLWQTNTSGNAPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCMWDTLVTP
ANSLVHAFCCHESGATVLSMAPRQQLLITGGRKGWISVLELPHRHQRQSFQAHDSPVKAL
AVDPTEDCFISGSSEGNIKVWSLTTQCPLYTFPNEHARQSLFRNLGTGVMQIEVGPTNHI
FSCGADGTMKMRILPNRFSVVNNNNNNHGNLKNDVKFFI
NT seq
9300 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcacaggggctgtcaaccctggagacaattgtttctctgta
gggaacgtcaacagtgtgccattcacggcctatgcgtcaggttgtgacgtggtgattttg
ggcagtgactttgagcgactgcagatcatcccaggggccaaacatggcaacatccaggtc
ggctgtgttgactgctcacttcagggtggacagattgcagcttcctatggaagcactgtg
tgtgtctttgagcctgttctgcacccagatcaaaaagacacatcgctgactacggtgaac
tgccaatggcagaagactggtcaatttgtattaaagtctatggtacggaatctggcctgg
catcccacaggcagcactctcttaactggctctagtagcctccagttgtggtcttatgtt
gatggagtgaaagatgaagctgaagatgcgggaaagcaggcagaaattaccataagagac
tctcattctgcctggaggtgcatctggaagagcaagacagcctctcaagtcagtttaatg
aagttctctcctgacggggaattctttgctactgctggacaggatgactgcctagtaaag
gtctggtacagcaccagtaagtggaagtcaggtgtttctagactcttcacacctccagaa
cccagtgtcagtgttcagggagagctggccttttcctttgtctacctggcccacccccgc
tctgttaccggcttctcttggaggaagaccagcaagtacatgccacgaggtgcagtgtgt
aatgttctgctcacctgctgtaaggacagcgtatgccggctctgggcagagacgctgttg
ccgggtgacagcctcctgtccggttaccataacaaccacacttctggccaacacagtgac
acactcggatgtgctggcccttctaggaaaaacacctgcaatgggaagacacaaggaaca
gcacaggaattgaattttcaagaatcattgcacggctccttttatcaggatgtgccccag
ccctctctgactggctgcctgcctcaccatcaaagccgacactacaaccacaagaagagc
agcagcaacatgccccatgcccacactctctgccacttccacattgccgccagcatcaac
ccagcaacagacattcctctgctgccctccatctcttctctgagtgccggggatgacgag
gaacctggaggtccttttactgtccactggctcaacaacaaagagcttcatttcacttta
gctatggaagtctttctgcagcagctccgaggcagcctggagcaatgtgcccatgaagag
cctgaagatgaggataactttgatgaagaagataatagtagcaggccaagtgacccccaa
ggacctgaggctgtggagctttctctggcagcagtgaagcaccaggtggacgtgctgtta
gaggagtggaataaaggggcagacatgctgttcagtatccatcccacggacggctctctg
ttagtctggcatgtggactggttagatgaataccagccaggcatgttcagacaagctcag
gtgtcatttgtgtcccgtatccctgtagcgttccctacaggcgatgcaatctccctgagc
cacagtgtggttatgtatgccagcaacaagaacgtggatctagctatccaacatggcaga
cagcgaccacctgggagcacattgcctcaaataaaatctgctctaataagctacggaggt
caaggaaaagctgcacccagcagtagtcttcgactaagcattttcacccccaacgtcctt
atgatctccaaacatgccgatggctccctgaaccagtgggcagtcagcttcgcagaagac
tctgctttctccactgtgctcagcgtctctcacaagtcacgctactgtggccaccgcttc
cacctcaatgacctggcctgtcactcattactccctctcctgctcaccacctcgcaccac
aacgccttgaggacgccagaggcagacaacatcctggctcctccggacgcctgctcctct
ggtttctctcattcagcatctctgccccgtgggtcaaggcccagccgggtgtccctaggt
gtggtttcccaggatcccaatgcaatctatagtgagctgattttatggagagtggaccct
gttggcccactgtctttgtcaggcggggtctccgagctagctcggatcaattctctccat
gcatcagcatttgctaatgtagcctggttgcccacgctcattcccagcagctgtttaggt
atgtactgtaactcccccagcgcctgctttgtggcaagtgacggccactcactcaggctg
tatcaggctgttattgaagctaagaaactcctgagtgagctctccaatcctgacatatca
aaatatgttggggaggtgttcaacatcatcagtcagcaatctacagcaaaaccagggtgt
attatagagctggatgtcattactggctttcaggggaaggagacacagctcctgcatgtt
tttgaggaggatctgatcctcggcagtgagagaacagagagcatgcaggaaactcctgat
tcgcctcacactgcctctagcgagccggccttctcagcacgttttttccttgtggtggtc
gaattgaccccaacaggtcgctcgctcctccacatgtggcatcttcatcttgcagctcgt
cccgtcaccatggaagagaccacaacggataaggatgccactacagcttctgctatggac
agctctcagtttaactttgacacattcagttctccagtaactcagaagagtaaaccctgc
acttccaatctgcagagtgcctgtcgccttagcctcacaacacacaggctatacagccaa
gagatgtctctgccagaaggggtggaagccatcagtgttacaccttcagcaggtcacctg
agcgcatcatgttctctgccagctggccgtgtgccttacctccttgctacttcttgttct
gatggaaaggtgcgcttctggagatgtaatgtcattgcaacaaagccttccagcacggac
aacctggtgtaccagtgggaggagtggccactcctggtggaggagaggcttcccaacagc
agcgcagtaagcgtgcaaggtcgccccatagaggtcagctgctgtcacactggacggatt
gcagttgcttacaggcagatgccaaacacacctctgaactcttttggactgttgacttcc
tccccttatttgtactttaacaataacacccacccggccccaacggtgactgtacagcgc
agcccgaatctcattccgagccccaacccaggaagcactagagaaccattggtccacatt
ggcatcttccagtgtgagtccactggtggttcacagtggattctagagcagaccatagtc
ctggacagcacagatcccacagctaactatggtattagcaatagcacaactggaagtgtt
aatgagccaagtaacatggacctctctatacctaacgagaactgtcatggttctagtagt
aagagcctggttcatttggactgggtgtcccaagagaatgggtcccatgttctgactgtt
ggtattgggacaaagatttatatgtacggccatctctctgggaagcctccagaactctgt
ctgtcatctgatgccagtagagaccggagcttgtctcgcctggttctgcttcgatctgtc
gatctggtctcctctgttgaaggctcgttacccattccagtctccctctcctgggtacga
gatggcatcttggtggtaggcatggactgtgagatgcacgtctactcccagtggcagccc
ccagcaccacccaaacccaatgccctaattgcccaagacacagatatcagcagcagcgtc
tcctctataatctcagccatcagacagagccaggaggagggtctcagccctggggccccc
gtgtcttcactggcccctccaaaaaaggccttgacaagatcgatgatgagcctggctcag
aaactcagtgggaagcgaacagcttatgacctccctgtagagatggaggattctgggctt
tttgaagcagctcaccaactctttcccactctgccccagtaccatcctgtacagttgctg
gagctcatggatctagggaaggttcaccgtgccaaagcaatcctctcccacctggtgaaa
tgcattgctggagaaattgtggcacttaaagacagttccaccaatccagagaaacgtgtg
cgctctcgaaccatcagtgctggaggcagcacagccagggaccagaagttgttcagcaaa
gcagagaactccacccctgactacacagagataagctccatccctcccctgcctctctac
gcccttctggcagctgatgaggatacattaccaaaacctgataaagtgggcagtgtgagc
ggagatagtgggcatggttccagtcacactgatgcttatgatgagctctttaaaacaccc
agcatagcggacctggaccctctagacaacgatcaagaggaaatgggcaacaaggttatt
gacctgtcccagtacagtccgacatactttggtccagaacatgcccaggttctgtccagt
cacctccttcattccagtttgccaggcttaacctgtatggagcagatgtctctcatggcg
ctggctgacactattgctaccacaagcaccgacctcaaggacagccagggcaagagcaaa
ggtggcgagacactggatgagtgtggtctgaagttcttgctggccgtcagactccacacc
ttcctctctacctccctgcctccagcacatagagcacagctgctacggcaaggcctgtca
acgtgtcattatgcctgggccttccactctgaagctgaggaggaactgctgaacatgctg
cctgccctacagaagggagagcccacctggcctgagctgcgttccatgggtgtgggctgg
tggctgcgcagcaccaacaagcttcgccggtgtattgagaaggttgccagggcttctttg
cagagaaacaatgatcctctggatgcagctatattttacctcgcactgaaaaagaaggca
gtggtctggggtttgtacaggtctcagaagaatgccaaaatgacagactttttccgcaac
aacttcagtgaggaccggtggaggaaagcagcactgaaaaatgccttttctctgttggga
aagcagcggttccagcattctgcagccttcttccttctagccggctcccttaaggatgct
gtggaggtgtgcttagagaaaatgcaggacctacagctggccctggtgatctctagattg
tatgagtctgagtttgagacggcatccacctacaaaaagatcctccagagacacgttctg
ggtcaagacaaacagattcaagcccaccaggacccgttcctgcggagcatggctcactgg
gtcctggaggactacagcagggccttggacacgctactcgatcagcctgctaacagcgcc
cgctctgggtccgctgagagcaaatgtgatgctggttcctctcctgtgtctacatgtaac
cctgaggttttcaatttttacacctaccttcgtacccacccactcctccttcgccgccat
tttggctcttcagacaaggctaaagttggcctaaccgctgagggtcgcagggctgactcc
atcagcctggaggagagacgactgtttttcacagctgcatacgcacacctgcaagctggc
tgccccatgctggcacttgaagtcctctcgaagatgcccaaagtccgcaaacattccaaa
ctccccaaccaggagnatacaagcaccactgctgagctcagtgtcgggcgcaagaatgga
caaacatcagacccggattggtcacagccggctctcaacggctacgactcggatggaaac
agcttatccaacagccagtcagattcagtgttgagttttgactggagccagccgtcactg
acacttccagatgagtccctggagctgaagtggggaagtgacaaagatgatgaagaagat
gatgatgaggatgaagaagaaactaaaaatagtcagagcggtggaactgcagaaagcagc
agtgtgttccaggacacgcaggatgccatgtcgcctctaatggagacagtgacaggagaa
gacagtgaagacagcaatgacttcctagcaccatctaatgacatattagcggtccagctg
aagtttactgcctgcttgaagattatgaccaatgagctccggacgctgtcaacagggtac
gaactagatggagggaagctacgctaccagctataccagtggttagaaagagaggtggtg
gctctccagcgttgctgcagctacaggccctgcttgccagagctgtctgtccagggtgat
gcccctgtttctgggttggtggaggaggaacagcccgggagtcctcgtggtgacagccag
aggagcaggagacactggctgcagagtaaccagcccttactaaggatgtttctgagctac
tgcagcttgcatggctcccatggtggaggactggcctctgtacgcatggagctcatatta
ttgcttcaagagtctcaccaggatgacgccatccaatcagcggtgacgtcatgttctcca
caaacctctatccctcttctgatggcttgcacggccaatgtgaagacagtggtggccaat
cccatcgtctacctgaccaacctgactcatgacatcttgaagaccatcaatgcgctcaac
tcgcctccacatcctgatgttgttaacaatgagatctatgtgatgcacacattggctgcc
tctttgtcagcctgtatttatcaatgtctgtgtgatggacacacccacagccatgtgaac
catttcacaggaatcgtgtatcagagtgtgttgctgtctcagaagccagtcaaaactgtc
agcatggatgagtctgctcagcccaacacttccccttcacagtggccaggtatcgcttct
ctgattcgcctgttgagctcagcaggtgaggagagccagccaggcttagctgtgctgctc
tgtgagatcctgactgctgtcttcctcagtctgtttgttcacggcatggccactcactcc
agcaacgagctgtttcgcatcgtggcccaccccctcaacagcaagctttgggtgacagtg
ttcggaggaggtgcccggacccctgtcatagagaaacccaacagcccaacaagaaccccc
ccaccagcctcaccatgcggctcagacaggaagtccagacgattcaggcttctgtcatca
cgcagtggatccaaagaggagggcccaaccagtccaaagcatggccctgtggtggaacaa
gaagctacctctatctttaaagaaagatttgtccctccagagctcagcatttgggattac
tttatcgccaagccttcgctgccaccatcagaaagcagaattgaatatgactccgaggag
agccagggcagtcaagatgaagatgaagatgatggtgatgaatatgaagatttgtttgac
cccaactctccgcaaagagagcattcgaaccacaattcatacagttggtgtttgatgcgt
ctggcaatggttcagctggtgttggtcaacctcaagtccttttacccaatggcaggatat
gatctattagatcttcctgtgggctctcctctgtgtcacgctgtgctgaagatgctgcag
cgctgggagcaggtgctgcagaagaggctggagatcttcgggggccccccttccaagtac
atctccacccacctccaggatgaaacagccacacctggtcccgccctgctccgacacaag
gccctgtttgaaccgtccaacaccccgttcaggactagccacccttcagcgctgccagtg
aagcgtctgtggcagtttctggtcaagcaggaagaagtgcaggagactttcattagacac
atctttaccaagaaacgggacccgaatgagtcgggtgaggaccagactgacaatatgaaa
tgttcagggatggaggagacaggaaaccatcagactgagtcagtacagggctgctccgga
ggaaaagcacgcatcatccacaaggaatctgacatcatcacagcctttgccatcaacaag
gcaaatcgtaactgtttagtcatggcctccacccatgacattcaggagttggatgtgtca
tccatcttggccacacagatcttgacatggattgatgatgatgatgctgaagccaaaggt
tttggtggtgatgacttcctggtggtccacacacgcgatgactttgctgccatccacgga
accacaccgtacactcacagtagccctggcacacccatcaacatgccgtggctgggggga
ctgcagacgggccggggtgcatctgtgatgatcaagagaaatatcaacaatgtgagaaga
atgacctcccatcccacgctgccttactacctgacaggagctcaggatggtagcgtgagg
atgttcgagtggggtcactcccagcagatcatctgcttcagaagtccaggcaactccaga
gtcaccaggatacgattcaaccaccagggaaacaagtttggtatcgtagatgccgatgga
ggtttgagtctctggcagaccaacacaagcgggaatgcacccaaaccatacctgacgttg
caatgccacaacaagacagctcacgacttcgtctttgtgggctcctcctccctcattgcc
actgcgggtctttcaacagacaacaggaacgtgtgtatgtgggacactctggtgactcct
gcgaacagccttgtgcacgctttctgttgccacgagtccggtgctaccgtgctctcgatg
gctcccaggcagcagctactcatcacaggtgggaggaagggctggatcagcgtcctggag
ctcccccacaggcaccaacgccagagcttccaggcccacgactcgccggtcaaagcactg
gctgtggatccgactgaggactgctttatcagtggatcatcggagggcaacattaaggtt
tggagcctgaccacacagtgtccactctacacctttccaaacgaacacgctcgccagtcg
ctgttcaggaacctcggcacgggcgtcatgcagatagaggtggggccgaccaaccacatc
ttctcctgcggcgcagatggaaccatgaagatgaggatcctacccaaccgcttcagtgtt
gtcaacaacaacaacaacaaccacggcaacctcaagaacgatgtcaagttcttcatatag
DBGET
integrated database retrieval system
