Siniperca chuatsi (mandarin fish): 122877013
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Entry
122877013 CDS
T08948
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122877013 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122877013 (col27a1b)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122877013 (col27a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
122877013
NCBI-ProteinID:
XP_044054013
LinkDB
All DBs
Position
LG5:28136645..28203560
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AA seq
1704 aa
AA seq
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MEPDNAPYSKLKTTGVGGRVLILWTILCCTCSLRLAQAQDVDVLHQLGLSGRRAGGSSSS
GARSFPNGVIPFKSGVILTPRARIQVPLRTVIPTTYTSINLSLILSLSVHRINSAFLFSV
LSKKRKVQLGVQFVPGKVLVHVGPRSSVSFDYDVHDGQWHSLALDIQGHQVFLHTSCGKR
SIHADLHSKKEEALDAEGSFLLGKMNHNSVPFEGAICQFDIYPSAKAAHNYCDYIKKHCR
EADTYRPVFPPLLPLFSTDSNITVTHITPPSLTEIFKKAQRPTLALTEESTRTTILVPTD
RSLMLNKTSVYHTLSTPNPGAVSVSPPVHPGLESPFKFPTQTATTSLRISVTQPNPKPTS
NGSAGKNTKQEDTNSQKPCGESMDLPASTRPSEMKPNLQTTAAFTQGSPSNAYLPHKKQL
TTVASKKPEPKVTSVQDVKPTSFIPVTPAATDGFQTFDLEPTQFSLLAGPPGLKGEPGPP
GLQGLPGLPGKPGKRGPRGPPGPHGNPGRPGPPGVKGQKGDHGLSPGQASKGQKGEPGIM
GPPGLPGQDGRKGQKGHPGPSGLPGEPGERGDDGSPGAKGYPGRQGLPGPVGKMGPKGVR
GHIGIPGLFGLPGPDGERGIPGIHGKKGKMGRPGFPGDFGERGPPGPDGNPGELGAPGPC
GVPGLIGDMGPVGIMGLPGPPGLKGIPGNPGEPGLKGDKGDVGISGEPGECGFQGDKGIR
GSSGLPGPRGKPGPQGKPGEKGPDGLPGPPGPEGFPGDIGPPGQNGPEGPKGKQGTRGLP
GPRGTPGLQGDEGPVGPAGPAGLEGRPGRQGFPGLTGPDGLKGETGITGEVGKLGERGLP
GFVGPVGETGIAGEKGDRGKTGAPGPPGEPGPMGHTGIPGETGPPGPEGIPGPPGSRGSI
GIRGPKGRRGLRGPDGPVGEKGSTGVKGHDGPPGKLGLPGEMGKFGEPGETGPKGFPGVQ
GPSGPPGAKGIAGEPGPAGPPGTIGPLGEMGQRGPPGNPGERGLPGERGEKGAFGLPGNI
GEQGLIGQRGEPGIEGDAGTSGPDGAKGEKGDAGPEGTTGERGEIGLKGKEGPPGPPGLV
GVRGQEGKPGKIGERGKPGEKGSKGYQGHLGETGPVSEQGEMGFVGQKGVRGTIGPVGAP
GRMGQQGDPGISGYEGHMGPQGPLGPPGPKGEKGEQGDDSKAEGPPGPQGDRGAPGDRGE
RGEPGDPGHIGQIGVDGKRGEAGAPGLPGHSGPKGQPGLKGSKGDQGQKGKSGARGASGT
KGPPGLEGPPGPRGVVGREGLEGPPGMDGLPGKDGSKGVKGEQGEDGEVGLPGKPGQQGK
TGVTGLPGSQGSFGPKGERGLPGQTGASGKRGSIGGMGLPGKQGDPGPKGQPGDSGEQGF
PGVLGLFGPKGPPGDFGSAGIQGPKGPRGLMGMEGALGPIGIIGPSGHPGPQGDKGSRGE
TGLQGPRGSPGPRGPPGPPGLPSSALSLRNEALGAAFPVIDSHAALRSEQNYQSMDLPML
DQSTDIFKTLQHLSTLIQSLKNPLGTRDNPARICRDLYNCEQRMYDGTYWIDPNLGCAAD
TIEVTCNFTGGGQTCLKPITVSKLEIGVGRIQMNFVHLLSSEAVQHITIHCLNTPVWAAG
PSLQPSRRAVSFKAWTGEKIQAGDLLEPLIPRDDCWIKDGRWRQAHFIFQTQDPNLLPIV
DLYNLPTTEPGARYHLEVGPVCFL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgtactccaaactcaaaaccactggagtcggggggagagtt
ctgattctttggactatactctgttgcacctgctctctaaggctagcacaagcacaagat
gtggatgttctgcaccagcttgggctttctgggcgaagggcaggcgggtcgtcatcttca
ggtgctcgatccttccctaatggcgtcatccccttcaagtctggagttatcctcaccccg
agggcacgtatccaggtgcctctgcgcactgttatccctactacctacacctccatcaat
ctctccttgatcctcagcctgtctgttcatcgcatcaacagcgcttttcttttctcggtt
ctatctaagaaaaggaaagtgcagctcggagtgcagttcgtacccgggaaggtcctggta
cacgtggggccgaggagctctgtgagtttcgactatgatgtccacgatggccagtggcat
agtctggccttggatatccaaggccaccaggtgttcttacacacttcttgtggaaagaga
agcatacatgcggatttgcattctaaaaaagaggaggctctggatgcagagggctctttc
ctgctgggcaaaatgaaccacaactcggtgccgtttgaaggtgccatctgtcagtttgac
atttatccctctgctaaggcagctcataactattgtgattacattaagaaacattgcaga
gaagccgacacgtatcggcccgtgtttccacccctgctacctctattttccacagactca
aacattactgtcactcatataactccaccgtcactgacggagatattcaaaaaggcccag
agacctactctggccttgaccgaggaaagcaccaggactacgattcttgttccaactgac
cgctcgctgatgctgaacaaaacatctgtgtatcacactctgagcactccaaatcctggt
gctgtgtctgtttctccaccggttcatccagggttggaaagcccgtttaaatttccgact
caaactgctactacatctcttaggatcagcgtgacacaaccaaaccccaaaccaacttca
aatggcagtgctggaaagaacacaaagcaagaagatactaattctcagaaaccttgtggc
gaaagtatggatttacctgcttccaccagaccatctgagatgaagccgaacctccagacc
acagctgctttcacacaggggtccccttcaaacgcctaccttccccataaaaagcagttg
accacagtagcttcaaagaaacctgagccaaaagtgaccagtgtgcaggatgtcaaaccc
acctcgtttattccagtcactccagctgcaacagatggcttccaaacatttgacctggaa
ccgacgcagttctcgctgctggctgggccacctggactaaagggagaaccaggaccgccg
ggccttcaaggacttccagggttgccaggaaagccagggaagaggggcccacggggtcct
cccggcccacatggaaaccctggtcgccctgggcctcctggagtcaagggacaaaaagga
gatcatggactgtcccctggtcaagcctcaaaaggacaaaaaggagagcctggtatcatg
ggcccccctggactgcctggacaagatggacgaaagggacaaaaaggtcatcctggtcct
tctggtctcccaggtgaacctggtgaacggggagatgatggaagccctggggccaaaggc
tatcctggcaggcagggtttacccgggcctgtagggaaaatggggccaaaaggagtcagg
ggtcacattggcatccctgggctttttggccttcctggtcctgatggcgagagaggaatt
cctggcattcatgggaagaagggcaagatgggtaggccggggtttcctggtgactttgga
gagaggggacctcctggccctgatgggaacccaggtgaactgggagctcctggcccatgt
ggagtccctggtcttattggagacatgggccctgttggcattatgggcttaccaggacca
ccagggctcaagggaatacctggaaacccaggagagccaggactgaaaggtgataagggg
gatgttggcatatcaggagagccaggggagtgtggattccaaggggacaagggtatccgt
ggctcatctgggttgccgggtcctcgtggaaaacctggaccacagggcaaacctggtgaa
aagggccctgatggtttacctggccctcctggcccagagggctttccaggtgacattggc
ccaccaggacaaaatggccctgaaggacccaagggaaagcaagggacaagaggattgcca
ggtccaagaggaacacctggacttcagggtgatgagggaccagttgggccagctggacct
gctggactcgagggcaggcctgggaggcagggattccctggactgacaggcccagatgga
ctcaagggcgagaccgggataactggcgaggtcggaaagcttggcgagaggggactgcct
ggttttgtcgggcctgtcggagagacgggcatcgccggagaaaagggggatcgagggaaa
acaggagcccccgggccgccgggtgaaccggggccgatgggtcacactggaataccagga
gagacggggccacctggaccggaagggatcccagggcctcctggttcacggggatccatc
ggcatcagaggacccaaaggcaggaggggtctgaggggtcctgatggcccagtgggggag
aaagggtccactggagtgaagggccatgatggtccaccaggaaaattgggcctccccggg
gagatgggaaagtttggcgaacctggtgaaactgggcctaagggatttccaggtgttcaa
ggaccttcgggacctccaggagccaaaggaattgcaggagagccaggaccagcagggcca
ccaggaacgattgggccactgggggaaatgggacagagggggccgccggggaaccctgga
gagagaggactgcctggtgaacgcggagagaagggtgcctttggtctacctggcaacatc
ggggagcagggtttgattggccagagaggtgagccaggcattgaaggggatgctggaaca
agtggacctgatggagccaagggtgaaaagggggatgctggtccagagggcactacagga
gaaaggggtgaaatcggtctgaaaggaaaggaaggaccccctgggcctcctggactggtg
ggggtaaggggtcaggagggtaaacctggcaaaattggtgaaagaggaaaaccaggagaa
aaggggagcaagggttaccaaggtcacctgggtgagaccgggccagtcagtgagcaggga
gagatggggtttgtcggacagaagggagtgagaggaaccatcgggccagtgggtgctcca
gggagaatgggccaacaaggagatccaggcatatcgggttatgagggtcacatgggaccg
cagggccccctgggacctccagggccaaaaggtgaaaagggtgaacagggagacgacagc
aaggcagaaggtcctccaggtccccaaggtgacagaggtgctcctggagacagaggagag
agaggagagccaggtgaccccggacacattggtcaaataggtgttgatggaaagagaggt
gaagctggtgccccagggcttcctggacattcggggccaaagggacaaccagggctgaaa
ggatccaaaggtgatcaaggtcagaaaggaaaatcaggggcgagaggcgcatctgggacc
aaaggaccaccaggtttagagggtcctcctggcccacggggagttgtgggcagggaggga
cttgagggcccgcctggcatggatggactgcctggtaaagatggaagtaaaggagtcaag
ggggagcaaggagaagatggagaagtgggcttacctggcaaacctgggcagcagggtaaa
actggagtgacagggcttcccggaagtcaaggctcctttggaccaaagggtgagaggggt
cttccaggccaaactggtgcatcaggaaaaagaggctcaattggcgggatgggattgcca
ggaaaacaaggagaccccggacctaaagggcaaccaggggacagtggtgaacaaggattt
ccaggggtgttgggtctgtttggaccaaagggacccccaggagactttggctcagcaggg
atacagggaccgaaaggaccacgtggtttgatgggtatggagggagctttgggccccatt
ggcatcattggccccagcggtcatcctggaccccagggtgacaaaggaagtcggggggag
acggggttgcaaggaccaaggggctctcctggccctcgtggaccacctggaccaccaggt
cttcccagttctgccctctcacttagaaatgaggctcttggtgctgcctttccagtcatc
gattcccatgctgcactgaggtcagagcagaattatcagagcatggacctgcccatgtta
gaccagagtacagacatcttcaagaccttgcagcatctcagcactctgatccagagtctt
aagaacccgcttggaacccgtgacaaccctgcacgaatctgccgagacctctacaactgt
gaacagaggatgtacgatggaacttactggatcgacccaaacctcggctgcgctgctgac
actattgaggtgacgtgcaacttcactggtggaggacagacttgcctgaaaccgatcaca
gtatccaagttggagataggagtgggtcgtatccagatgaacttcgtccaccttttgagc
agtgaggcagtgcagcacatcaccatccactgccttaacacacctgtgtgggcagcagga
ccctccctgcaaccttcacggagggcggtgagcttcaaggcctggacaggggagaagatt
caggcaggcgacctcctggagccgctcataccaagagacgactgctggattaaagatggc
cgttggcgtcaggcccacttcatcttccagacccaggacccaaacttactccccatagtg
gatctgtacaacctaccgaccacagaacctggcgcacgctatcacctcgaggttggaccc
gtgtgcttcttatag
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integrated database retrieval system
