Siniperca chuatsi (mandarin fish): 122877103
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Entry
122877103 CDS
T08948
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122877103
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
schu03310
]
122877103
Transcription factors [BR:
schu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122877103
Nuclear receptors [BR:
schu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122877103
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
122877103
NCBI-ProteinID:
XP_044054144
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Position
LG1:1657168..1761340
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AA seq
543 aa
AA seq
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MESSPQDPASDPGRSCSEPATPVTETPASLETLGGGEPLTPARRPSSSGSSSSGYSKGLS
AAVKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQQQQQGPLL
LSHPSLGSPSSGEAEPLSPHYGLSSAGLTELPDELGGSPEGGSVSSKADSGGGGEGGGGF
YLDFQPSPDQSGLDMNGIKPEPLCDYGSSNGFFPYCSFSDGNASPTASMAELDHLAQIIS
KSHLETCQYLREELQQMTWQNFLQDEVESYQSKPREVMWQLCAVKVTEAIQYVVEFAKRI
DGFMDLCQNDQIVLLKAGSLEVVFVRMCRVFDSQNNTVYFDGKFAGPDAFRALGCDDLIT
SVFDFAKSMCSLHLSEDELALFSAFVLLSADRSWLQEKLQVEKLQQKTQLALQHVLQKNQ
REDGLLNKLRCKVSALRSLCSRHTEKLSAFRAVYPDIVGTHFPPLYKELFGADLELTLQT
DDD
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtccccgcaggatccggcgagcgacccgggcaggagctgctctgagcccgct
acgccggtcacggagacaccggcgagcctggagaccctggggggcggagagccactgact
ccggcgaggagaccaagcagctccgggtccagctcctccggctacagcaaaggtttgtca
gcagctgtgaagaagacacacacatctcagattgaaatcattccctgtaagatctgtgga
gataaatcatcagggatccactacggggtgatcacctgtgagggctgtaagggtttcttc
aggcggagtcagcagagtaacgccgcctactcgtgtcctcgccagaaaaactgtctgatc
gaccgaacgagccgcaaccgctgccaacactgccgtctgcagaagtgtctggctgtgggc
atgtcccgagacgctgtaaagtttggtcgcatgtccaagaagcagagggacagcttgtac
gctgaggtgcagaaacaccgcctccagcagcagcagcagcagcagcagggtcccctcctc
ctgtcccaccccagtctcggcagcccaagctcgggcgaggctgagccgctgtcccctcac
tacggcctctcctccgcgggcctcacggagctgccggatgagctgggaggctcacctgaa
ggaggatcagtctcatccaaggcagactctggaggaggaggagaaggaggtggtgggttc
tacctggacttccagccatccccggaccagtctgggctcgatatgaacggcatcaaaccg
gagccgctgtgtgactatgggtccagtaacggcttcttcccgtactgctccttcagcgac
ggaaacgcatcgcccaccgcgtccatggctgaactcgatcacctggctcagatcatctca
aagtctcacctggagacgtgtcagtacctgagggaggagctgcagcagatgacctggcag
aactttctgcaggacgaggtggagagctaccagagcaagccgcgggaggtgatgtggcag
ctctgtgctgtaaaggtcacagaggccatacagtacgtggtggagttcgccaaacgcatc
gacggcttcatggatctctgtcaaaatgaccagatcgtgctgctgaaagctggctctctg
gaggtcgtcttcgtccgaatgtgtcgggtgtttgactcgcagaacaacaccgtctacttc
gatgggaaatttgcaggtcctgacgccttcagagcattaggttgtgatgacttgatcaca
tcagtgttcgactttgctaaaagcatgtgttcgctgcatctgtcggaggacgagctcgct
ctgttctcagcgttcgttctgctttctgcagaccggtcgtggctgcaggagaagctgcag
gtggagaagctgcagcagaagactcagctggctctgcaacacgtcctgcagaagaaccag
agagaggacgggctgctaaacaagctcagatgtaaggtgtcagcgttgcgttcactgtgc
agtcgacacacagagaagctgtcagcgttcagagctgtttaccccgacatcgttgggaca
cacttccctcctctttataaggagctgtttggtgctgacctcgaactgactctgcagacc
gacgacgactaa
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