Siniperca chuatsi (mandarin fish): 122877182
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Entry
122877182 CDS
T08948
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
122877182 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
schu04040
]
122877182 (cngb1a)
Ion channels [BR:
schu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122877182 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Pyr_redox_3
Motif
Other DBs
NCBI-GeneID:
122877182
NCBI-ProteinID:
XP_044054265
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All DBs
Position
LG1:complement(1232181..1269093)
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AA seq
1418 aa
AA seq
DB search
MLSWVVKVVPQLPEPPPKKAEEQEAKPAAAPPPAAAPPPVAAPPPAPEKKVKFQDECKNE
TPKADKPKQEEQAAEGNGPAPGSQPGVLTWISGALPQPAVSPKLSRANSTTKEENAATSK
PEDEQGMIAWIAQGLEKVVPQPDLKSPPAEQPTEVRQTAAAPPAAKPQVTVTESEREDKT
DNKALPPRVMDWIKHGIEKVVPQPEVHVRSKAEVKEKTEAPASAKEEAPAPEPPPAPKPP
ADPEPPPAPKPPAADTEKSSKEAEQQPNMMGWIVSEIGRMLPQPVQKQDAGSDEVQNIRI
GPKETDLTLEDMEEDENTEDAKQEEKETEDAETQMDQVKDGIEEEAEEAVLAHMEERLQQ
ERLGAARIAEEMARKAAEEAVRQLEVEHSAKIVIETLPESNEQLPNILEEENEDEPELQT
LQEDSEDSTDNTSPAENKVTEENNQTTVEEARPHQCPTDVFPAEDDATLSSTDAEPASER
RDLDSPVPQPITQQPEPRAPEAQASTEQATAGGGGGGGGGVPDICSPIKSFLLRFPHAAE
CLESCGKLMRDRYLTPPKLSVPTPPPRLAQLTQELSQLATQARQCCMSIASRFRRLNSNS
QHPQQPAKQTPVYRKHPTSSSSSSSLPSCSTALHCFTTSCQPTTPQGEAWVERPVLRVED
VDQDVGQRKGLNIPQIITTPEPEFSTQSVPLSKLSPADDLSADEDDEELLRVGLKSGQGD
LLTADDEMRPLSAASVGSVVIQDRLNDLVRLFKGRTERQRDRLVDPDESEEESPSASPSK
PPPPPPPPPPPPPGEEKKDEAPAAAEEEEEEEKEFELPFKLLGQPVKIPKLPKLPKLPQL
PDWLRAIVEYRFPSSIDPFTDLIYVIWLFIVVAAWNWNVWLIPVRWAFPYQTPENIHLWL
LMDYTCDLIYITDILVFQPRLQFVRGGDIVCDKKDMRENYMTTERFKMDIISLFPMEIFY
YFTGVNSLLRFPRLLKYMAFFEFNDRIEAVMKKAYIYRVIRTSTYLLYSLHINACLFYWG
SDYEGLGSTKWVYNGKGNAYIRCYYFAVKTLITIGGLPDPTTVFEICFQLINYFVGVFAF
SIMIGQMRDVVGAATAGENYYRACMDSTVKYMNSYNIPREVQNRIKTWYDYTWKIQGMLD
EQELLVQLPTKMRLDIAVDVNYAIVSKVALFQGCDRQMVFDMLTRLKSVVYLPGDFVCKK
GEIGREMYIIKQGEVQVVGGPDLQTVFVTIRAGSVFGEISLLAGGGGNRRTANVKAHGFA
NLFILDKKDLAEILVHYPESQKLLRKKAKTMLTKDKKPDVKDGGKEAMEVIPPRPDTPEM
FKAALKVTEKAGIEGTFSKLAKTYKASESAAEAPPVSPDPPRSRMHQRSPGPLAPVQDDE
GAVSETADSSVIIRMTPRQEGGELLTVEVTHGKGEEDG
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctgggtggtcaaagtcgttccccagctgcctgagcctccgcccaaaaaagct
gaagagcaggaggccaagccagccgcggccccgccccctgctgctgccccgcctcctgtc
gcggccccgccccctgctccagagaagaaagtgaaatttcaagatgagtgcaaaaatgaa
actccaaaagctgacaaacccaagcaggaagaacaggcagcggagggcaacggcccagcg
cccggctcccagcccggcgtgttgacgtggatcagcggcgctctgcctcaacctgcagtc
tcgccaaagctgagccgagccaactccaccaccaaggaggaaaatgcagcaaccagcaaa
cctgaagacgaacaggggatgatagcttggatcgctcagggtttggagaaagtcgttcct
cagcctgatctgaagtcaccgccagctgagcagcccactgaggtgcgtcaaacagcagct
gcaccaccagctgcgaagcctcaggtgaccgtgacggagtcggagcgagaagataaaacc
gacaacaaagcactcccgcccagggtgatggactggataaagcacggtatagagaaggtg
gttcctcagccggaggttcacgttcgctcaaaggcagaagtcaaggagaagactgaagct
cccgcttcggctaaagaagaggctccagcaccagaacctcctccagccccgaaacctcct
gcagacccagaacctcctccagccccaaaaccccctgctgctgacactgagaagtcttcc
aaggaagcagagcagcagcccaacatgatgggctggatcgtcagcgagatcggtcgcatg
ttgcctcagcctgtacagaagcaggacgcaggcagtgacgaggtgcagaacatccgcatc
ggaccgaaggagacagacctgacactggaggacatggaagaggacgagaacacggaggac
gccaagcaggaggagaaggagacagaagacgcagagacccagatggatcaagtgaaagac
ggcatcgaggaggaggccgaagaggccgtcttagcacacatggaggaaagactgcagcag
gagcgtctgggggcggcccgcatcgcagaggagatggccaggaaggcagccgaagaggcg
gtccgacagctggaggtggagcattcggcgaagatcgtcatagaaacgctgcccgagtcc
aacgagcaactgcccaacatcctggaggaggaaaacgaggacgagccagagctgcagacc
ctgcaggaggacagtgaagacagcacagacaatacgagtcctgcggaaaataaagtaaca
gaagaaaataaccaaaccactgttgaggaagcgagaccgcatcagtgcccgacggacgtc
ttcccggctgaagacgatgccactctttcatcaacagacgcggagccagcatcggagagg
agagacctggacagtccagtcccccaaccgatcacccaacaaccggagccacgagctcca
gaagcccaggccagcacagagcaggccactgcaggaggaggaggaggaggaggaggagga
gttcccgacatttgctctccgataaaaagcttcctgcttcggttcccgcacgctgctgag
tgtctggagagctgcgggaagctgatgcgtgaccgttacctcacccctcccaaactgtcc
gtgccgaccccgccgccgaggctcgcccagctgacccaggagctgtcgcagctcgccacg
caggcgcgacagtgctgcatgagcatcgccagccgcttcagacgccttaactccaactcc
cagcatcctcagcagcctgccaaacaaacccctgtgtatcgaaaacatcccacctcctcc
tcctcctcatcatcactcccatcatgctctactgctctgcactgcttcaccacgagctgc
cagccaaccacacctcagggagaggcctgggtggagcgtcccgtgctgagggtggaggac
gtggatcaggatgtggggcagagaaaaggcctgaacatcccccaaattatcacaacccca
gaaccagagttcagcactcagagcgtcccgctgtcaaagctcagtccagcagatgatctg
tctgcagacgaggacgatgaagaactgctgagggttggtctgaagtccggtcagggagac
ctgctgactgcagatgatgagatgcgtcctctgtcagcagccagcgtcggcagcgtggtg
atccaggaccgtctgaacgacctcgtcaggctgtttaaaggtcggacagagcgccaaaga
gaccggctggtggacccggacgagtctgaggaagaaagtccctcggcctccccgagcaaa
cctccacctcctcctcctcctcctcctccacctccaccaggagaagagaagaaggacgaa
gcgcctgcagcagcagaagaagaggaagaagaggagaaggagtttgagctcccctttaaa
cttttggggcaaccggtgaaaattcccaaactgcccaaactgcccaaacttccccagctg
ccggactggctccgagccatcgtggagtaccgcttcccctccagcatcgaccccttcacc
gatctgatctacgtgatctggctgttcattgttgtggcggcgtggaactggaacgtgtgg
ttgatccccgtccgctgggcgttcccctaccaaacccccgaaaacatccacctgtggctg
ctgatggactacacctgcgatctcatctacatcaccgacatcctcgtcttccagcccaga
ctgcagtttgtccgcggaggagacatcgtgtgtgataaaaaggacatgagagaaaactac
atgaccactgagcgatttaagatggacatcatcagtctgtttcccatggagatattttac
tatttcactggagtgaactctctgctgagattccctcgcctgttgaagtacatggctttc
tttgagttcaacgacagaatagaagctgtgatgaagaaagcctacatctacagggtgatc
cgaacctccacctacctgctgtactctctgcacatcaacgcctgtctcttctactggggc
tcagactatgaaggactgggatccactaagtgggtctacaatggaaaaggcaacgcttac
atccgctgttactattttgccgtgaagacgttgatcaccatcggaggactgccagacccc
accaccgtctttgagatctgcttccagctcatcaactacttcgttggcgtctttgctttc
tctatcatgatcggtcagatgagagatgtggttggagctgcgacagccggtgagaactac
taccgggcctgcatggacagcacagtcaagtacatgaactcctacaacatcccccgagag
gtccagaaccgcatcaagacctggtacgactacacctggaagatccagggcatgctggat
gaacaggagctgctggtgcaacttccgactaagatgaggctggacatcgctgtggacgtc
aactacgccatcgtcagtaaagtcgccctgtttcagggctgtgacagacagatggtgttc
gacatgctgacgaggctcaaatctgttgtctacctgcccggagactttgtctgtaaaaag
ggggagatcggcagggagatgtacatcattaaacagggcgaggttcaggtggtgggcggt
cctgacctgcagacagtgtttgtcaccatcagagccggctcagtgtttggagagatcagt
ttgctggcaggaggcggagggaaccgacgtacagccaacgtgaaggcgcacgggttcgcc
aacctcttcatcctggataagaaggacctggcagagatcttggtgcactacccggagtcc
cagaaactcctccgcaagaaggccaagacgatgttgacgaaggataagaagccagacgtg
aaggacggaggtaaagaggcgatggaggtcatcccacccagaccggacacccccgaaatg
ttcaaggcggctctgaaggtgacggagaaggcgggaatagagggaaccttctccaaactg
gcgaaaacctacaaagcatcggagagcgcagcagaggctccccccgtctccccggacccc
cctcgctctcggatgcaccagcgctctccgggccctctcgctccggttcaggacgacgag
ggcgcggtgtcggagaccgccgacagctcggtgatcatcaggatgacgccccgacaggaa
gggggcgagctgctcactgtggaggtgacgcatgggaagggagaggaggacggatag
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