Siniperca chuatsi (mandarin fish): 122877370
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Entry
122877370 CDS
T08948
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03320
PPAR signaling pathway
schu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
122877370 (rxrgb)
03320 PPAR signaling pathway
122877370 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122877370 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
schu03310
]
122877370 (rxrgb)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
122877370 (rxrgb)
Nuclear receptors [BR:
schu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
122877370 (rxrgb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
122877370
NCBI-ProteinID:
XP_044054770
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Position
LG6:complement(18832026..18869278)
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AA seq
468 aa
AA seq
DB search
MWHPVASPATGGSPGRESYGHYSIGPMSTVHTQPPHMGGMVGHPSVISTSRPLPSPMSTL
GSPMNGLASPYPVITSSLGSPSVSLPSTPNMNFGPLGSPQMNSMNSVSSSEDIKPPPGLQ
NLGNINYQCTSPGGMSKHICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSK
ECLIDKRQRNRCQYCRYQKCLAMGMKREGVCTAVQEERQRGKERGESEVEPTSSFNEEMP
VDKILDAELAVEPKTETYSDGSPSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPL
DDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELV
SKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGR
FAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaccccgtggcatcacctgcaactggaggcagccctgggagggagagttatggc
cactactctatagggccaatgagcacggtccacacccaaccccctcacatgggtggcatg
gtgggccatccgtcagtcatcagcacctccaggcccttaccgtcccccatgtccaccttg
ggctcgccaatgaacggcctggcctcgccctaccccgtcattacatcttctctgggctcg
ccctctgtatcactgccgtccacgcccaacatgaactttggaccactcggcagtccacag
atgaattctatgaacagtgtaagcagctcagaggacatcaagcctccgccgggcctacag
aacctgggaaacatcaactaccagtgtacgagccctgggggaatgtcaaagcacatctgc
tccatttgcggggaccgctcctcaggaaagcactacggcgtgtacagctgcgagggctgc
aaaggcttcttcaagaggaccgttcgtaaagaccttacctacacatgtcgagacagcaag
gagtgcctgattgataagcgccagcgaaaccgctgccaatactgtcgctaccagaagtgc
ctggccatgggcatgaagagagaaggtgtgtgtacagcggtgcaggaagagaggcagcgt
gggaaggagcggggagagagcgaggtggaacctaccagcagtttcaatgaggaaatgcct
gtggacaagatcctggatgctgagttggctgtggagcccaaaacagagacgtacagtgat
ggcagccccagcaactcaaccaacgaccctgtcaccaatatctgccaagcagcagacaag
cagctcttcaccttggtggagtgggccaaaaggatcccacacttctccgaactccccctc
gatgaccaggtcatcctactacgagcaggttggaacgagctccttatcgcctcattctcg
catcgctcagtcacggtaaaagatggcatcctgttggcaacaggtctccatgttcacaga
agcagcgcccacagtgctggagtgggctccatctttgatagagtcctgacagagttggta
tccaaaatgaaagatatgcagatggataagacagagctcggctgcctgcgagccatcgtc
ctcttcaaccccgatgcaaaaggtctttcaaacccaccagaggttgaagggctgagggaa
aaagtttacgcctcgctggagtcatacacaaaacagaaatacccagaccagccgggcagg
tttgccaagctgctgctccgcctgcccgccctgcgctccatcggcctcaagtgtctggag
cacctgttcttcttcaagctgatcggggacacgcctatcgacaccttcctgatggagatg
ctggaggctccgcatcagatcacatga
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