Siniperca chuatsi (mandarin fish): 122877431
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Entry
122877431 CDS
T08948
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122877431 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
schu04091
]
122877431 (frem1b)
Lectins [BR:
schu04091
]
C-Type lectins
Lecticans
122877431 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
122877431
NCBI-ProteinID:
XP_044054915
LinkDB
All DBs
Position
LG6:1528112..1585768
Genome browser
AA seq
1884 aa
AA seq
DB search
MQNQPPQAAFMASFILEVDQFILTPLTTATLDAEDHETPRERLVFGVTVPPTEGYITHLD
DHTKPITSFTWLDLHEMKVAYQPPNSSQSQRRNYEVEFQAIDGSYVTSPPIVVHISVRAA
ETNAPRVSWNMGLDLLEGQSRPITWEELQIVDSDNVDAVYLVAVDGPLHGRLSVRGGKAF
MFRVRDLREGVVVYHHSDSDTTRDHIVFRISDGRHSIRHKFPINILPKDDSPPFLINNVA
VEVQEGGAVRLEEYMLLASDLDSSDDYILYQMVSSPRAGQLVRKTSTHETGAPVDRFLQR
DLIQGQIYYQHSGEEQFEDSFDFTLSDSHQPPNLSQTYTVVVHVFPVKDQLPVEVSGSVR
SLTVKETEVVYVTQAHLHFTDREHPDTDLSYVITHPCFSPLHPGLMDAGRLFYTDSTNSM
KRDHMVPVLKSFTQHAVNHMKVAFMPPVEDIGPEPLFVQFVFSVSDHHGGTVSGLLFNIT
VTPVDDQAPEAFTNLLRVEEGGGAFVTEEHLLVQDRDSREEVLRVEVQRTARHGRLELQG
RTLLQGDGLTLQDLRGLRLRYIHDDSETTEDEVDLKVTDGLNSVDVVLPIQVLPMNDEPP
QLGGGLRGELSCEEGGQVQITVDYLSATDRDSDDSRLTYMLARSPGRGELQRAGLTVDKF
SQQDLLQGHIYYVHTGGEIGPQPVFDTVTLIISDGEAGGTDGCCHGDAPPPPVPLHGTLP
VYDLNITVHPVNNKVPTVTLGESVLVVDEGSSACLCGGVLGASDPDSPPDQLTFHLETPP
LHGFLENTLPTPGSEKSNAGVRVESFSLVHLTSGFINYVQSESKGAEPTVDQLSVSVSDG
LHRSAPVPFYIIISPTNDETPSLLLANFTVKEGGTRELTPSLLNAFDLDAPPDVLTFTVV
QPPAHGSLINGIYGTEMSRYREMGADLLQRSLSVTSFTLQELRQGMKIVYMHDDTETLKD
AVALRLTDGIHTVQGTARVTVLPVNDEKPRLLKSAGLVVDSGERRVISSVALEAEDLDTP
PDQVYYFLNAAPRFGKLQLKTESGWAELSAGQNFTQDDVEMNRLWYAHGAAANANAAGFK
GHDSFRFTLSDLDNETPAQSFFISVHTVQKGDLVLLSKAVHLTEGQRVVLNTDVLLASDS
AGRPEELVYAVSAPPRHGLVHAVQQPGVPLITFTQLDVAAHRVCYTHDNSRHAETDAFSF
VVTNGDSSRSGTLHFTIEHGDRIPPTLHRNAGLRLQDGSTETITADRLQITDPDTPAANL
SFVITQPPRHGKLLLRGVPLSPPLSFTQTDVEELNLAYRHDPGSPADIDRFYFLPTDGNN
RGYLEFGQLREEPAVFNIQVDRVDRLPPSLTTRRSPSTVVDLGGGRYGIFITSKHLQASD
RDSPTEELEFSISRPPHFGYLENALTGAYIKGRFTQRDVDQRAVVFVLPADMEVTADSFR
FRLTDPAGNAALPEILELSWSRVELSATCYRTCETAGTLQIQIRRSGKSADPAYVAIQVE
EGSAKPGRDFTHSTAGLIQFDPGVSVKTWNIYLIDDGLEENHETFTVTLKNPKNSVLGQR
TSASVEIIDPRGGRCDPDDLRVEEGEKRLPARLPDPPRPEEEDPVTDIEAELLWENQPNP
PRGDVPNRRPYLDYGEGEPQDQAAPSYSHIHYHSRQLPGAGTGSTGSTGPRVRHGGLKVH
LSGERRSEEQVWTFHSLTPLRLEELQPGDAGWSSSPHSRFLQELPVGDRPQMDHPEARHH
PELRQRKTGKSVSSSCPAGWTHYRRRCYILSSSVASWASAERTCSLLFNSSLTSVRSRRD
MTWLWKFARREPFWIGLSGGSGRWMWTDGRPVTFSRLRGPPPARSESDVGSDCVLVENPR
SWISTSCSPETQHTFICSSSAHTH
NT seq
5655 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaccagccgccccaggccgccttcatggcctccttcatcctggaggtggaccag
ttcatcctcaccccgctcaccactgccaccctggatgccgaggaccacgagacgccgcgg
gagaggctggtcttcggcgtgaccgtcccgcccaccgagggctacatcacccacctggat
gaccacactaagcccatcacgtccttcacctggctggacctccacgagatgaaggtggcc
taccagccgcccaacagcagccagtcacagcgcaggaactatgaggtggagttccaggct
atagacggctcctatgtgaccagcccgcccatcgtggtccacatctccgtcagggcagct
gaaacaaacgcacccagagtctcctggaacatgggtttggacctgttggagggccagtcc
cgaccaatcacgtgggaggagctgcagatagtcgacagcgacaacgtcgatgccgtctac
ctggtggctgtggatgggcctcttcacggacgcctcagtgtcagaggcgggaaggcgttc
atgtttcgcgtgcgggacctgagggagggcgtggtggtctaccatcactccgacagcgac
accacgcgtgaccacatcgtcttccgcatcagcgacggccgtcacagcatccgccacaag
ttccccatcaacatcctgcctaaagacgactccccgccgttcctcatcaacaacgtggcg
gtggaggtgcaggagggcggggccgtgaggctggaggagtacatgctcctagcctccgac
ctggactccagcgacgactacatcctctaccagatggtctccagcccccgggcggggcag
ctggtcaggaagacctccacccacgagacaggagcgccagtggaccgtttcctgcagaga
gatctgatccagggtcagatctactaccagcactcaggggaggaacagtttgaggactcc
ttcgacttcacgctgtctgacagccaccagccgcccaacctctcccagacatatacggtg
gtggtccacgttttcccggtgaaggaccagctgccggtggaagtttccggcagcgttcgc
tctctgacggtgaaggagacggaggtggtttacgtcactcaggctcacctgcacttcact
gacagagagcatccagacacagacctgagctacgtcatcacacatccctgcttcagccca
ctgcatcctgggctgatggatgcaggacgtctgttctacacagacagcactaacagcatg
aagagagaccacatggtgccggtgttaaagtccttcacacagcatgcagtgaaccacatg
aaagtggccttcatgcctcctgtggaggacatcggcccggagccgctgttcgtccagttc
gtcttctccgtcagcgaccaccacggcggcaccgtctccggcctcctcttcaacatcacc
gtcacccccgtggacgaccaggcgccagaggccttcaccaacctgctgcgggtggaggag
ggtggaggggcctttgtgactgaggagcacctcctggttcaggaccgggacagccgggag
gaggtgctgagggtggaggttcagaggacggcccgtcacggccggctggagctgcagggc
cgaacgctgctgcagggagacggactgaccctgcaggacctgagaggactccgactcagg
tacatccacgacgactctgagaccactgaggatgaagtcgatctgaaggtgacggacggt
ctgaactcagtagatgtcgtcctgccgatacaggtcctgccgatgaacgatgaacctccc
cagctgggtgggggtctgcggggggagctaagctgcgaggagggggggcaggtccagata
acggtggactacctgtcggccacagaccgggacagcgatgactccagactgacctacatg
ctggctcggagtccaggcagaggggagctgcagagagctggactgactgtggacaagttc
tcccagcaggacctgctgcagggacacatctactacgtccacacaggaggagagatcgga
ccccagccggtgtttgacaccgtcaccctcatcatctctgacggcgaggctggagggacg
gacggctgttgccacggagacgccccgcccccacccgtgcctctccacggcacacttccc
gtgtacgacctcaacatcaccgttcatcctgtcaacaacaaagtccccaccgtcactctg
ggtgagtccgtgttggtggtggacgagggctcctcggcctgtctgtgtgggggggtcctg
ggggcctcagaccctgacagcccccccgaccagctgacctttcacctggagactcctcct
ctgcacggcttcctggagaacacgctgccgacgcccggctccgagaagagcaacgcagga
gtccgagtcgaatccttcagtctcgtccacctgacctccggtttcatcaactacgtccaa
tcggagagcaaaggggcggagccaactgtcgaccagctgtccgttagtgtgagtgatggg
ctgcaccgctccgcccccgtccccttctacatcatcatcagcccaaccaatgacgagacg
ccttcgctgctgctcgccaacttcaccgtgaaggagggcgggacgagggagctgactccg
tccttactgaacgctttcgacctggacgcccctccggacgtcctgactttcacggtggtg
cagccgccggctcacggcagcctgatcaacggcatctacggcaccgagatgagccgctac
agggagatgggagctgacctcctgcagaggagcctctccgtcacctccttcaccctgcag
gagctccgtcagggcatgaagatcgtgtacatgcacgatgacacagaaaccctgaaggac
gccgtggctctgcggctgacagatggcatccacacagtccaggggacggctcgggtcacc
gtgctgccggtcaacgacgagaagccgcggctgctcaagagcgctgggttggtggtggac
tctggtgagcgcagggtgatctccagtgttgctctggaggccgaggacctggacaccccc
ccagaccaggtgtactacttcctcaacgctgccccacgcttcggcaaactgcagctcaag
acggagtcgggttgggccgagctgtccgccggtcagaacttcactcaggacgatgtggag
atgaaccgtctgtggtacgcacacggcgccgccgccaacgccaacgccgccgggttcaaa
ggtcacgacagcttccgcttcaccctcagcgacctggacaacgagactcccgcacagagc
ttcttcatctcagtccacaccgtgcagaaaggtgacttagtgctgctgagcaaggcggtg
cacctgacggaggggcagcgggtcgtcctgaacaccgacgtcctgctggcgtcggactcg
gccgggcgcccggaggagctggtctacgcggtgtcggccccgcctcgacacggcctcgtc
cacgccgtccagcagcccggagtcccgctgatcaccttcacgcagctggacgtcgccgcg
caccgagtgtgttacacccacgacaacagccgccacgcagagacggacgccttcagtttt
gtcgtcaccaacggcgactcgtcccgcagtggcaccctccacttcaccatcgagcacggc
gaccgcatcccgcctaccctccaccgcaacgcgggcctccggctgcaggacggctccacg
gagaccatcaccgccgaccggctgcagatcaccgaccccgacacccccgccgccaacctg
agcttcgtcatcacgcagccgccgcgccacggtaaactgctgctgagaggagtcccgctg
tcgcctccgctgagcttcacccagacggacgtggaggagctgaacctggcttaccgacac
gacccgggcagcccggcggacatcgacaggttctacttcctgccgaccgacgggaacaac
agaggatacctggagtttggacagctgagagaggagcctgcggtcttcaacatacaggtg
gatcgggtggacaggttgcctcccagtctgaccaccaggcgcagtcccagcaccgtggtg
gatctgggcggcgggcgttacggcatcttcatcacctccaaacacctgcaggcctccgac
cgcgacagccccacagaggagctggagttctccatctccagaccgccacacttcggctac
ctggagaacgccctcacaggagcttacatcaaaggtcgtttcacccagcgggacgtggac
cagcgtgccgtggtgttcgtcctcccggcagacatggaggtgacggccgacagcttccgg
ttccgcctcaccgacccggcgggaaacgccgcgctgcctgagatactggagctgtcctgg
tctcgggtggagttgtcggcaacctgctaccgaacctgtgagacggcggggacgcttcag
atccagatccgacgcagcgggaagagcgccgacccggcatacgtcgccatccaggtggag
gaaggatcggccaaacccggcagagacttcactcacagcacagccggtctcatccagttt
gacccaggagtcagtgtgaaaacctggaacatttacctgatagacgacggtctggaggaa
aaccacgagaccttcactgtcaccctgaaaaaccccaaaaactccgtcctgggacagagg
acctccgctagtgttgagatcatcgaccccagaggaggacggtgcgatccggatgacctg
agggtggaggagggcgagaagcgactcccagctcgcctccccgaccctcccagaccggag
gaggaggaccccgtcaccgacatcgaggcggagctgctgtgggagaaccagcctaacccc
ccccgaggcgacgtcccaaaccgacggccctacctggactacggggagggggaaccacag
gaccaggcggcccccagctacagccacatccactaccacagcaggcagctgccaggggcg
ggcactgggagcactgggagcactggacccagggtcagacacggaggactaaaggtccat
ctgtcaggagagaggaggtctgaggagcaggtctggacgttccacagtctgactcctctc
cggctggaggagctgcagccgggtgatgccgggtggagctcatcgcctcacagtcgcttc
ctgcaggagctcccagtcggagaccgtcctcagatggatcatccagaagccagacaccac
ccagagctacgccagcgcaagacagggaagtcagtcagcagctcctgtcctgccggctgg
actcactacaggagacgctgttacatcctcagctcgtctgtggccagctgggccagcgcc
gagcggacctgctcactgctgtttaacagcagcctcaccagcgtgcggtccaggagagac
atgacctggctgtggaagtttgcacggagagagccattttggatcggtctgtctggaggt
tcgggtcgctggatgtggactgacggtcggcccgtgactttctccagactgagggggccg
ccgccggcccgcagtgagtccgacgtcggctcagactgcgtgctggttgaaaaccccaga
agctggatttccacaagctgctcccccgaaactcaacacacattcatctgttcgtcgtcg
gctcacactcactga
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