Siniperca chuatsi (mandarin fish): 122877458
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Entry
122877458 CDS
T08948
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04010
MAPK signaling pathway
schu04020
Calcium signaling pathway
schu04144
Endocytosis
schu04510
Focal adhesion
schu04540
Gap junction
schu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122877458 (pdgfra)
04020 Calcium signaling pathway
122877458 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122877458 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
122877458 (pdgfra)
04540 Gap junction
122877458 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
122877458 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
schu01001
]
122877458 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
schu04090
]
122877458 (pdgfra)
Enzymes [BR:
schu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
122877458 (pdgfra)
Protein kinases [BR:
schu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
122877458 (pdgfra)
CD molecules [BR:
schu04090
]
Proteins
122877458 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
122877458
NCBI-ProteinID:
XP_044054969
LinkDB
All DBs
Position
LG6:complement(23570481..23588342)
Genome browser
AA seq
1468 aa
AA seq
DB search
MDDAKTCVVFGGILVVLVSVTSGLSQPPTIVSNEEEFILQPNSVFNISCTGKRNVVWSEP
LPKNTFVYPGYYTATLFIYNATVENTGYYMCTYETQEGGPEEDNEAGIYVFVPDPQAPFV
PEMPDNLIVPMDTTGVPISCRVSDPYFHVILRSVSSGEEMSAYYDNKMGFFGNLLPGQYQ
CETIVNSQTFRSVIYTVETEAPVAMEDFDVEVKASEETVRAGQPFTVTCIAPTGLGFQQQ
WLHPKKQAVNAVQMKQTFPDRVIYTLSIPQATSQDSGTYECSITHEISGEVRVSSAAVTV
FEENSFVALDHSGIIATEFAHLLEETEFTILIDAYPAPKVMWLKDGKAIPENYYVLTKTS
HLEGNRYQSILTLRQPLVKDNGNYTITALSGSRTAQFSFTLKVKAPTAVMFPPSSAPVLL
PQVEEMVVPLHTPFTLTCRGEAKLAWDTPLYVPEKTQEDNSGLFVTTITVDNSSAMHTGY
YTCFYSRNNTEDTEDSSIYIYVPDPDVPFVPSPVPFGNHVLSDHEEMEIQCRVSDPSANV
TLVNVDTQHPVPSFYDSKRGALGVFTAGTYVCKALINGEEHYSEEYIVHGWTGGAALHVE
LTARRTALLVGDTITVTCLARGSEILEDHWKYPGKLANRAIKTVHENKRDQEILYTLTIP
QASTKDSGIYSCSITDIISNESQTKQLAVRVYASEFMSIQPEFGEYESAELDEVREFKAE
ISSFPSAHVTWLKDGVPLSDVTAEISTSLRQLNETSYMSILTLIRAKEEDSGNYTMRVEN
GDQSRYVGLILEVKVPAVIVDLMDIHHGSATGQSVVCITRGQPTPVVEWFICKNIKHCAN
DSSSWVSLPANSTEITMDSHFDEDNNLESQVLFGHLENTLAVRCLARNEMAAVSREVKLV
SSGPHPELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEYIYVDP
MQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSE
KQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRENFLSLN
PEKTKKELDIFGINPADESSRSYVILSFESKGDYMDMKQADNTQYVPMLEMSNASKYSDI
QGSNYDHPPSQKGSSEGEMDDLLSDDMNEGLTTTDLLSFTYQVAKGMEFLASKNCVHRDL
AARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVW
SYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPPDVYEMMMKCWNSEPEK
RPSFLGLSDTVACLLPSSYKRHYERVNHDFLKSDHPAVTRVCMENDDAYIGITYKNQGKL
KDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHGSQTSEESAIETGSSSSTFAK
REGETLEDITLLEEMCLDCSDLVEDSFL
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgcaaagacgtgtgtagtctttgggggtatcttggtggtgctggtttcagtt
acctccggactgtcgcagccacctaccattgtgtccaatgaagaagagttcatcctgcag
cccaactccgtgttcaacataagctgtactggtaaaagaaacgtcgtttggtctgaaccc
ctgccgaaaaacaccttcgtttacccaggttactacacggcgacgctcttcatttacaac
gcaaccgtggaaaacaccgggtattacatgtgtacgtatgaaacccaggagggtggaccg
gaagaagacaatgaggcgggaatatatgtctttgtcccagatccccaggctccatttgtc
cctgagatgcctgataacttgatagtccccatggacacaactggagtccccatctcctgc
cgcgtgtctgacccctactttcacgtcatcctgaggagtgtctccagtggcgaggagatg
tctgcatactacgacaacaagatgggcttctttggaaacctcttgcctgggcagtaccag
tgtgaaaccattgtgaacagccagacattcagaagtgtcatttatactgtggagactgag
gcccctgtggcgatggaggactttgacgtggaagtaaaagccagtgaggagaccgtaaga
gcagggcagccttttaccgtcacatgcatcgctcccactggactgggctttcagcagcag
tggctccatcctaaaaaacaggctgtgaatgcagttcagatgaagcagacttttcctgac
cgggtcatctacaccctcagtatcccacaagccacctctcaggacagcggcacctacgag
tgctccatcacccacgaaatcagcggagaggtcagagtcagcagcgcggctgtcaccgtc
ttcgaggagaattcctttgtggcactagaccacagtgggattatagctacggagtttgcc
caccttttagaggagacagagtttaccatcctcattgatgcctacccggcccccaaagtg
atgtggctgaaagacggcaaagccataccagagaactactacgtcctcaccaaaactagt
caccttgaagggaatcggtatcaaagcattctgacattacggcagcctctggtgaaagac
aacgggaattacaccatcacagccctcagtggctcacgcacggcacagttctcctttacc
ctcaaagtgaaagcccccaccgcagtgatgttccccccatcctcagcccctgtgctgctg
ccacaggtagaggagatggtggtgcccctccacactcctttcaccttgacctgtcggggg
gaggcaaaactagcctgggatacaccgctctatgtgcccgagaaaacacaggaggacaac
agcggcctgtttgtcaccaccatcactgtggacaactcttctgcaatgcacactggctac
tacacatgcttctacagtagaaataacactgaggatacagaggacagcagcatctacatc
tatgtgccagatcccgatgttccttttgtgccatcaccggtgccttttggcaaccatgtc
ctgtctgaccacgaggagatggagatccagtgtcgagtgtctgatcccagtgccaacgtg
accctggttaacgttgacacccagcaccctgtgcctagtttttatgacagcaagaggggt
gctttgggagtattcactgctggaacctacgtctgtaaggccctcataaacggagaggaa
cactacagcgaggaatacattgtccatggctggacaggtggcgctgcactgcatgttgag
ctgacagccagacggactgctctgctggtgggagacaccatcacagtcacctgtctggct
cggggatctgagattctggaagaccactggaaataccctggcaaactggctaatcgtgct
atcaaaacagtgcatgaaaacaagagggatcaggagatcctttacaccctgacgatcccg
caggcctcaaccaaagacagcggcatctactcttgctccatcactgatattattagtaat
gagagccagacaaagcaacttgctgttcgagtttatgcgagtgagtttatgtccatccag
ccggagtttggagaatatgaatcggcagagctggatgaggtccgggagttcaaggccgaa
attagctcctttcccagtgctcatgtcacttggctcaaagacggcgtcccactcagtgat
gtgacagcggagatctccacaagcctccggcagctcaacgagaccagctacatgagtatt
cttaccctgatccgggccaaggaggaggacagcgggaactacaccatgcgagtagaaaat
ggagaccaaagtcgctatgtcggattgatcctggaggtcaaagttcctgcagtcattgtg
gacctgatggacatccaccatggctcagctacaggccagtctgtggtgtgcattacgaga
gggcagcccactcctgtggtggagtggttcatctgcaagaacatcaaacattgtgccaat
gactcgtcttcctgggtgtccctccccgctaactccacggagatcacaatggactcgcac
tttgacgaggacaataacctggagagccaggtcttgtttggccatctggaaaacacactg
gcggtgcgctgcctggccaggaacgaaatggccgccgtcagcagggaggtcaaactggtg
tccagtggccctcacccagagctgactgtagctgctgctgtgctggtgctcctggtcatt
gtcatcatctcactcattgtcttggttgttatctggaaacagaaaccacggtatgagatc
cgctggagggtcatagagtctgtgagcccagacggccacgagtacatctacgtggatccc
atgcagcttccgtatgactccagatgggagttcccccgtgacagacttgtgctcggtcgt
atcctgggctctggagcctttgggaaggtggtagagggcaccgcctatggacttagccgc
tcccaacctgtcatgaaggtggcagtgaaaatgctgaaacccacggcacgctccagtgag
aaacaggccctgatgtctgaactgaagatcatgactcatcttggaccacatctcaacatt
gttaacctcctgggagcgtgtaccaagtcaggccctatctacattatcacagagtactgc
ttctacggggacctggtcaactacctgcataagaatagggagaacttcctcagcctgaac
ccagagaaaactaaaaaagagctggatatctttggaatcaaccccgcagatgagagcagc
aggagttatgtgatcctgtctttcgagagcaaaggagactatatggatatgaagcaggct
gacaacactcagtatgtgcccatgctggagatgagcaatgcctctaaatactcagacatc
caggggtctaactatgaccacccaccctctcagaaaggatcaagtgagggcgagatggac
gacctgctgtcagacgacatgaacgagggcctcaccaccacggatctgctcagttttacc
taccaggtggccaaaggcatggagtttctggcttccaaaaattgtgtgcatcgggacctt
gctgccaggaatgtcctcctctctcagggcaagatagtgaagatctgtgactttggactg
gcccgagacatcatgcatgacaacaactatgtctccaaagggagcacttttctgccagtg
aagtggatggcgccagagagtatttttgacaacctgtacaccactcttagtgatgtttgg
tcttatggcatcctactctgggagatattctccttaggtggcaccccatacccagggatg
gtcgtggattcaagcttctacaacaagatcaagagtggatacaggatgtccaaaccagag
cacgcacctcccgacgtgtatgagatgatgatgaagtgctggaacagtgagccggagaag
aggccttctttcctgggtctgagtgatactgtagcttgtttgctgccctccagctacaag
aggcattatgagcgggtgaaccatgacttcctgaaaagtgaccaccccgctgtgactcgg
gtgtgcatggaaaatgatgatgcgtacattggcatcacctacaagaaccagggcaagctg
aaggacagggaaagcggctttgacgagcagcggctgagctctgacagcggctacatcatt
cccctccccgacctggaccctatatctgacgatgaatatggaaagaggaacagacacggc
tctcagacgtctgaggagagcgcaattgagacgggctccagcagctccacttttgctaaa
cgcgagggcgagactctggaggacatcacgctgctggaagagatgtgtctggactgtagt
gacctggttgaggacagcttcctgtga
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