Siniperca chuatsi (mandarin fish): 122877634
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Entry
122877634 CDS
T08948
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
schu01009
]
122877634 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122877634 (sh3rf1)
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122877634 (sh3rf1)
Protein phosphatases and associated proteins [BR:
schu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122877634 (sh3rf1)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122877634 (sh3rf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_11
zf-Nse
zf-rbx1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
122877634
NCBI-ProteinID:
XP_044055380
LinkDB
All DBs
Position
LG6:complement(24050988..24085659)
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AA seq
863 aa
AA seq
DB search
MDESVLLDLLECPVCLERLDASAKVLPCQHTFCRRCLQSILGSRGELRCPECRTLVECAV
DELPSNILLVRLLDGIKQRPRRAGPGAGVCTNGTSGAVARGHSSGTRDQGTPGAQPQRAQ
AKSTLVRGVPQLPCAKALYNYDGKEPGDLKFSKGDIIILRRQVDENWYHGEMGGVHGFFP
TNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDENWAEGMLGD
KIGIFPISYVEFNSAARQLIDLDKPSDSNGDSGEGASSGPQSNGAQRAGEKKNSKKRHSF
TSLTMSHKPMLAPPPQRHSMEISGPVLISSSNPTAAARIGEISGGLSCSAPSQVHICTTG
LIVTPPPSSPVTTATVFTFPSETSYTSIPVDVLPPPPPPPPQSSVDGAAYSLAAGQRPSP
SISDQSGRQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVF
PGNYMSPVSRTASGSTQPKVPMSLCTQAGRGVTIVSPSSAPIGAIVSGPDFNKLLTACSS
AVPANSQPAAVVTAAQTATGQQPKVPLHVSSQMTVNQARNAVRTAACHSQDRPTAAVTPI
QTATPVTYLPHLAVCTQSSTSAAQGCTRAGVAMGCAAASLTPPNVSAASLEGDALRPVPA
LTVPVGPVNSSALNPTSNSTALACRLDKDVKREKKSLLKLLSSNKKKSRPSPPSSPTLEA
EQAAAGEVLHGAVGPDTSPPSGSVSCLEPEPAAAVASASSSSSSSAPESSHRKSSPLDGC
APIAPPPRQPCSSLLSQQHDARPIICERYRVVVSYPPQSEAELELKEGDIVFVHRKREDG
WFKGTLQRNGRTGLFPGSFVDSI
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcagtattgttggatttgcttgagtgccctgtttgtctggagcgactggat
gcctcggcaaaggttcttccctgtcagcacaccttctgccgcagatgcctccaaagcatc
ctaggctcacggggagagttgcgctgcccagagtgccggacgttggtggagtgtgccgtg
gatgaactccccagcaacatccttcttgtgcgcctgttggatggcatcaagcagaggcct
cgaagggctggtcctggggcaggagtctgcacaaatggtacgtctggagccgtggccaga
ggacacagcagtggaaccagggaccagggcaccccaggagcacaaccccagcgagctcag
gctaaaagcacccttgtacggggtgtaccccagcttccttgtgccaaggcgctctacaac
tatgatggcaaggaaccaggagacctcaagttcagcaagggtgacattatcatcctgcgt
cgacaagtggacgagaactggtaccacggggagatgggtggagtccatggcttcttcccc
accaactttgtccaggttatcaaaccgctgccacaaccaccacctcagtgcaaagctctc
tacgactttgagctcaaagacaaggaggcagacaaggactgtctgcccttctccaaggat
gatatcctgactgtgatccgcagagtggatgaaaactgggcagagggaatgctgggagat
aaaattggaatttttcccatctcatacgttgagttcaattctgcagctcggcagcttata
gacttggacaagccgtcagactccaatggagactctggtgagggggcctcctcggggcct
cagagcaatggtgctcagcgggcaggagagaagaagaacagcaagaagcgacattccttc
acctctctcaccatgtcccacaaacccatgcttgctccccccccccagcgccactccatg
gagatcagcgggcccgtcctcatcagctccagcaaccccacagcagctgcccgaattgga
gagatcagtggggggctttcctgcagtgcaccttcacaggtacacatttgcacaactgga
ctaatcgtgaccccaccccctagtagtcctgttactacagcaacagtcttcacatttccc
tcggagacgagctacacatccatccctgtggatgttctcccaccgcccccacctcctcct
ccacagtcctccgttgatggagcagcatattcattggctgccggacagagaccctccccc
agcataagcgaccaaagtgggagacaaagacccacagtctatgtggctatgttcccctat
actccccgtaaggaggatgagctggaactaaggaagggagagatgtttctggtgctggaa
cgctgtcaggatggctggttcaagggcacctccatgcacactggcaagattggagtcttc
cctgggaactacatgagcccagtcagcaggacagcgtcagggagcacccagcccaaagtg
cccatgagtctgtgcactcaggctggcagaggggtcaccatcgtcagcccctcttctgct
cccattggggccattgtttcaggtcctgatttcaacaaactcctgaccgcgtgctctagc
gctgtacctgctaactcccaacctgcagctgtggtaaccgcagctcaaacagccacgggt
caacagccaaaagtccctctgcatgtcagctcccagatgactgtgaatcaggctcgcaat
gcagtcaggacagctgcatgtcacagtcaggaccggcccacagcagcagtgacacccatc
cagactgcaacacctgtgacctatctcccacaccttgcagtgtgcacgcagtcttccacc
agtgctgcccaaggctgtacccgggctggggtggcaatgggctgtgccgctgcctctctg
acaccacccaatgtcagcgctgcatccttggagggtgatgctttgagacctgtacctgcc
ctcactgtgcctgtcggccctgtgaacagctctgctctcaatcccacatctaacagcaca
gctctcgcttgccgactggacaaggatgtcaagagagaaaagaaaagtcttctgaagctg
ttgtcatccaataagaagaagtctcgcccttcaccaccctcctctcctacccttgaggcg
gaacaggctgctgctggagaggtgctacatggcgctgtgggccctgacacatcccctcca
tccggctctgtcagctgcctcgagcctgaacctgctgctgctgtcgcttctgcctcttca
tcctcctcctcctcagccccagagtcctcccatcggaagagcagtccccttgatggatgt
gcacctattgctcctcctcctcggcagccatgctcctctctcttatctcaacaacatgac
gcacggcccatcatatgtgagaggtacagggtggtggtatcatatcctccccagagcgag
gctgagctggaacttaaggagggcgacattgtgtttgttcacaggaagagggaagacggc
tggttcaaaggcacactgcagaggaacggcaggaccggactgttccctggcagctttgta
gacagcatctga
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