KEGG   Siniperca chuatsi (mandarin fish): 122877718
Entry
122877718         CDS       T08948                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu03030  DNA replication
schu03410  Base excision repair
schu03420  Nucleotide excision repair
schu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:schu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122877718 (rfc4)
   03410 Base excision repair
    122877718 (rfc4)
   03420 Nucleotide excision repair
    122877718 (rfc4)
   03430 Mismatch repair
    122877718 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:schu03032]
    122877718 (rfc4)
   03036 Chromosome and associated proteins [BR:schu03036]
    122877718 (rfc4)
   03400 DNA repair and recombination proteins [BR:schu03400]
    122877718 (rfc4)
DNA replication proteins [BR:schu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    122877718 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    122877718 (rfc4)
Chromosome and associated proteins [BR:schu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    122877718 (rfc4)
DNA repair and recombination proteins [BR:schu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     122877718 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    122877718 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_30 AAA_11 AAA_28 Gp44_lid DUF815 Mg_chelatase AAA_19 AAA_24 AAA_14 KH_DUF2096_C SLFN-g3_helicase RuvB_N AAA_5 DNAX_ATPase_lid Cdc6_lid ResIII AAA_7 AAA_3
Other DBs
NCBI-GeneID: 122877718
NCBI-ProteinID: XP_044055585
LinkDB
Position
LG6:29573007..29605079
AA seq 358 aa
MQAFLKGVTVQTTRPQKDKAAAGPSTEKKAKAIPWVEKYRPKCVDEVAFQDEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKN
FAQLIVAGTRQDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVRVSEGDLRKAITFL
QSAARLNINKEITERAVIEIAGVIPPKMIDNLLQICFKGTFEKLEVAVRSMVDEGYAATQ
ILSQLHESIIEQDLSDKQKSAITEKMAVVGKCLSDGADEYLQMLSLCSVIMQQASQNN
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcaggcctttttgaaaggagtaactgttcagactaccagacctcagaaagacaaggca
gcagcagggcccagtacagagaagaaagccaaggctattccttgggtagaaaaatacagg
ccgaagtgtgttgatgaggtggcctttcaggatgaggtggtagcagtgctgaagaaatct
ctggaaggagcagatcttcccaacttgcttttctatggccctcctggaacaggaaagacc
tccaccatcttagctgctgccagagaactttatggtccagagctgtacagacagagggtg
ctggagctcaacgcctctgatgaacgaggcatccaggtcgtcagagagaaggtcaagaac
tttgctcagctcatcgtagctgggactcgccaagatgggaagccgtgtcctccttttaag
atcatcatcctggatgaggcagattccatgacggcaccagctcaggctgctctcaggcgg
accatggagaaggaatcccgcaccacccgcttctgcctcatctgtaactacatcagcagg
attattgagcctctgacctctagatgttccaagtttcgcttcaaacctctagcaaatcag
atccaagaagagcgcctgctggagatctgtgagaaggagaatctcaagtacaccaaagag
agtatagcagcattggtgagggtgtctgagggagacctgcggaaagccatcaccttcctc
cagagtgcagcgcgcctcaacatcaacaaggagatcacagaacgcgctgtcattgaaata
gccggggtcatccctcccaagatgattgacaacttgctccagatctgcttcaaaggaaca
tttgagaaactagaggttgcagtcaggagcatggtggatgaaggctatgcagccacacag
attctgagtcagctccatgagtctatcatagagcaggacctgagtgacaagcagaagtca
gccatcacagagaagatggcagttgtgggcaagtgcctgtcagatggtgcagatgagtac
ctgcaaatgttgagtctgtgctcagtcatcatgcagcaggcctcccagaacaactaa

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