Siniperca chuatsi (mandarin fish): 122878028
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Entry
122878028 CDS
T08948
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122878028 (ptbp1b)
03041 Spliceosome [BR:
schu03041
]
122878028 (ptbp1b)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
122878028 (ptbp1b)
Spliceosome [BR:
schu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122878028 (ptbp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122878028
NCBI-ProteinID:
XP_044056258
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All DBs
Position
LG6:540686..567589
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AA seq
540 aa
AA seq
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MEPICSVHQDITVGTKRGSDELFSSVPNGPYIMSTTANGNDSKKFKGDIRGPGAPSRVIH
IRKLPIDITEAEVISLGLPFGDVTNLLMLKAKNQAFLEMNSEEAAQNMVGYYSTVMPIIR
QHPVYVQFSNHKELKTDNSPNQERAQAALRALSTSHVDAAVPAPSSVLRVVVENLVYPVS
LDALCQIFSKFGTVLRIIVFTKNSQFQALLQYPDGASAQAAKLSLDGQNIYNGCCTLRIS
FSKLTSLNVKYNNEKSRDFTRPDLPSGDSQPTMEHPAMATAFTPGIISASPYAGATHGFP
PAFALQPAMSFPYPGLTVPTLPGGLASLSLPGATRLGFPPLPAGVCVLLISNLNPERVTP
HCLFILFGVYGDVMRVKILFNKKENALIQMSDSTQAQLAMSHLSGQQLHGKSLRITLSKH
TSVQLPREGHEDQGLTKDYSNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLK
MLFSSSGAMVKAFKFFQKDHKMALIQMGSVEEAIESLIEFHNHDLGENHHLRVSFSKSSI
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggagccgatctgcagtgtccaccaagatataacagttggtactaagagaggatctgac
gagcttttctccagcgtccccaacggcccgtatatcatgagcaccacagccaatggcaac
gacagcaagaagttcaaaggtgacataagaggtcccggggcgccgtccagggtcatccac
atccgcaagcttcccatcgacatcacggaggccgaagtgatcagcctcggtctgcccttc
ggagacgtcaccaacctgctgatgctcaaagccaagaaccaggccttcttagagatgaac
tcggaggaagcagctcagaacatggtgggttattactccacggtgatgcccatcatccgg
cagcatccggtctacgtccagttctccaaccacaaggagctcaagactgacaactccccc
aaccaggagagggcccaagcggctcttcgggccctcagtacgtctcatgtggacgcggct
gtgccggctccgagctcggtgctgagggtggtggtggagaacctggtctaccccgtctcc
ctggacgccctctgccagatcttctcaaagttcggcacggtgctgaggatcatcgtcttc
accaagaacagccagttccaggctctgctgcagtatccggacggagcgtccgcccaggcg
gctaaactgtctctggacggacagaacatctacaacggctgctgcacgctgaggatcagc
ttctccaaactcaccagcctcaacgtcaaatacaacaacgagaagagccgcgacttcacc
agaccggacctgccctccggagacagccagcccaccatggagcacccggccatggctacg
gccttcactccaggtatcatctcagcttctccgtacgccggagcgactcacggcttcccg
ccagccttcgccctccagcctgcaatgtccttcccctatccaggcctgacggtccccact
ctgcccggaggcctggcctcgctgtccctccccggggccaccaggctgggattccccccc
ctccctgctggagtctgtgtcctgctgatcagcaacctgaaccctgagagagttacgccc
cactgcctctttattctcttcggcgtttatggcgacgtgatgagagtgaagattctgttc
aacaagaaggagaacgctctgattcagatgtccgacagcacgcaggctcagctagccatg
agccacctgagtggccagcagctgcatggcaagtctctgcgcatcacgctgtccaaacac
accagtgtccagctgccccgtgaaggccacgaggaccagggcctgaccaaagactacagc
aactcccccctgcaccgcttcaagaagcctggctccaaaaactactccaacatcttccca
ccttctgccaccttacacctctccaacatcccgccgtctgtggttgaggacgacctgaag
atgctgttttccagctcaggagccatggtcaaggccttcaagttcttccagaaggaccac
aagatggctctgatccagatgggctcagtggaggaggccatcgagtccctcatcgagttc
cacaaccacgacctgggagagaaccaccacctacgggtctccttctccaagtcctccatc
tga
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