Siniperca chuatsi (mandarin fish): 122878563
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Entry
122878563 CDS
T08948
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03030
DNA replication
schu03420
Nucleotide excision repair
schu03430
Mismatch repair
schu03440
Homologous recombination
schu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122878563 (rpa1)
03420 Nucleotide excision repair
122878563 (rpa1)
03430 Mismatch repair
122878563 (rpa1)
03440 Homologous recombination
122878563 (rpa1)
03460 Fanconi anemia pathway
122878563 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122878563 (rpa1)
03032 DNA replication proteins [BR:
schu03032
]
122878563 (rpa1)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122878563 (rpa1)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122878563 (rpa1)
DNA replication proteins [BR:
schu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122878563 (rpa1)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122878563 (rpa1)
MMR (mismatch excision repair)
122878563 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
122878563 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
RADX
Motif
Other DBs
NCBI-GeneID:
122878563
NCBI-ProteinID:
XP_044057383
LinkDB
All DBs
Position
LG7:complement(22104942..22133578)
Genome browser
AA seq
599 aa
AA seq
DB search
MTKLSEGAIEALSNGSGGNDAVLQLVNIRKIDGGSGPARFRVMMSDGRHTLSSFMLSTQL
NCMAEEKRLAPNCICILKRHVTNILKDGRRVVIILEIDVIKPAEDVTGKIGDPTPYTEGQ
IKGLQSAPNPENRPPLQPQNRNEVHRGFNKDFGKKAPSAMPSTPGGSSKVVPIASLNPYQ
SKWTIRVRVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFYSLIEVGKV
YYVSKGSLKIANKQFTSVKNDYEMTLNGESTIIPCEDSCDVPMVQCDFVSIGDLENRDKD
AIVDVIGVCKSVEEVTRLTTKSNKEVSKRTLNLMDMSGKVVTVTLWGEEAEKFEGSGQPI
VAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLRGWYDNEGHAMDGQSLTEMKGSGG
GNTNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNGM
FRCEKCDKEFPNFKYRLILSANISDYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNEAA
FDEVFQQANFNTFVFRSRVKLETYNDESRIKATVMDVKPVDHKDYSKRLIMNIRKLAAQ
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctctctgaaggtgcgatagaggctctatcaaatggctccggtggcaatgac
gccgtgcttcagttggtgaacattcgcaagattgatggaggaagcggtccagctcgcttt
cgggtgatgatgagtgatggacggcacactctgtcctccttcatgctctcaacccagctg
aactgcatggctgaggagaagagactggccccaaactgcatctgcattctgaaaaggcat
gtgaccaatatactgaaagatggccgacgggtggtaattattttggaaattgatgtcatc
aagcctgctgaagatgttactggaaaaataggtgaccctactccttacactgagggtcag
attaaaggcctccagtcagcaccaaaccctgaaaaccgccctccgctacagccacaaaac
agaaatgaagtgcacagaggtttcaacaaagactttggcaagaaggccccatctgctatg
cccagtacaccagggggcagctccaaagttgtgcccattgccagcctcaacccctaccag
tccaagtggaccatccgcgtccgtgtaaccaacaagagcagcatccgtacatggagcaac
tctcgtggtgatggcaaactcttctccatggagattgtggatgagagtggagagatacga
gtgactggtttcaaccaagaagtggacaagttctacagccttattgaagttggcaaggtc
tactatgtttctaagggctccttgaagattgccaacaagcagttcacatcagtgaagaat
gactatgagatgacactcaatggagagtccaccatcatcccctgtgaggacagctgtgat
gttcccatggtgcagtgtgactttgtctctatcggtgacctagagaacagagacaaagat
gccattgttgatgtgattggagtgtgtaagagtgtggaggaagtgacccgcctcacgacc
aagtccaacaaagaagtgtccaagaggacgctcaatctgatggacatgtctgggaaggtg
gtgactgtcacgctgtggggagaggaagcagaaaagtttgagggctctgggcagcccatt
gtagccattaagggggcgaagctttcagactttggagggcggtccctctctgcatccttc
agcagcaccctgatgatcaacccagacatccctgaggcatataaactcagaggctggtat
gacaatgagggtcacgccatggatggacagtctctgacagagatgaaaggtagcggggga
ggaaacactaactggaagactctatctgacgtcaagacggagcacctgggacatggagac
aaggcagactactacacctgcatagctaccatagtgtacctgcgcaaggaaaactgcctt
taccaggcctgccccagccaagactgcaacaaaaaagtggtagaccaacagaatggcatg
ttccgctgtgaaaagtgtgacaaagagttccccaacttcaagtaccgcctcatcctttct
gccaacatttcagattatggggacaaccagtgggtgacttgcttccaggagagtgcagag
gccatcttgggccagaacgcagcttacctggggcagctcaaggactcgaacgaagctgcc
ttcgatgaagtcttccaacaagccaacttcaacactttcgtcttccgcagtagagtgaag
ctagaaacgtataacgatgaatccaggatcaaggctacagtgatggatgtgaagcctgtt
gaccacaaggactacagtaagaggttgatcatgaacataaggaaactggctgctcagtag
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